------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2735 1j58_A) ( 701 1cx4_A) 0.2498 0.5723 3.9782 ( 1 11 21) 0 0.2851 0.6312 28 12 ( 2735 1j58_A) ( 702 1cx4_A) 0.2498 0.5723 3.4975 ( 1 11 21) 0 0.3208 0.7128 28 12 ( 2735 1j58_A) ( 799 1dcs ) 0.2143 0.2609 3.4672 ( 0 8 15) 0 0.3925 0.4773 28 23 ( 2735 1j58_A) ( 836 1dgw_A) 0.4628 0.8354 2.4440 ( 4 55 78) 0 0.4628 0.8354 28 15 ( 2735 1j58_A) ( 930 1ds1_A) 0.1785 0.2270 6.4782 ( 1 9 10) 0 0.3092 0.3534 28 22 ( 2735 1j58_A) ( 1045 1e5s_A) 0.3542 0.5833 5.1013 ( 3 25 45) 0 0.3766 0.6120 28 16 ( 2735 1j58_A) ( 1230 1ep0_A) 0.2855 0.5296 2.3575 ( 1 13 28) 0 0.3928 0.7325 28 15 ( 2735 1j58_A) ( 1312 1eyb_A) 0.3214 0.3103 2.8865 ( 0 21 36) 0 0.5935 0.5746 28 29 ( 2735 1j58_A) ( 1505 1fi2_A) 0.4286 0.8569 2.0080 ( 1 46 66) 0 0.4286 0.8569 28 14 ( 2735 1j58_A) ( 1624 1ft9_A) 0.2856 0.7195 4.0114 ( 1 16 28) 0 0.2857 0.7271 28 11 ( 2735 1j58_A) ( 1894 1gp6_A) 0.1786 0.2273 7.1715 ( 0 4 10) 0 0.4209 0.5216 28 22 ( 2735 1j58_A) ( 1946 1gtf_A) 0.2143 0.8570 2.9036 ( 0 5 15) 0 0.2500 0.9998 28 7 ( 2735 1j58_A) ( 2049 1h2k_A) 0.1786 0.2000 3.1291 ( 0 4 10) 0 0.3967 0.4394 28 25 ( 2735 1j58_A) ( 2409 1i5z_A) 0.2498 0.6738 4.1445 ( 1 11 21) 0 0.2857 0.7904 28 10 ( 2735 1j58_A) ( 2477 1ig0_A) 0.2857 0.7998 3.3598 ( 0 11 28) 0 0.2857 0.7998 28 10 ( 2735 1j58_A) ( 2479 1ig3_A) 0.2857 0.9984 4.4989 ( 0 12 28) 0 0.2857 0.9984 28 8 ( 2735 1j58_A) ( 2699 1j1l_A) 0.7140 0.7995 4.0790 ( 2 96 190) 0 0.7140 0.7995 28 25 ( 2735 1j58_A) ( 2735 1j58_A) 1.0000 1.0000 0.0000 ( 0 292 378) 0 1.0000 1.0000 28 28 ( 2735 1j58_A) ( 3004 1jop_A) 0.3571 0.8283 5.6551 ( 1 23 45) 0 0.3928 0.9161 28 12 ( 2735 1j58_A) ( 3032 1jr7_A) 0.1429 0.1739 3.5383 ( 0 3 6) 0 0.4118 0.4815 28 23 ( 2735 1j58_A) ( 3066 1juh_A) 0.3214 0.3461 2.7630 ( 1 22 36) 0 0.4366 0.4467 28 26 ( 2735 1j58_A) ( 3708 1lrh_A) 0.3571 0.7691 3.4101 ( 0 23 45) 0 0.3920 0.8102 28 13 ( 2735 1j58_A) ( 3833 1m4o_A) 0.1782 0.3954 4.3344 ( 1 6 10) 0 0.2499 0.5786 28 12 ( 2735 1j58_A) ( 4207 1ne6_A) 0.2516 0.3113 5.8063 ( 6 19 28) 0 0.2857 0.6130 28 13 ( 2735 1j58_A) ( 4421 1nx4_A) 0.1784 0.2618 7.7462 ( 1 7 10) 0 0.3381 0.4194 28 19 ( 2735 1j58_A) ( 4429 1nxm_A) 0.2855 0.4973 2.2557 ( 1 13 28) 0 0.4284 0.7474 28 16 ( 2735 1j58_A) ( 4484 1o4t_A) 0.3542 0.7290 3.7543 ( 3 25 45) 0 0.3928 0.9950 28 11 ( 2735 1j58_A) ( 4501 1o5l_A) 0.2498 0.6196 4.0524 ( 1 11 21) 0 0.2857 0.7222 28 11 ( 2735 1j58_A) ( 4503 1o5u_A) 0.2138 0.5386 2.8714 ( 1 7 15) 0 0.3214 0.8936 28 10 ( 2735 1j58_A) ( 4536 1o7f_A) 0.2498 0.5310 3.7465 ( 1 11 21) 0 0.2876 0.6147 28 13 ( 2735 1j58_A) ( 4538 1o7f_A) 0.2500 0.6363 3.0369 ( 0 10 21) 0 0.2857 0.7207 28 11 ( 2735 1j58_A) ( 4600 1od5_A) 0.4286 0.7498 2.5755 ( 1 45 66) 0 0.4286 0.7498 28 16 ( 2735 1j58_A) ( 4601 1od5_A) 0.4643 0.8124 2.0994 ( 1 54 78) 0 0.5357 0.9369 28 16 ( 2735 1j58_A) ( 4606 1odm_A) 0.1786 0.2500 4.3726 ( 0 6 10) 0 0.3717 0.4794 28 20 ( 2735 1j58_A) ( 4631 1ofn_A) 0.2500 0.4118 1.9935 ( 0 12 21) 0 0.4285 0.7049 28 17 ( 2735 1j58_A) ( 4671 1oih_A) 0.1786 0.2381 4.9248 ( 0 7 10) 0 0.3188 0.4178 28 21 ( 2735 1j58_A) ( 4713 1omi_A) 0.2526 0.3180 5.1949 ( 5 16 28) 0 0.2856 0.7885 28 10 ( 2735 1j58_A) ( 4782 1otj_A) 0.1429 0.1905 4.9357 ( 0 3 6) 0 0.3340 0.4019 28 21 ( 2735 1j58_A) ( 5002 1pg6_A) 0.2856 0.3633 4.1508 ( 1 15 28) 0 0.4531 0.5186 28 22 ( 2735 1j58_A) ( 5054 1pmi ) 0.2368 0.2337 5.3791 ( 23 55 105) 0 0.6697 0.5487 28 35 ( 2735 1j58_A) ( 5193 1q3e_A) 0.2499 0.4356 3.8506 ( 1 12 21) 0 0.3140 0.4991 28 16 ( 2735 1j58_A) ( 5480 1qwr_A) 0.2857 0.2857 2.5024 ( 0 14 28) 0 0.7120 0.7120 28 28 ( 2735 1j58_A) ( 5489 1qxr_A) 0.3214 0.6428 2.3490 ( 0 21 36) 0 0.3661 0.6428 28 14 ( 2735 1j58_A) ( 5604 1rc6_A) 0.6286 0.7488 4.1769 ( 9 79 171) 0 0.6411 0.7805 28 21 ( 2735 1j58_A) ( 5840 1sq4_A) 0.2857 0.4210 3.3569 ( 0 16 28) 0 0.5498 0.6098 28 19 ( 2735 1j58_A) ( 5856 1su4_A) 0.1429 0.6661 5.7007 ( 0 4 6) 0 0.2143 0.9978 28 6 ( 2735 1j58_A) ( 6277 1vj2_A) 0.3546 0.7453 4.2107 ( 3 26 45) 0 0.3546 0.8035 28 11 ( 2735 1j58_A) ( 6395 2arc_A) 0.3214 0.6892 2.8830 ( 1 19 36) 0 0.3561 0.7282 28 13 -------------------------------------------------------------------------------------------------------------------------