------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3066 1juh_A) ( 701 1cx4_A) 0.1970 0.2133 4.6764 ( 7 15 21) 0 0.2975 0.5833 26 12 ( 3066 1juh_A) ( 702 1cx4_A) 0.2308 0.5000 3.5044 ( 0 9 15) 0 0.3076 0.6634 26 12 ( 3066 1juh_A) ( 799 1dcs ) 0.3842 0.4340 3.5917 ( 2 30 45) 0 0.3892 0.4340 26 23 ( 3066 1juh_A) ( 836 1dgw_A) 0.3462 0.6000 3.1301 ( 0 24 36) 0 0.3943 0.6000 26 15 ( 3066 1juh_A) ( 930 1ds1_A) 0.2253 0.2412 4.8917 ( 3 8 21) 1 0.3418 0.3516 26 22 ( 3066 1juh_A) ( 1045 1e5s_A) 0.2692 0.4375 3.6320 ( 0 9 21) 0 0.3071 0.4375 26 16 ( 3066 1juh_A) ( 1230 1ep0_A) 0.2692 0.4667 1.7677 ( 0 12 21) 0 0.3845 0.6653 26 15 ( 3066 1juh_A) ( 1312 1eyb_A) 0.2308 0.2069 5.5827 ( 0 8 15) 0 0.6444 0.5807 26 29 ( 3066 1juh_A) ( 1505 1fi2_A) 0.3461 0.6422 2.6699 ( 1 26 36) 0 0.4134 0.6686 26 14 ( 3066 1juh_A) ( 1624 1ft9_A) 0.3070 0.6835 4.8103 ( 2 20 28) 0 0.3076 0.7221 26 11 ( 3066 1juh_A) ( 1894 1gp6_A) 0.3846 0.4545 3.5216 ( 0 31 45) 0 0.3938 0.4545 26 22 ( 3066 1juh_A) ( 1946 1gtf_A) 0.2308 0.8571 2.4133 ( 0 5 15) 0 0.2692 0.9998 26 7 ( 3066 1juh_A) ( 2049 1h2k_A) 0.1923 0.2000 6.9775 ( 0 8 10) 0 0.3825 0.3974 26 25 ( 3066 1juh_A) ( 2409 1i5z_A) 0.1538 0.4000 3.5793 ( 0 4 6) 0 0.2692 0.6999 26 10 ( 3066 1juh_A) ( 2477 1ig0_A) 0.2692 0.6999 3.6721 ( 0 8 21) 0 0.3190 0.7518 26 10 ( 3066 1juh_A) ( 2479 1ig3_A) 0.2308 0.7498 3.7240 ( 0 5 15) 0 0.2692 0.8745 26 8 ( 3066 1juh_A) ( 2699 1j1l_A) 0.4832 0.4866 3.6260 ( 21 107 171) 0 0.4832 0.4866 26 25 ( 3066 1juh_A) ( 2735 1j58_A) 0.3461 0.3214 2.7630 ( 1 22 36) 0 0.4467 0.4366 26 28 ( 3066 1juh_A) ( 3004 1jop_A) 0.3462 0.7499 2.8840 ( 0 22 36) 0 0.3462 0.7499 26 12 ( 3066 1juh_A) ( 3032 1jr7_A) 0.3436 0.3867 4.1981 ( 3 25 36) 1 0.3436 0.3867 26 23 ( 3066 1juh_A) ( 3066 1juh_A) 1.0000 1.0000 0.0000 ( 0 278 325) 0 1.0000 1.0000 26 26 ( 3066 1juh_A) ( 3708 1lrh_A) 0.3462 0.6923 1.9440 ( 0 24 36) 0 0.3462 0.6923 26 13 ( 3066 1juh_A) ( 3833 1m4o_A) 0.1918 0.3954 4.6534 ( 1 6 10) 0 0.2376 0.4166 26 12 ( 3066 1juh_A) ( 4207 1ne6_A) 0.1923 0.3846 3.2169 ( 0 4 10) 0 0.3076 0.6132 26 13 ( 3066 1juh_A) ( 4421 1nx4_A) 0.3013 0.3940 3.0858 ( 3 17 28) 0 0.3855 0.4569 26 19 ( 3066 1juh_A) ( 4429 1nxm_A) 0.2692 0.4375 2.2751 ( 0 11 21) 0 0.4601 0.7339 26 16 ( 3066 1juh_A) ( 4484 1o4t_A) 0.3846 0.9090 2.7589 ( 0 31 45) 0 0.3846 0.9090 26 11 ( 3066 1juh_A) ( 4501 1o5l_A) 0.1538 0.3636 4.8034 ( 0 4 6) 0 0.3076 0.7230 26 11 ( 3066 1juh_A) ( 4503 1o5u_A) 0.2306 0.5820 3.3446 ( 1 10 15) 0 0.2854 0.5820 26 10 ( 3066 1juh_A) ( 4536 1o7f_A) 0.1538 0.3077 3.1018 ( 0 4 6) 0 0.2692 0.5384 26 13 ( 3066 1juh_A) ( 4538 1o7f_A) 0.2308 0.5454 2.7578 ( 0 8 15) 0 0.2691 0.6243 26 11 ( 3066 1juh_A) ( 4600 1od5_A) 0.2692 0.4375 4.8675 ( 0 12 21) 0 0.3423 0.5249 26 16 ( 3066 1juh_A) ( 4601 1od5_A) 0.3841 0.6197 3.0511 ( 2 29 45) 0 0.3841 0.6197 26 16 ( 3066 1juh_A) ( 4606 1odm_A) 0.1923 0.2500 4.1498 ( 0 7 10) 0 0.4356 0.4999 26 20 ( 3066 1juh_A) ( 4631 1ofn_A) 0.2308 0.3529 2.0287 ( 0 6 15) 0 0.4163 0.5983 26 17 ( 3066 1juh_A) ( 4671 1oih_A) 0.3075 0.3804 2.9035 ( 1 14 28) 0 0.4392 0.5150 26 21 ( 3066 1juh_A) ( 4713 1omi_A) 0.2301 0.5386 3.3255 ( 1 7 15) 0 0.3008 0.5997 26 10 ( 3066 1juh_A) ( 4782 1otj_A) 0.3077 0.3810 2.9399 ( 0 13 28) 0 0.3461 0.4285 26 21 ( 3066 1juh_A) ( 5002 1pg6_A) 0.2308 0.2727 3.3981 ( 0 8 15) 0 0.3454 0.3671 26 22 ( 3066 1juh_A) ( 5054 1pmi ) 0.2308 0.1714 7.0997 ( 0 11 15) 0 0.3600 0.3115 26 35 ( 3066 1juh_A) ( 5193 1q3e_A) 0.2308 0.3750 3.1154 ( 0 8 15) 0 0.3076 0.4994 26 16 ( 3066 1juh_A) ( 5480 1qwr_A) 0.2308 0.2143 2.7112 ( 0 6 15) 0 0.4455 0.4173 26 28 ( 3066 1juh_A) ( 5489 1qxr_A) 0.3846 0.7142 2.9178 ( 0 29 45) 0 0.3912 0.7142 26 14 ( 3066 1juh_A) ( 5604 1rc6_A) 0.3462 0.4286 2.9555 ( 0 21 36) 0 0.3852 0.4286 26 21 ( 3066 1juh_A) ( 5840 1sq4_A) 0.6574 0.8171 3.1446 ( 10 100 153) 0 0.6574 0.8171 26 19 ( 3066 1juh_A) ( 5856 1su4_A) 0.2308 0.9995 3.4637 ( 0 8 15) 0 0.2308 0.9995 26 6 ( 3066 1juh_A) ( 6277 1vj2_A) 0.3846 0.9090 2.1769 ( 0 31 45) 0 0.3846 0.9090 26 11 ( 3066 1juh_A) ( 6395 2arc_A) 0.2692 0.5385 2.0736 ( 0 11 21) 0 0.3394 0.5385 26 13 -------------------------------------------------------------------------------------------------------------------------