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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5472 1qw9_A)  (  335 1bag  )     0.6363   0.9990   4.0173 (   0    9   21)   0     0.6363   0.9990   11   7
( 5472 1qw9_A)  (  367 1bf2  )     0.7272   0.7999   2.9467 (   0   16   28)   0     0.7272   0.7999   11  10
( 5472 1qw9_A)  ( 1028 1e43_A)     0.6363   0.7776   3.5243 (   0   10   21)   0     0.6363   0.7776   11   9
( 5472 1qw9_A)  ( 1729 1g5a_A)     0.4545   0.7137   5.3372 (   0    5   10)   0     0.6125   0.8403   11   7
( 5472 1qw9_A)  ( 1839 1gjw_A)     0.4545   0.7139   4.7408 (   0    4   10)   0     0.4545   0.7139   11   7
( 5472 1qw9_A)  ( 2063 1h3g_A)     0.6363   0.7777   2.9435 (   0   11   21)   0     0.6363   0.7777   11   9
( 5472 1qw9_A)  ( 2232 1hl9_A)     0.7271   0.8885   3.6517 (   0   17   28)   0     0.7271   0.8885   11   9
( 5472 1qw9_A)  ( 2311 1hx0_A)     0.5454   0.7495   4.8165 (   0    4   15)   0     0.6359   0.8727   11   8
( 5472 1qw9_A)  ( 2622 1iv8_A)     0.7271   0.9993   3.7383 (   0   18   28)   0     0.7271   0.9993   11   8
( 5472 1qw9_A)  ( 2687 1j0h_A)     0.6363   0.8747   3.6255 (   0   12   21)   0     0.6363   0.8747   11   8
( 5472 1qw9_A)  ( 2879 1ji1_A)     0.7270   0.8880   4.5103 (   0   17   28)   0     0.7270   0.8880   11   9
( 5472 1qw9_A)  ( 2882 1ji2_A)     0.7271   0.9989   4.0880 (   0   17   28)   0     0.7271   0.9989   11   8
( 5472 1qw9_A)  ( 3426 1ktb_A)     0.5453   0.7493   5.3064 (   0    9   15)   0     0.5453   0.7493   11   8
( 5472 1qw9_A)  ( 3839 1m53_A)     0.6363   0.9998   2.5243 (   0   11   21)   0     0.6363   0.9998   11   7
( 5472 1qw9_A)  ( 3878 1m7x_A)     0.6362   0.9988   4.2505 (   0    9   21)   0     0.6362   0.9988   11   7
( 5472 1qw9_A)  ( 4072 1mxg_A)     0.4544   0.7129   6.6108 (   0    6   10)   0     0.5454   0.8567   11   7
( 5472 1qw9_A)  ( 4335 1nof_A)     0.9087   0.9993   3.6351 (   0   29   45)   0     0.9087   0.9993   11  10
( 5472 1qw9_A)  ( 4646 1ogs_A)     0.4545   0.4166   5.3609 (   0    4   10)   0     0.9082   0.8328   11  12
( 5472 1qw9_A)  ( 5341 1qho_A)     0.7265   0.9963   5.6051 (   0   14   28)   0     0.7265   0.9963   11   8
( 5472 1qw9_A)  ( 5472 1qw9_A)     1.0000   1.0000   0.0000 (   0   39   55)   0     1.0000   1.0000   11  11
( 5472 1qw9_A)  ( 5546 1r46_A)     0.4544   0.5551   6.9515 (   0    3   10)   0     0.7259   0.8852   11   9
( 5472 1qw9_A)  ( 5953 1uas_A)     0.7270   0.9984   4.5084 (   0   17   28)   0     0.7270   0.9984   11   8
( 5472 1qw9_A)  ( 6023 1uhv_A)     0.5453   0.5453   5.0268 (   0    4   15)   0     0.5453   0.5453   11  11
( 5472 1qw9_A)  ( 6067 1uok  )     0.6363   0.9997   2.8505 (   0   11   21)   0     0.6363   0.9997   11   7
( 5472 1qw9_A)  ( 6644 7taa  )     0.5453   0.6663   5.1240 (   0   10   15)   0     0.5454   0.6665   11   9

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