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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6644 7taa  )  (  335 1bag  )     0.7777   0.9996   3.1238 (   0   13   21)   0     0.7777   0.9996    9   7
( 6644 7taa  )  (  367 1bf2  )     0.8760   0.7923   2.9648 (   1   18   28)   0     0.8760   0.7923    9  10
( 6644 7taa  )  ( 1028 1e43_A)     0.7777   0.7777   2.5966 (   0   15   21)   0     0.7777   0.7777    9   9
( 6644 7taa  )  ( 1729 1g5a_A)     0.7673   0.9651   2.0550 (   1   16   21)   0     0.7673   0.9651    9   7
( 6644 7taa  )  ( 1839 1gjw_A)     0.6666   0.8568   3.8006 (   0    9   15)   0     0.6666   0.8568    9   7
( 6644 7taa  )  ( 2063 1h3g_A)     0.8887   0.8887   3.1485 (   0   23   28)   0     0.8887   0.8887    9   9
( 6644 7taa  )  ( 2232 1hl9_A)     0.8886   0.8886   3.4377 (   0   22   28)   0     0.8886   0.8886    9   9
( 6644 7taa  )  ( 2311 1hx0_A)     0.8888   0.9999   2.1820 (   0   16   28)   0     0.8888   0.9999    9   8
( 6644 7taa  )  ( 2622 1iv8_A)     0.8804   0.9848   2.4005 (   1   20   28)   0     0.8804   0.9848    9   8
( 6644 7taa  )  ( 2687 1j0h_A)     0.8886   0.9995   3.3398 (   0   20   28)   0     0.8886   0.9995    9   8
( 6644 7taa  )  ( 2879 1ji1_A)     0.8888   0.8888   2.6874 (   0   20   28)   0     0.8888   0.8888    9   9
( 6644 7taa  )  ( 2882 1ji2_A)     0.8888   0.9998   2.5812 (   0   22   28)   0     0.8888   0.9998    9   8
( 6644 7taa  )  ( 3426 1ktb_A)     0.7777   0.8749   2.4115 (   0   14   21)   0     0.7777   0.8749    9   8
( 6644 7taa  )  ( 3839 1m53_A)     0.7776   0.9994   3.5486 (   0   13   21)   0     0.7776   0.9994    9   7
( 6644 7taa  )  ( 3878 1m7x_A)     0.7777   0.9998   2.5125 (   0   13   21)   0     0.7777   0.9998    9   7
( 6644 7taa  )  ( 4072 1mxg_A)     0.6667   0.8571   1.9676 (   0   11   15)   0     0.6667   0.8571    9   7
( 6644 7taa  )  ( 4335 1nof_A)     0.8884   0.7997   3.8535 (   0   18   28)   0     0.8884   0.7997    9  10
( 6644 7taa  )  ( 4646 1ogs_A)     0.6664   0.4999   4.5941 (   0    5   15)   0     0.6664   0.4999    9  12
( 6644 7taa  )  ( 5341 1qho_A)     0.7775   0.8745   3.9143 (   0   12   21)   0     0.8607   0.9515    9   8
( 6644 7taa  )  ( 5472 1qw9_A)     0.6663   0.5453   5.1240 (   0   10   15)   0     0.6663   0.5453    9  11
( 6644 7taa  )  ( 5546 1r46_A)     0.8800   0.8800   3.6961 (   1   20   28)   0     0.8800   0.8800    9   9
( 6644 7taa  )  ( 5953 1uas_A)     0.8888   0.9999   2.2801 (   0   20   28)   0     0.8888   0.9999    9   8
( 6644 7taa  )  ( 6023 1uhv_A)     0.8884   0.7271   3.8678 (   0   11   28)   0     0.8884   0.7271    9  11
( 6644 7taa  )  ( 6067 1uok  )     0.7776   0.9994   3.4960 (   0   10   21)   0     0.7776   0.9994    9   7
( 6644 7taa  )  ( 6644 7taa  )     1.0000   1.0000   0.0000 (   0   32   36)   0     1.0000   1.0000    9   9

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