------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1624 1ft9_A) ( 701 1cx4_A) 0.7257 0.6657 2.6044 ( 1 24 28) 0 0.7257 0.6657 11 12 ( 1624 1ft9_A) ( 702 1cx4_A) 0.8170 0.7493 2.0747 ( 1 30 36) 0 0.8170 0.7493 11 12 ( 1624 1ft9_A) ( 799 1dcs ) 0.5653 0.3403 3.2318 ( 3 19 28) 0 0.5653 0.3403 11 23 ( 1624 1ft9_A) ( 836 1dgw_A) 0.7271 0.5333 3.8362 ( 0 14 28) 0 0.7271 0.5333 11 15 ( 1624 1ft9_A) ( 930 1ds1_A) 0.7841 0.4079 3.9949 ( 2 25 36) 0 0.7841 0.4079 11 22 ( 1624 1ft9_A) ( 1045 1e5s_A) 0.7143 0.4979 4.3672 ( 1 14 28) 0 0.7143 0.4979 11 16 ( 1624 1ft9_A) ( 1230 1ep0_A) 0.6195 0.4629 4.8797 ( 1 11 21) 0 0.8164 0.5996 11 15 ( 1624 1ft9_A) ( 1312 1eyb_A) 0.7195 0.2758 4.0914 ( 1 16 28) 0 0.7195 0.2758 11 29 ( 1624 1ft9_A) ( 1505 1fi2_A) 0.7174 0.5684 3.5911 ( 1 15 28) 0 0.7174 0.5684 11 14 ( 1624 1ft9_A) ( 1624 1ft9_A) 1.0000 1.0000 0.0000 ( 0 50 55) 0 1.0000 1.0000 11 11 ( 1624 1ft9_A) ( 1894 1gp6_A) 0.4361 0.2266 8.0285 ( 1 7 10) 0 0.4361 0.2866 11 22 ( 1624 1ft9_A) ( 1946 1gtf_A) 0.3636 0.5712 5.4742 ( 0 2 6) 0 0.6363 0.9997 11 7 ( 1624 1ft9_A) ( 2049 1h2k_A) 0.7103 0.3197 3.7380 ( 1 13 28) 0 0.8130 0.3899 11 25 ( 1624 1ft9_A) ( 2409 1i5z_A) 0.9082 0.9985 3.1779 ( 1 39 45) 0 0.9082 0.9985 11 10 ( 1624 1ft9_A) ( 2477 1ig0_A) 0.7270 0.7995 4.4639 ( 0 13 28) 0 0.7270 0.7995 11 10 ( 1624 1ft9_A) ( 2479 1ig3_A) 0.7268 0.9976 4.9996 ( 0 12 28) 0 0.7270 0.9989 11 8 ( 1624 1ft9_A) ( 2699 1j1l_A) 0.7173 0.3198 4.1741 ( 1 15 28) 0 0.7174 0.3198 11 25 ( 1624 1ft9_A) ( 2735 1j58_A) 0.7195 0.2856 4.0114 ( 1 16 28) 0 0.7195 0.2856 11 28 ( 1624 1ft9_A) ( 3004 1jop_A) 0.7211 0.6627 3.9358 ( 1 17 28) 0 0.7233 0.6641 11 12 ( 1624 1ft9_A) ( 3032 1jr7_A) 0.3636 0.1739 4.5539 ( 0 6 6) 0 0.6056 0.4143 11 23 ( 1624 1ft9_A) ( 3066 1juh_A) 0.6835 0.3070 4.8103 ( 2 20 28) 0 0.7221 0.3076 11 26 ( 1624 1ft9_A) ( 3708 1lrh_A) 0.7195 0.6120 3.9759 ( 1 16 28) 0 0.7195 0.6120 11 13 ( 1624 1ft9_A) ( 3833 1m4o_A) 0.3636 0.3333 3.9834 ( 0 4 6) 0 0.3636 0.3333 11 12 ( 1624 1ft9_A) ( 4207 1ne6_A) 0.4541 0.3844 8.9188 ( 0 7 10) 0 0.4541 0.3844 11 13 ( 1624 1ft9_A) ( 4421 1nx4_A) 0.3636 0.2105 4.2094 ( 0 6 6) 0 0.6053 0.4789 11 19 ( 1624 1ft9_A) ( 4429 1nxm_A) 0.5995 0.4719 3.8133 ( 2 14 28) 0 0.7549 0.5512 11 16 ( 1624 1ft9_A) ( 4484 1o4t_A) 0.7102 0.7102 4.3036 ( 1 13 28) 0 0.7145 0.7145 11 11 ( 1624 1ft9_A) ( 4501 1o5l_A) 0.9087 0.9087 3.6605 ( 0 39 45) 0 0.9087 0.9087 11 11 ( 1624 1ft9_A) ( 4503 1o5u_A) 0.6561 0.6795 4.3930 ( 4 30 36) 0 0.6836 0.7340 11 10 ( 1624 1ft9_A) ( 4536 1o7f_A) 0.4069 0.4031 6.2571 ( 9 37 45) 0 0.6324 0.5367 11 13 ( 1624 1ft9_A) ( 4538 1o7f_A) 0.6270 0.6270 2.4232 ( 3 23 28) 0 0.6270 0.6270 11 11 ( 1624 1ft9_A) ( 4600 1od5_A) 0.7271 0.5000 3.6457 ( 0 15 28) 0 0.7271 0.5000 11 16 ( 1624 1ft9_A) ( 4601 1od5_A) 0.7173 0.4984 4.1775 ( 1 15 28) 0 0.7173 0.4984 11 16 ( 1624 1ft9_A) ( 4606 1odm_A) 0.4361 0.2490 7.5165 ( 1 7 10) 0 0.4545 0.2838 11 20 ( 1624 1ft9_A) ( 4631 1ofn_A) 0.7271 0.4706 3.7042 ( 0 14 28) 0 0.8167 0.5292 11 17 ( 1624 1ft9_A) ( 4671 1oih_A) 0.4543 0.2381 7.7936 ( 0 8 10) 0 0.6526 0.3772 11 21 ( 1624 1ft9_A) ( 4713 1omi_A) 0.9078 0.9980 3.4341 ( 1 36 45) 0 0.9078 0.9980 11 10 ( 1624 1ft9_A) ( 4782 1otj_A) 0.3636 0.1905 4.6905 ( 0 5 6) 0 0.7201 0.3807 11 21 ( 1624 1ft9_A) ( 5002 1pg6_A) 0.5194 0.2718 3.9792 ( 1 8 15) 0 0.8128 0.4089 11 22 ( 1624 1ft9_A) ( 5054 1pmi ) 0.6754 0.2284 3.5577 ( 2 19 28) 0 0.7272 0.2628 11 35 ( 1624 1ft9_A) ( 5193 1q3e_A) 0.9076 0.6248 4.0239 ( 1 37 45) 0 0.9076 0.6248 11 16 ( 1624 1ft9_A) ( 5480 1qwr_A) 0.7224 0.2857 3.2759 ( 1 18 28) 0 0.7698 0.3209 11 28 ( 1624 1ft9_A) ( 5489 1qxr_A) 0.4233 0.3467 5.1531 ( 1 6 10) 0 0.6012 0.4885 11 14 ( 1624 1ft9_A) ( 5604 1rc6_A) 0.7270 0.3809 4.1430 ( 0 15 28) 0 0.7272 0.3809 11 21 ( 1624 1ft9_A) ( 5840 1sq4_A) 0.6363 0.3684 4.1071 ( 0 12 21) 0 0.6363 0.4041 11 19 ( 1624 1ft9_A) ( 5856 1su4_A) 0.3636 0.6664 4.8303 ( 0 1 6) 2 0.3636 0.6664 11 6 ( 1624 1ft9_A) ( 6277 1vj2_A) 0.7195 0.7195 4.0992 ( 1 16 28) 0 0.7195 0.7195 11 11 ( 1624 1ft9_A) ( 6395 2arc_A) 0.8118 0.6895 7.2033 ( 1 24 36) 0 0.8252 0.7286 11 13 -------------------------------------------------------------------------------------------------------------------------