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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5341 1qho_A)  (  335 1bag  )     0.7498   0.8568   3.7730 (   0    7   15)   0     0.8217   0.9054    8   7
( 5341 1qho_A)  (  367 1bf2  )     0.9992   0.7997   3.7742 (   0   15   28)   0     0.9992   0.7997    8  10
( 5341 1qho_A)  ( 1028 1e43_A)     0.7496   0.6664   4.5946 (   0    7   15)   0     0.8031   0.7348    8   9
( 5341 1qho_A)  ( 1729 1g5a_A)     0.8221   0.9061   3.0385 (   1   12   21)   0     0.8718   0.9938    8   7
( 5341 1qho_A)  ( 1839 1gjw_A)     0.6249   0.7142   3.7147 (   0    4   10)   0     0.6249   0.7142    8   7
( 5341 1qho_A)  ( 2063 1h3g_A)     0.8221   0.7467   3.0155 (   1   12   21)   0     0.9486   0.8590    8   9
( 5341 1qho_A)  ( 2232 1hl9_A)     0.8742   0.7774   4.4302 (   0   12   21)   0     0.8742   0.7774    8   9
( 5341 1qho_A)  ( 2311 1hx0_A)     0.6632   0.6632   3.8427 (   2   14   28)   0     0.9975   0.9975    8   8
( 5341 1qho_A)  ( 2622 1iv8_A)     0.9994   0.9994   3.6126 (   0   16   28)   0     0.9994   0.9994    8   8
( 5341 1qho_A)  ( 2687 1j0h_A)     0.8749   0.8749   2.7363 (   0   11   21)   0     0.8749   0.8749    8   8
( 5341 1qho_A)  ( 2879 1ji1_A)     0.9648   0.8687   3.2268 (   1   16   28)   0     0.9951   0.8861    8   9
( 5341 1qho_A)  ( 2882 1ji2_A)     0.7651   0.7651   3.5597 (   2   17   28)   0     0.9519   0.9519    8   8
( 5341 1qho_A)  ( 3426 1ktb_A)     0.8221   0.8221   3.1425 (   1   12   21)   0     0.8221   0.8221    8   8
( 5341 1qho_A)  ( 3839 1m53_A)     0.8747   0.9995   3.3977 (   0   11   21)   0     0.8747   0.9995    8   7
( 5341 1qho_A)  ( 3878 1m7x_A)     0.8748   0.9996   3.1068 (   0   10   21)   0     0.8748   0.9996    8   7
( 5341 1qho_A)  ( 4072 1mxg_A)     0.6239   0.7121   7.4268 (   0    5   10)   0     0.7491   0.8555    8   7
( 5341 1qho_A)  ( 4335 1nof_A)     0.8730   0.6993   5.6643 (   0   11   21)   0     0.8730   0.6993    8  10
( 5341 1qho_A)  ( 4646 1ogs_A)     0.6246   0.4166   5.9227 (   0    4   10)   0     0.6246   0.4166    8  12
( 5341 1qho_A)  ( 5341 1qho_A)     1.0000   1.0000   0.0000 (   0   18   28)   0     1.0000   1.0000    8   8
( 5341 1qho_A)  ( 5472 1qw9_A)     0.9963   0.7265   5.6051 (   0   14   28)   0     0.9963   0.7265    8  11
( 5341 1qho_A)  ( 5546 1r46_A)     0.9996   0.8887   3.1356 (   0   16   28)   0     0.9996   0.8887    8   9
( 5341 1qho_A)  ( 5953 1uas_A)     0.9641   0.9641   4.2023 (   1   16   28)   0     0.9641   0.9641    8   8
( 5341 1qho_A)  ( 6023 1uhv_A)     0.6247   0.4545   5.3946 (   0    2   10)   0     0.8718   0.6357    8  11
( 5341 1qho_A)  ( 6067 1uok  )     0.8748   0.9996   3.1308 (   0    9   21)   0     0.8748   0.9996    8   7
( 5341 1qho_A)  ( 6644 7taa  )     0.8745   0.7775   3.9143 (   0   12   21)   0     0.9515   0.8607    8   9

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