-------------------------------------------------------------------------------------------------------------------------
Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
-------------------------------------------------------------------------------------------------------------------------
( 5546 1r46_A) ( 335 1bag ) 0.7775 0.9992 3.8637 ( 0 10 21) 0 0.7775 0.9992 9 7
( 5546 1r46_A) ( 367 1bf2 ) 0.8885 0.7998 3.5619 ( 0 17 28) 0 0.8885 0.7998 9 10
( 5546 1r46_A) ( 1028 1e43_A) 0.7776 0.7776 3.5479 ( 0 12 21) 0 0.7776 0.7776 9 9
( 5546 1r46_A) ( 1729 1g5a_A) 0.7777 0.9997 2.9266 ( 0 13 21) 0 0.7777 0.9997 9 7
( 5546 1r46_A) ( 1839 1gjw_A) 0.5554 0.7138 5.0710 ( 0 4 10) 0 0.6661 0.8551 9 7
( 5546 1r46_A) ( 2063 1h3g_A) 0.8799 0.8799 4.0551 ( 1 20 28) 0 0.8799 0.8799 9 9
( 5546 1r46_A) ( 2232 1hl9_A) 0.8880 0.8880 4.5354 ( 0 21 28) 0 0.8880 0.8880 9 9
( 5546 1r46_A) ( 2311 1hx0_A) 0.8558 0.9435 3.3302 ( 1 14 28) 0 0.8877 0.9979 9 8
( 5546 1r46_A) ( 2622 1iv8_A) 0.8886 0.9996 3.2773 ( 0 20 28) 0 0.8886 0.9996 9 8
( 5546 1r46_A) ( 2687 1j0h_A) 0.7776 0.8747 3.4351 ( 0 15 21) 0 0.7776 0.8747 9 8
( 5546 1r46_A) ( 2879 1ji1_A) 0.8784 0.8784 2.9872 ( 1 19 28) 0 0.8784 0.8784 9 9
( 5546 1r46_A) ( 2882 1ji2_A) 0.8782 0.9811 3.5557 ( 1 19 28) 0 0.8782 0.9811 9 8
( 5546 1r46_A) ( 3426 1ktb_A) 0.7777 0.8749 2.3008 ( 0 14 21) 0 0.7777 0.8749 9 8
( 5546 1r46_A) ( 3839 1m53_A) 0.7777 0.9998 2.7908 ( 0 13 21) 0 0.7777 0.9998 9 7
( 5546 1r46_A) ( 3878 1m7x_A) 0.7775 0.9992 3.8416 ( 0 12 21) 0 0.7775 0.9992 9 7
( 5546 1r46_A) ( 4072 1mxg_A) 0.6666 0.8569 3.2555 ( 0 7 15) 0 0.6666 0.8569 9 7
( 5546 1r46_A) ( 4335 1nof_A) 0.8872 0.7990 5.3181 ( 0 16 28) 0 0.8872 0.7990 9 10
( 5546 1r46_A) ( 4646 1ogs_A) 0.4444 0.3333 5.9117 ( 0 2 6) 0 0.7776 0.5833 9 12
( 5546 1r46_A) ( 5341 1qho_A) 0.8887 0.9996 3.1356 ( 0 16 28) 0 0.8887 0.9996 9 8
( 5546 1r46_A) ( 5472 1qw9_A) 0.5551 0.4544 6.9515 ( 0 3 10) 0 0.8852 0.7259 9 11
( 5546 1r46_A) ( 5546 1r46_A) 1.0000 1.0000 0.0000 ( 0 28 36) 0 1.0000 1.0000 9 9
( 5546 1r46_A) ( 5953 1uas_A) 0.8784 0.9814 3.1331 ( 1 19 28) 0 0.8784 0.9814 9 8
( 5546 1r46_A) ( 6023 1uhv_A) 0.8867 0.7265 5.6964 ( 0 10 28) 0 0.8867 0.7265 9 11
( 5546 1r46_A) ( 6067 1uok ) 0.7777 0.9998 2.6957 ( 0 11 21) 0 0.7777 0.9998 9 7
( 5546 1r46_A) ( 6644 7taa ) 0.8800 0.8800 3.6961 ( 1 20 28) 0 0.8800 0.8800 9 9
-------------------------------------------------------------------------------------------------------------------------