------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [4503, 701]: Comparing 1o5u_A and 1cx4_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 27 (11 H + 16 S) secondary structure elements in 1cx4_A, of which 12 satisfy the size requirements. 1.91251 [ 2.00000] ((2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 8) (9 . 11) (10 . 12)) 4.948 {4/22:28} B:0 2.00003 [ 2.40002] ((4 . 4) (5 . 5) (6 . 6) (8 . 11) (9 . 12)) 2.749 {0/4:10} B:0 2.50022 [ 3.00013] ((2 . 1) (7 . 5) (8 . 6) (9 . 7)) 5.472 {0/6:6} B:0 2.50022 [ 3.00013] ((4 . 4) (5 . 5) (6 . 6) (10 . 11)) 5.500 {0/3:6} B:0 2.97316 [ 3.31028] ((3 . 5) (4 . 6) (5 . 7) (6 . 8)) 5.586 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.6917 [and 1/min{score2}: 0.5800] [4503, 702]: Comparing 1o5u_A and 1cx4_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 27 (11 H + 16 S) secondary structure elements in 1cx4_A, of which 12 satisfy the size requirements. 1.55879 [ 1.70874] ((2 . 16) (3 . 17) (4 . 18) (5 . 19) (6 . 20) (7 . 21) (9 . 24) (10 . 25)) 4.242 {3/22:28} B:0 2.00004 [ 2.40002] ((4 . 17) (5 . 18) (6 . 19) (8 . 24) (9 . 25)) 3.033 {0/4:10} B:0 2.50021 [ 3.00012] ((7 . 18) (8 . 19) (9 . 20) (10 . 21)) 5.389 {0/6:6} B:0 2.50028 [ 3.00016] ((4 . 17) (5 . 18) (6 . 19) (10 . 24)) 5.807 {0/3:6} B:0 2.50082 [ 3.00047] ((3 . 20) (4 . 21) (6 . 24) (7 . 25)) 7.604 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6990 [and 1/min{score2}: 0.5852] [4503, 799]: Comparing 1o5u_A and 1dcs, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 24 (9 H + 15 S) secondary structure elements in 1dcs, of which 23 satisfy the size requirements. 1.41228 [ 2.59155] ((1 . 4) (2 . 5) (4 . 12) (5 . 13) (6 . 14) (7 . 15) (8 . 16) (9 . 18) (10 . 19)) 5.355 {3/24:36} B:0 1.42952 [ 2.36265] ((1 . 4) (2 . 5) (3 . 11) (4 . 12) (5 . 13) (6 . 14) (7 . 15) (8 . 16) (9 . 18) (10 . 19)) 5.651 {4/30:45} B:0 2.50667 [ 5.75055] ((2 . 17) (5 . 18) (6 . 19) (8 . 20)) 12.870 {0/2:6} B:0 2.72407 [ 4.69721] ((3 . 12) (4 . 13) (8 . 15) (9 . 16) (10 . 18)) 3.432 {2/8:10} B:0 2.72436 [ 5.77096] ((1 . 13) (3 . 15) (4 . 16) (8 . 19)) 6.394 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.7081 [and 1/min{score2}: 0.4233] [4503, 836]: Comparing 1o5u_A and 1dgw_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 18 (5 H + 13 S) secondary structure elements in 1dgw_A, of which 15 satisfy the size requirements. 1.54456 [ 2.18063] ((4 . 7) (5 . 8) (6 . 9) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 3.531 {1/9:21} B:0 2.50019 [ 3.75005] ((3 . 7) (4 . 8) (5 . 9) (6 . 10)) 5.247 {0/3:6} B:0 2.50019 [ 3.75006] ((5 . 4) (8 . 6) (9 . 7) (10 . 8)) 5.264 {0/2:6} B:0 2.50033 [ 3.75010] ((5 . 3) (6 . 4) (9 . 6) (10 . 7)) 6.052 {0/2:6} B:0 2.50054 [ 3.75016] ((3 . 9) (4 . 10) (5 . 11) (6 . 12)) 6.858 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.7000 [and 1/min{score2}: 0.4667] [4503, 930]: Comparing 1o5u_A and 1ds1_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 29 (13 H + 16 S) secondary structure elements in 1ds1_A, of which 22 satisfy the size requirements. 3.57079 [ 5.67688] ((2 . 16) (8 . 24) (9 . 25) (10 . 26)) 7.812 {2/6:6} B:0 5.07684 [ 6.26473] ((1 . 11) (5 . 13) (6 . 14) (9 . 17)) 11.331 {1/2:6} B:0 6.04481 [ 6.85732] ((2 . 5) (3 . 6) (7 . 9) (9 . 11)) 8.704 {3/5:6} B:0 6.04517 [ 6.85757] ((3 . 24) (5 . 26) (7 . 27) (10 . 29)) 12.748 {3/5:6} B:0 10.00976 [10.22132] ((4 . 11) (5 . 12) (7 . 13) (8 . 14)) 6.574 {3/3:6} B:0 SIMILARITY (1/min{score1}): 0.2801 [and 1/min{score2}: 0.2200] [4503, 1045]: Comparing 1o5u_A and 1e5s_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 19 (7 H + 12 S) secondary structure elements in 1e5s_A, of which 16 satisfy the size requirements. 1.74366 [ 2.05137] ((1 . 1) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 3.912 {3/18:36} B:0 2.00030 [ 3.20007] ((4 . 7) (5 . 8) (7 . 10) (8 . 11) (9 . 12)) 5.010 {0/3:10} B:0 2.50006 [ 4.00001] ((7 . 5) (8 . 6) (9 . 7) (10 . 8)) 3.979 {0/3:6} B:0 2.50025 [ 4.00006] ((5 . 7) (6 . 8) (7 . 10) (9 . 11)) 5.683 {0/2:6} B:0 2.50063 [ 4.00015] ((1 . 5) (3 . 6) (6 . 8) (9 . 11)) 7.123 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7759 [and 1/min{score2}: 0.5463] [4503, 1230]: Comparing 1o5u_A and 1ep0_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 17 (4 H + 13 S) secondary structure elements in 1ep0_A, of which 15 satisfy the size requirements. 1.12262 [ 1.67012] ((1 . 2) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 3.230 {1/20:36} B:0 2.50012 [ 3.75004] ((7 . 11) (8 . 12) (9 . 13) (10 . 15)) 4.746 {0/5:6} B:0 2.50088 [ 3.75026] ((2 . 5) (6 . 6) (7 . 7) (9 . 9)) 7.741 {0/5:6} B:0 2.50137 [ 3.75041] ((4 . 2) (8 . 6) (9 . 7) (10 . 8)) 8.663 {0/2:6} B:0 2.51002 [ 3.75298] ((1 . 1) (4 . 3) (9 . 7) (10 . 8)) 14.255 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.8908 [and 1/min{score2}: 0.5988] [4503, 1312]: Comparing 1o5u_A and 1eyb_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 40 (10 H + 30 S) secondary structure elements in 1eyb_A, of which 29 satisfy the size requirements. 2.00047 [ 5.80002] ((3 . 13) (4 . 14) (5 . 15) (6 . 16) (9 . 19)) 5.615 {0/6:10} B:0 2.50054 [ 7.25002] ((1 . 15) (3 . 17) (5 . 19) (9 . 23)) 6.855 {0/4:6} B:0 2.50514 [ 7.25021] ((1 . 19) (5 . 23) (8 . 26) (10 . 28)) 12.056 {0/4:6} B:0 2.61702 [ 7.25514] ((1 . 31) (3 . 33) (5 . 34) (10 . 37)) 9.563 {1/6:6} B:0 2.72588 [ 7.26057] ((3 . 31) (5 . 33) (9 . 35) (10 . 37)) 9.929 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.8886 [and 1/min{score2}: 0.3103] [4503, 1505]: Comparing 1o5u_A and 1fi2_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1fi2_A, of which 14 satisfy the size requirements. 1.27474 [ 1.75921] ((3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 3.171 {1/15:28} B:0 1.85662 [ 2.41132] ((5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 2.982 {1/7:15} B:0 2.20723 [ 2.88421] ((5 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 5.924 {1/6:10} B:0 2.20742 [ 2.88430] ((4 . 6) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 6.505 {1/6:10} B:0 2.50007 [ 3.50003] ((4 . 4) (5 . 5) (6 . 6) (7 . 7)) 4.166 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7845 [and 1/min{score2}: 0.5684] [4503, 1624]: Comparing 1o5u_A and 1ft9_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 18 (7 H + 11 S) secondary structure elements in 1ft9_A, of which 11 satisfy the size requirements. 1.47164 [ 1.52424] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9)) 4.393 {4/30:36} B:0 1.74355 [ 1.89231] ((4 . 2) (5 . 3) (6 . 4) (7 . 7) (8 . 8) (9 . 9)) 2.957 {1/9:15} B:0 1.91234 [ 1.95162] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9)) 4.136 {4/22:28} B:0 2.00033 [ 2.20025] ((3 . 3) (5 . 5) (7 . 7) (8 . 8) (9 . 9)) 5.121 {0/7:10} B:0 2.50017 [ 2.75013] ((1 . 3) (4 . 6) (5 . 7) (6 . 8)) 5.116 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7340 [and 1/min{score2}: 0.6836] [4503, 1894]: Comparing 1o5u_A and 1gp6_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 30 (16 H + 14 S) secondary structure elements in 1gp6_A, of which 22 satisfy the size requirements. 1.39521 [ 2.26275] ((1 . 7) (2 . 8) (3 . 18) (4 . 19) (5 . 20) (6 . 21) (7 . 22) (8 . 23) (9 . 25) (10 . 26)) 5.799 {4/31:45} B:0 2.50031 [ 5.50003] ((1 . 19) (3 . 20) (8 . 25) (10 . 26)) 5.950 {0/3:6} B:0 2.50049 [ 5.50005] ((1 . 20) (3 . 22) (4 . 23) (8 . 26)) 6.689 {0/3:6} B:0 2.50063 [ 5.50006] ((2 . 15) (7 . 19) (8 . 20) (9 . 21)) 7.130 {0/3:6} B:0 2.72456 [ 5.52395] ((1 . 12) (2 . 15) (9 . 19) (10 . 20)) 7.247 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.7167 [and 1/min{score2}: 0.4419] [4503, 1946]: Comparing 1o5u_A and 1gtf_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 7 (0 H + 7 S) secondary structure elements in 1gtf_A, of which 7 satisfy the size requirements. 2.50020 [ 1.75058] ((7 . 4) (8 . 5) (9 . 6) (10 . 7)) 5.338 {0/4:6} B:0 2.50128 [ 1.75374] ((3 . 1) (4 . 2) (5 . 3) (8 . 5)) 8.519 {0/1:6} B:0 3.57050 [ 3.39494] ((4 . 3) (5 . 4) (6 . 5) (7 . 6)) 3.962 {1/3:6} B:0 1.48394 [ 1.13920] ((3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (9 . 1) (10 . 2)) 2.969 {1/11:21} B:1 1.97108 [ 1.85847] ((3 . 7) (5 . 1) (6 . 2) (7 . 3) (8 . 4) (9 . 5) (10 . 6)) 3.025 {2/11:21} B:1 SIMILARITY (1/min{score1}): 0.6739 [and 1/min{score2}: 0.8778] [4503, 2049]: Comparing 1o5u_A and 1h2k_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 29 (12 H + 17 S) secondary structure elements in 1h2k_A, of which 25 satisfy the size requirements. 1.74357 [ 2.86373] ((1 . 7) (3 . 18) (4 . 19) (5 . 20) (6 . 21) (7 . 24) (8 . 25) (9 . 26) (10 . 27)) 3.226 {3/18:36} B:0 2.50005 [ 6.25000] ((7 . 18) (8 . 19) (9 . 20) (10 . 21)) 3.716 {0/3:6} B:0 2.50020 [ 6.25001] ((3 . 21) (8 . 24) (9 . 25) (10 . 26)) 5.372 {0/1:6} B:0 2.50028 [ 6.25002] ((3 . 19) (4 . 20) (5 . 21) (10 . 24)) 5.822 {0/1:6} B:0 2.50083 [ 6.25005] ((2 . 8) (5 . 10) (8 . 12) (10 . 14)) 7.646 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8068 [and 1/min{score2}: 0.3587] [4503, 2409]: Comparing 1o5u_A and 1i5z_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 17 (6 H + 11 S) secondary structure elements in 1i5z_A, of which 10 satisfy the size requirements. 2.11939 [ 2.11939] ((3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8)) 5.236 {1/7:10} B:0 2.20717 [ 2.20717] ((2 . 1) (3 . 4) (4 . 5) (9 . 8) (10 . 9)) 5.724 {1/6:10} B:0 2.32314 [ 2.32314] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 9)) 4.417 {5/22:28} B:0 2.50022 [ 2.50022] ((4 . 2) (5 . 3) (6 . 4) (10 . 8)) 5.460 {0/3:6} B:0 2.72425 [ 2.72425] ((7 . 3) (8 . 4) (9 . 5) (10 . 6)) 5.770 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6918 [and 1/min{score2}: 0.6918] [4503, 2477]: Comparing 1o5u_A and 1ig0_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 29 (13 H + 16 S) secondary structure elements in 1ig0_A, of which 10 satisfy the size requirements. 1.30779 [ 1.30779] ((3 . 20) (4 . 21) (5 . 23) (6 . 24) (7 . 25) (8 . 26) (9 . 27) (10 . 28)) 3.177 {1/12:28} B:0 2.50284 [ 2.50284] ((1 . 24) (3 . 26) (4 . 27) (5 . 28)) 10.386 {0/2:6} B:0 3.57052 [ 3.57052] ((1 . 21) (2 . 22) (6 . 25) (8 . 27)) 4.619 {1/3:6} B:0 2.00018 [ 2.00018] ((3 . 21) (4 . 20) (8 . 25) (9 . 26) (10 . 27)) 4.395 {0/3:10} B:1 2.97507 [ 2.97507] ((2 . 22) (6 . 25) (9 . 28) (10 . 27)) 10.904 {1/4:6} B:1 SIMILARITY (1/min{score1}): 0.7646 [and 1/min{score2}: 0.7646] [4503, 2479]: Comparing 1o5u_A and 1ig3_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 22 (7 H + 15 S) secondary structure elements in 1ig3_A, of which 8 satisfy the size requirements. 1.30797 [ 1.10398] ((3 . 15) (4 . 16) (5 . 17) (6 . 18) (7 . 19) (8 . 20) (9 . 21) (10 . 22)) 3.790 {1/12:28} B:0 1.66676 [ 1.33351] ((3 . 16) (4 . 17) (5 . 18) (8 . 19) (9 . 20) (10 . 21)) 3.227 {0/5:15} B:0 1.98243 [ 1.81658] ((3 . 16) (4 . 17) (6 . 18) (8 . 19) (9 . 20) (10 . 21)) 5.417 {1/6:15} B:0 2.50019 [ 2.00036] ((4 . 15) (5 . 16) (6 . 17) (9 . 20)) 5.260 {0/1:6} B:0 2.50069 [ 2.00134] ((4 . 16) (5 . 17) (6 . 18) (10 . 21)) 7.282 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.7645 [and 1/min{score2}: 0.9058] [4503, 2699]: Comparing 1o5u_A and 1j1l_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 30 (4 H + 26 S) secondary structure elements in 1j1l_A, of which 25 satisfy the size requirements. 1.26072 [ 2.78939] ((1 . 1) (3 . 19) (4 . 20) (5 . 21) (6 . 22) (7 . 23) (8 . 24) (9 . 25) (10 . 26)) 3.433 {2/20:36} B:0 2.00045 [ 5.00003] ((4 . 4) (5 . 5) (6 . 6) (8 . 8) (10 . 10)) 5.558 {0/5:10} B:0 2.00046 [ 5.00003] ((1 . 5) (4 . 8) (5 . 9) (6 . 10) (10 . 13)) 5.571 {0/4:10} B:0 2.00069 [ 5.00004] ((5 . 5) (6 . 6) (8 . 8) (9 . 9) (10 . 10)) 6.175 {0/4:10} B:0 2.50032 [ 6.25002] ((3 . 20) (4 . 21) (6 . 23) (9 . 26)) 6.024 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8998 [and 1/min{score2}: 0.3600] [4503, 2735]: Comparing 1o5u_A and 1j58_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 39 (12 H + 27 S) secondary structure elements in 1j58_A, of which 28 satisfy the size requirements. 1.85662 [ 4.67688] ((3 . 28) (4 . 29) (5 . 30) (8 . 33) (9 . 34) (10 . 35)) 2.871 {1/7:15} B:0 2.20712 [ 5.61097] ((5 . 12) (7 . 14) (8 . 15) (9 . 16) (10 . 18)) 5.520 {1/6:10} B:0 2.20753 [ 5.61100] ((4 . 28) (6 . 30) (8 . 32) (9 . 33) (10 . 34)) 6.772 {1/6:10} B:0 2.50002 [ 7.00000] ((7 . 9) (8 . 10) (9 . 11) (10 . 12)) 2.813 {0/3:6} B:0 2.50013 [ 7.00001] ((4 . 30) (5 . 31) (7 . 33) (9 . 35)) 4.823 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.8936 [and 1/min{score2}: 0.3214] [4503, 3004]: Comparing 1o5u_A and 1jop_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 15 (4 H + 11 S) secondary structure elements in 1jop_A, of which 12 satisfy the size requirements. 1.00685 [ 1.20399] ((1 . 1) (2 . 2) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 11) (8 . 12) (9 . 13) (10 . 14)) 4.416 {1/26:45} B:0 1.12294 [ 1.34023] ((1 . 1) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 11) (8 . 12) (9 . 13) (10 . 14)) 3.876 {1/20:36} B:0 2.50027 [ 3.00016] ((7 . 4) (8 . 5) (9 . 6) (10 . 7)) 5.788 {0/3:6} B:0 2.50038 [ 3.00022] ((2 . 2) (4 . 6) (6 . 8) (9 . 10)) 6.302 {0/4:6} B:0 2.50041 [ 3.00024] ((6 . 4) (7 . 5) (9 . 7) (10 . 8)) 6.410 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.9932 [and 1/min{score2}: 0.8306] [4503, 3032]: Comparing 1o5u_A and 1jr7_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 26 (9 H + 17 S) secondary structure elements in 1jr7_A, of which 23 satisfy the size requirements. 2.50003 [ 5.75000] ((7 . 23) (8 . 24) (9 . 25) (10 . 26)) 3.410 {0/5:6} B:0 2.50012 [ 5.75001] ((2 . 22) (3 . 23) (5 . 25) (6 . 26)) 4.697 {0/5:6} B:0 2.50040 [ 5.75003] ((1 . 20) (2 . 22) (6 . 24) (7 . 25)) 6.346 {0/4:6} B:0 2.50151 [ 5.75012] ((1 . 17) (3 . 19) (4 . 20) (10 . 25)) 8.876 {0/5:6} B:0 2.72410 [ 5.77093] ((2 . 22) (3 . 23) (4 . 24) (5 . 25)) 4.177 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.8191 [and 1/min{score2}: 0.3897] [4503, 3066]: Comparing 1o5u_A and 1juh_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 30 (5 H + 25 S) secondary structure elements in 1juh_A, of which 26 satisfy the size requirements. 1.71832 [ 4.33641] ((3 . 5) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11)) 3.345 {1/10:15} B:0 1.98208 [ 4.35685] ((5 . 23) (6 . 24) (7 . 25) (8 . 26) (9 . 27) (10 . 28)) 3.492 {1/6:15} B:0 2.00015 [ 5.20001] ((3 . 22) (5 . 23) (6 . 24) (9 . 27) (10 . 28)) 4.235 {0/4:10} B:0 2.50045 [ 6.50003] ((1 . 1) (3 . 2) (4 . 3) (9 . 7)) 6.536 {0/4:6} B:0 2.50058 [ 6.50003] ((4 . 7) (5 . 8) (6 . 9) (7 . 10)) 6.978 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5820 [and 1/min{score2}: 0.2854] [4503, 3708]: Comparing 1o5u_A and 1lrh_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 16 (4 H + 12 S) secondary structure elements in 1lrh_A, of which 13 satisfy the size requirements. 1.66683 [ 2.16674] ((4 . 6) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 3.743 {0/8:15} B:0 2.50005 [ 3.25002] ((7 . 10) (8 . 11) (9 . 12) (10 . 13)) 3.869 {0/4:6} B:0 2.50179 [ 3.25081] ((1 . 3) (4 . 6) (6 . 8) (10 . 11)) 9.250 {0/2:6} B:0 2.72415 [ 3.36079] ((3 . 6) (4 . 7) (5 . 8) (6 . 9)) 4.876 {1/5:6} B:0 2.72429 [ 3.36086] ((7 . 6) (8 . 7) (9 . 8) (10 . 9)) 5.985 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6497 [and 1/min{score2}: 0.5603] [4503, 3833]: Comparing 1o5u_A and 1m4o_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 12 (5 H + 7 S) secondary structure elements in 1m4o_A, of which 12 satisfy the size requirements. 2.50005 [ 3.00003] ((1 . 6) (2 . 7) (5 . 8) (8 . 11)) 3.873 {0/4:6} B:0 2.50048 [ 3.00028] ((1 . 6) (2 . 7) (5 . 8) (10 . 11)) 6.649 {0/4:6} B:0 2.50087 [ 3.00050] ((2 . 4) (8 . 8) (9 . 9) (10 . 10)) 7.729 {0/5:6} B:0 2.50160 [ 3.00093] ((1 . 6) (2 . 7) (5 . 8) (6 . 9)) 9.001 {0/4:6} B:0 2.50163 [ 3.00095] ((1 . 6) (2 . 7) (4 . 9) (5 . 10)) 9.047 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.3333] [4503, 4207]: Comparing 1o5u_A and 1ne6_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 27 (11 H + 16 S) secondary structure elements in 1ne6_A, of which 13 satisfy the size requirements. 1.91245 [ 2.05714] ((2 . 16) (3 . 17) (4 . 18) (5 . 19) (6 . 20) (7 . 21) (9 . 24) (10 . 25)) 4.682 {4/22:28} B:0 2.50023 [ 3.25011] ((2 . 14) (7 . 18) (8 . 19) (9 . 20)) 5.560 {0/6:6} B:0 2.61612 [ 3.30523] ((2 . 14) (6 . 17) (8 . 19) (9 . 20)) 8.017 {1/6:6} B:0 2.97315 [ 3.50338] ((4 . 17) (5 . 18) (6 . 19) (10 . 24)) 5.526 {1/4:6} B:0 4.14461 [ 4.37862] ((3 . 18) (4 . 19) (5 . 20) (6 . 21)) 5.373 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.6236 [and 1/min{score2}: 0.5139] [4503, 4421]: Comparing 1o5u_A and 1nx4_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 22 (6 H + 16 S) secondary structure elements in 1nx4_A, of which 19 satisfy the size requirements. 2.50008 [ 4.75001] ((2 . 18) (4 . 20) (5 . 21) (6 . 22)) 4.239 {0/4:6} B:0 2.50039 [ 4.75006] ((1 . 16) (2 . 18) (5 . 19) (6 . 20)) 6.336 {0/5:6} B:0 2.50082 [ 4.75012] ((4 . 13) (6 . 15) (7 . 16) (9 . 17)) 7.620 {0/4:6} B:0 2.50173 [ 4.75025] ((3 . 17) (8 . 20) (9 . 21) (10 . 22)) 9.179 {0/5:6} B:0 2.50343 [ 4.75050] ((5 . 13) (6 . 15) (7 . 16) (9 . 17)) 10.894 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4995 [and 1/min{score2}: 0.4084] [4503, 4429]: Comparing 1o5u_A and 1nxm_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 19 (6 H + 13 S) secondary structure elements in 1nxm_A, of which 16 satisfy the size requirements. 1.28811 [ 1.83010] ((1 . 2) (3 . 7) (4 . 8) (5 . 9) (6 . 10) (7 . 11) (8 . 12) (9 . 13) (10 . 14)) 2.952 {2/19:36} B:0 1.66768 [ 2.66692] ((2 . 6) (6 . 10) (7 . 11) (8 . 12) (9 . 13) (10 . 14)) 5.929 {0/10:15} B:0 2.20715 [ 3.25742] ((2 . 6) (4 . 8) (5 . 9) (6 . 10) (7 . 11)) 5.664 {1/6:10} B:0 2.50073 [ 4.00018] ((1 . 10) (4 . 12) (5 . 13) (6 . 14)) 7.392 {0/1:6} B:0 2.50177 [ 4.00043] ((4 . 10) (7 . 12) (8 . 13) (9 . 14)) 9.230 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.9978 [and 1/min{score2}: 0.6248] [4503, 4484]: Comparing 1o5u_A and 1o4t_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 13 (2 H + 11 S) secondary structure elements in 1o4t_A, of which 11 satisfy the size requirements. 1.98207 [ 2.08821] ((5 . 8) (6 . 9) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 3.302 {1/6:15} B:0 2.00050 [ 2.20038] ((4 . 8) (5 . 9) (7 . 11) (8 . 12) (9 . 13)) 5.696 {0/2:10} B:0 2.00094 [ 2.20071] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (9 . 11)) 6.664 {0/5:10} B:0 2.11911 [ 2.29189] ((4 . 7) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 2.648 {1/7:10} B:0 2.50027 [ 2.75020] ((7 . 7) (8 . 8) (9 . 9) (10 . 10)) 5.749 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5735 [and 1/min{score2}: 0.5403] [4503, 4501]: Comparing 1o5u_A and 1o5l_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 12 (4 H + 8 S) secondary structure elements in 1o5l_A, of which 11 satisfy the size requirements. 1.91240 [ 1.95167] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (9 . 9) (10 . 10)) 4.445 {4/22:28} B:0 2.11939 [ 2.29211] ((3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 9)) 5.234 {1/7:10} B:0 2.72427 [ 2.92511] ((7 . 3) (8 . 4) (9 . 5) (10 . 6)) 5.869 {1/5:6} B:0 2.72436 [ 2.92519] ((2 . 1) (3 . 4) (4 . 5) (9 . 9)) 6.415 {1/5:6} B:0 2.72450 [ 2.92530] ((2 . 1) (5 . 2) (6 . 3) (7 . 4)) 7.025 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6918 [and 1/min{score2}: 0.6312] [4503, 4503]: Comparing 1o5u_A and 1o5u_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10)) 0.000 {0/37:45} B:0 2.97313 [ 2.97313] ((7 . 4) (8 . 5) (9 . 6) (10 . 7)) 5.315 {1/4:6} B:0 2.97313 [ 2.97313] ((4 . 7) (5 . 8) (6 . 9) (7 . 10)) 5.315 {1/4:6} B:0 3.17710 [ 3.17710] ((3 . 7) (4 . 8) (5 . 9) (6 . 10) (7 . 3) (8 . 4) (9 . 5) (10 . 6)) 2.455 {6/19:28} B:1 1.53900 [ 1.53900] ((1 . 10) (4 . 7) (5 . 8) (6 . 9) (7 . 4) (8 . 5) (9 . 6) (10 . 1)) 4.774 {2/15:28} B:3 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [4503, 4536]: Comparing 1o5u_A and 1o7f_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 39 (19 H + 20 S) secondary structure elements in 1o7f_A, of which 13 satisfy the size requirements. 1.60350 [ 1.82703] ((2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 9) (9 . 12) (10 . 13)) 4.195 {3/21:28} B:0 2.00137 [ 2.60063] ((2 . 2) (7 . 5) (8 . 6) (9 . 7) (10 . 9)) 7.328 {0/10:10} B:0 2.97311 [ 3.50335] ((4 . 4) (5 . 5) (6 . 6) (7 . 7)) 5.000 {1/4:6} B:0 2.97380 [ 3.50378] ((1 . 7) (3 . 9) (5 . 12) (6 . 13)) 8.578 {1/4:6} B:0 4.33568 [ 4.42403] ((2 . 3) (3 . 6) (4 . 7) (9 . 12) (10 . 13)) 4.969 {3/7:10} B:0 SIMILARITY (1/min{score1}): 0.6236 [and 1/min{score2}: 0.5473] [4503, 4538]: Comparing 1o5u_A and 1o7f_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 39 (19 H + 20 S) secondary structure elements in 1o7f_A, of which 11 satisfy the size requirements. 1.32989 [ 1.43674] ((2 . 29) (3 . 30) (4 . 31) (5 . 32) (6 . 33) (7 . 34) (9 . 37) (10 . 38)) 3.901 {2/22:28} B:0 1.64526 [ 1.74444] ((3 . 30) (4 . 31) (5 . 32) (6 . 33) (7 . 34) (9 . 37) (10 . 38)) 3.301 {2/15:21} B:0 2.00120 [ 2.20090] ((2 . 27) (7 . 31) (8 . 32) (9 . 33) (10 . 34)) 7.080 {0/9:10} B:0 2.72502 [ 2.92572] ((2 . 29) (3 . 32) (4 . 33) (5 . 34)) 8.486 {1/5:6} B:0 2.97307 [ 3.13228] ((4 . 30) (5 . 31) (6 . 32) (7 . 33)) 4.437 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.7519 [and 1/min{score2}: 0.6960] [4503, 4600]: Comparing 1o5u_A and 1od5_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 36 (9 H + 27 S) secondary structure elements in 1od5_A, of which 16 satisfy the size requirements. 1.60328 [ 2.11912] ((3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 2.941 {2/14:28} B:0 1.66675 [ 2.66669] ((3 . 5) (4 . 6) (5 . 7) (8 . 10) (9 . 11) (10 . 12)) 3.153 {0/5:15} B:0 2.00004 [ 3.20001] ((4 . 6) (5 . 7) (8 . 10) (9 . 11) (10 . 12)) 2.998 {0/3:10} B:0 2.00014 [ 3.20003] ((3 . 6) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 4.161 {0/6:10} B:0 2.00015 [ 3.20004] ((4 . 7) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 4.181 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.9909 [and 1/min{score2}: 0.6241] [4503, 4601]: Comparing 1o5u_A and 1od5_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 36 (9 H + 27 S) secondary structure elements in 1od5_A, of which 16 satisfy the size requirements. 1.66669 [ 2.66667] ((5 . 26) (6 . 27) (7 . 28) (8 . 29) (9 . 30) (10 . 31)) 2.186 {0/7:15} B:0 2.00000 [ 3.20000] ((4 . 25) (5 . 26) (6 . 27) (7 . 28) (8 . 29)) 1.443 {0/4:10} B:0 2.11945 [ 3.23142] ((5 . 27) (7 . 29) (8 . 30) (9 . 31) (10 . 32)) 5.483 {1/7:10} B:0 2.50008 [ 4.00002] ((3 . 25) (4 . 26) (5 . 27) (7 . 29)) 4.275 {0/2:6} B:0 2.50061 [ 4.00015] ((4 . 22) (8 . 25) (9 . 26) (10 . 27)) 7.069 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.7791 [and 1/min{score2}: 0.5077] [4503, 4606]: Comparing 1o5u_A and 1odm_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 23 (10 H + 13 S) secondary structure elements in 1odm_A, of which 20 satisfy the size requirements. 1.04520 [ 2.00602] ((1 . 4) (2 . 5) (3 . 12) (4 . 15) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (9 . 21) (10 . 22)) 6.030 {2/31:45} B:0 1.19273 [ 2.23352] ((1 . 4) (2 . 5) (4 . 15) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (9 . 21) (10 . 22)) 5.811 {2/24:36} B:0 2.37858 [ 4.06112] ((3 . 15) (4 . 16) (5 . 17) (7 . 19) (10 . 21)) 4.938 {1/5:10} B:0 2.50054 [ 5.00007] ((1 . 16) (3 . 18) (4 . 19) (8 . 22)) 6.850 {0/3:6} B:0 2.50060 [ 5.00007] ((7 . 15) (8 . 16) (9 . 17) (10 . 18)) 7.028 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.9568 [and 1/min{score2}: 0.4985] [4503, 4631]: Comparing 1o5u_A and 1ofn_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 18 (5 H + 13 S) secondary structure elements in 1ofn_A, of which 17 satisfy the size requirements. 1.12505 [ 1.89177] ((1 . 2) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 2.971 {1/19:36} B:0 2.50007 [ 4.25001] ((7 . 11) (8 . 12) (9 . 13) (10 . 15)) 4.151 {0/4:6} B:0 2.50071 [ 4.25015] ((1 . 9) (4 . 11) (5 . 12) (6 . 13)) 7.351 {0/1:6} B:0 2.50099 [ 4.25020] ((4 . 2) (8 . 6) (9 . 7) (10 . 8)) 7.977 {0/2:6} B:0 2.50187 [ 4.25038] ((1 . 4) (2 . 5) (4 . 6) (10 . 10)) 9.359 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.8889 [and 1/min{score2}: 0.5286] [4503, 4671]: Comparing 1o5u_A and 1oih_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 22 (6 H + 16 S) secondary structure elements in 1oih_A, of which 21 satisfy the size requirements. 1.27491 [ 2.62777] ((1 . 4) (3 . 6) (5 . 7) (6 . 8) (7 . 18) (8 . 19) (9 . 20) (10 . 21)) 3.735 {1/15:28} B:0 1.83055 [ 2.50453] ((1 . 4) (2 . 5) (3 . 6) (5 . 7) (6 . 8) (7 . 18) (8 . 19) (9 . 20) (10 . 21)) 4.503 {3/17:36} B:0 2.50002 [ 5.25000] ((7 . 18) (8 . 19) (9 . 20) (10 . 21)) 3.155 {0/4:6} B:0 2.50020 [ 5.25002] ((2 . 16) (4 . 19) (5 . 20) (6 . 21)) 5.366 {0/4:6} B:0 2.61615 [ 5.26339] ((2 . 10) (3 . 11) (5 . 13) (6 . 14)) 8.071 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.7844 [and 1/min{score2}: 0.3993] [4503, 4713]: Comparing 1o5u_A and 1omi_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 21 (9 H + 12 S) secondary structure elements in 1omi_A, of which 10 satisfy the size requirements. 1.71558 [ 1.71558] ((2 . 1) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9)) 4.378 {3/19:28} B:0 2.50043 [ 2.50043] ((2 . 1) (3 . 4) (4 . 5) (9 . 8)) 6.496 {0/4:6} B:0 2.97304 [ 2.97304] ((3 . 3) (4 . 4) (5 . 5) (10 . 8)) 3.520 {1/4:6} B:0 2.97311 [ 2.97311] ((3 . 3) (4 . 4) (5 . 5) (6 . 6)) 4.961 {1/4:6} B:0 2.97330 [ 2.97330] ((5 . 3) (6 . 4) (8 . 6) (10 . 8)) 6.623 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.7332 [and 1/min{score2}: 0.7332] [4503, 4782]: Comparing 1o5u_A and 1otj_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 25 (9 H + 16 S) secondary structure elements in 1otj_A, of which 21 satisfy the size requirements. 1.25040 [ 2.62504] ((1 . 4) (3 . 7) (5 . 8) (6 . 9) (7 . 22) (8 . 23) (9 . 24) (10 . 25)) 3.787 {0/13:28} B:0 1.47174 [ 2.39332] ((1 . 4) (2 . 5) (3 . 7) (5 . 8) (6 . 9) (7 . 22) (8 . 23) (9 . 24) (10 . 25)) 4.634 {2/15:36} B:0 2.50021 [ 5.25002] ((2 . 20) (4 . 23) (5 . 24) (6 . 25)) 5.414 {0/4:6} B:0 2.50025 [ 5.25003] ((1 . 12) (6 . 17) (7 . 18) (8 . 19)) 5.648 {0/3:6} B:0 2.50040 [ 5.25004] ((1 . 9) (2 . 11) (3 . 12) (10 . 19)) 6.348 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7997 [and 1/min{score2}: 0.4178] [4503, 5002]: Comparing 1o5u_A and 1pg6_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 23 (4 H + 19 S) secondary structure elements in 1pg6_A, of which 22 satisfy the size requirements. 1.66672 [ 3.66667] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (9 . 7) (10 . 8)) 2.877 {0/6:15} B:0 1.66800 [ 3.66679] ((2 . 6) (4 . 9) (5 . 10) (6 . 11) (8 . 13) (9 . 14)) 6.342 {0/8:15} B:0 2.00010 [ 4.40001] ((1 . 13) (3 . 15) (4 . 16) (5 . 18) (6 . 19)) 3.826 {0/6:10} B:0 2.00040 [ 4.40004] ((3 . 12) (5 . 14) (7 . 16) (8 . 18) (9 . 19)) 5.385 {0/6:10} B:0 2.00059 [ 4.40006] ((1 . 10) (3 . 12) (7 . 16) (8 . 18) (9 . 19)) 5.928 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.8858 [and 1/min{score2}: 0.4088] [4503, 5054]: Comparing 1o5u_A and 1pmi, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 43 (17 H + 26 S) secondary structure elements in 1pmi, of which 35 satisfy the size requirements. 1.12265 [ 3.88916] ((1 . 1) (3 . 35) (4 . 36) (5 . 37) (6 . 38) (7 . 40) (8 . 41) (9 . 42) (10 . 43)) 3.307 {1/20:36} B:0 2.50008 [ 8.75000] ((7 . 27) (8 . 28) (9 . 29) (10 . 30)) 4.290 {0/5:6} B:0 2.50017 [ 8.75000] ((6 . 33) (8 . 35) (9 . 36) (10 . 37)) 5.122 {0/2:6} B:0 2.50020 [ 8.75000] ((1 . 36) (4 . 40) (5 . 41) (6 . 42)) 5.328 {0/3:6} B:0 2.50034 [ 8.75001] ((7 . 36) (8 . 37) (9 . 38) (10 . 40)) 6.099 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8907 [and 1/min{score2}: 0.2571] [4503, 5193]: Comparing 1o5u_A and 1q3e_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 17 (9 H + 8 S) secondary structure elements in 1q3e_A, of which 16 satisfy the size requirements. 1.91230 [ 2.27806] ((2 . 6) (3 . 7) (4 . 8) (5 . 9) (6 . 10) (7 . 11) (9 . 14) (10 . 15)) 3.787 {4/22:28} B:0 2.00098 [ 3.20024] ((2 . 4) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 6.731 {0/10:10} B:0 2.72421 [ 4.06114] ((2 . 3) (8 . 7) (9 . 8) (10 . 9)) 5.456 {1/5:6} B:0 2.72442 [ 4.06120] ((1 . 9) (3 . 11) (5 . 14) (6 . 15)) 6.685 {1/5:6} B:0 2.72486 [ 4.06133] ((2 . 6) (3 . 9) (4 . 10) (5 . 11)) 8.108 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6368 [and 1/min{score2}: 0.4390] [4503, 5480]: Comparing 1o5u_A and 1qwr_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 31 (7 H + 24 S) secondary structure elements in 1qwr_A, of which 28 satisfy the size requirements. 1.20339 [ 3.11586] ((1 . 1) (3 . 24) (4 . 25) (5 . 26) (6 . 27) (7 . 28) (8 . 29) (9 . 30) (10 . 31)) 3.005 {2/23:36} B:0 1.44487 [ 3.51112] ((3 . 24) (4 . 25) (5 . 26) (6 . 27) (7 . 28) (8 . 29) (9 . 30) (10 . 31)) 2.999 {2/17:28} B:0 1.85809 [ 4.67697] ((1 . 10) (4 . 12) (5 . 13) (8 . 16) (9 . 17) (10 . 18)) 7.096 {1/7:15} B:0 2.37978 [ 5.62274] ((2 . 11) (7 . 17) (8 . 18) (9 . 19) (10 . 20)) 8.331 {2/10:10} B:0 2.50018 [ 7.00001] ((6 . 23) (7 . 24) (9 . 26) (10 . 27)) 5.225 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.8310 [and 1/min{score2}: 0.3209] [4503, 5489]: Comparing 1o5u_A and 1qxr_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 17 (3 H + 14 S) secondary structure elements in 1qxr_A, of which 14 satisfy the size requirements. 2.00032 [ 2.80012] ((2 . 4) (3 . 5) (4 . 9) (9 . 12) (10 . 13)) 5.089 {0/7:10} B:0 2.50027 [ 3.50010] ((2 . 4) (3 . 5) (4 . 6) (9 . 12)) 5.746 {0/4:6} B:0 2.50100 [ 3.50037] ((3 . 6) (7 . 9) (9 . 11) (10 . 12)) 8.011 {0/4:6} B:0 2.50171 [ 3.50062] ((2 . 4) (3 . 5) (9 . 10) (10 . 11)) 9.151 {0/5:6} B:0 2.50204 [ 3.50075] ((3 . 9) (4 . 10) (8 . 13) (9 . 14)) 9.569 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.3571] [4503, 5604]: Comparing 1o5u_A and 1rc6_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 25 (4 H + 21 S) secondary structure elements in 1rc6_A, of which 21 satisfy the size requirements. 1.12070 [ 2.33438] ((1 . 3) (3 . 18) (4 . 19) (5 . 20) (6 . 21) (7 . 22) (8 . 23) (9 . 24) (10 . 25)) 3.328 {1/21:36} B:0 2.00046 [ 4.20005] ((4 . 20) (5 . 21) (7 . 23) (8 . 24) (9 . 25)) 5.581 {0/2:10} B:0 2.00075 [ 4.20008] ((3 . 5) (4 . 7) (5 . 8) (8 . 11) (9 . 12)) 6.307 {0/6:10} B:0 2.00752 [ 4.20082] ((3 . 5) (5 . 8) (8 . 9) (9 . 10) (10 . 11)) 11.222 {0/6:10} B:0 2.20719 [ 4.22586] ((3 . 5) (5 . 8) (6 . 9) (8 . 11) (9 . 12)) 5.813 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.8923 [and 1/min{score2}: 0.4284] [4503, 5840]: Comparing 1o5u_A and 1sq4_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 26 (4 H + 22 S) secondary structure elements in 1sq4_A, of which 19 satisfy the size requirements. 1.85664 [ 3.19897] ((5 . 21) (6 . 22) (7 . 23) (8 . 24) (9 . 25) (10 . 26)) 3.178 {1/7:15} B:0 2.00079 [ 3.80011] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (9 . 11)) 6.376 {0/4:10} B:0 2.00165 [ 3.80024] ((3 . 18) (4 . 19) (6 . 21) (7 . 22) (9 . 24)) 7.673 {0/6:10} B:0 2.00769 [ 3.80113] ((3 . 5) (5 . 7) (8 . 8) (9 . 9) (10 . 10)) 11.284 {0/6:10} B:0 2.50015 [ 4.75002] ((3 . 5) (5 . 7) (8 . 10) (9 . 11)) 4.983 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8860 [and 1/min{score2}: 0.4731] [4503, 5856]: Comparing 1o5u_A and 1su4_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 72 (42 H + 30 S) secondary structure elements in 1su4_A, of which 6 satisfy the size requirements. 2.50152 [ 1.50701] ((4 . 6) (7 . 9) (9 . 10) (10 . 11)) 8.891 {0/3:6} B:0 2.72458 [ 2.14339] ((3 . 6) (5 . 9) (6 . 10) (7 . 11)) 7.300 {1/5:6} B:0 2.97381 [ 2.57856] ((5 . 6) (7 . 9) (9 . 10) (10 . 11)) 8.605 {1/4:6} B:0 2.50011 [ 1.50051] ((4 . 10) (5 . 11) (9 . 16) (10 . 15)) 4.608 {0/1:6} B:1 2.50280 [ 1.51283] ((3 . 10) (4 . 11) (9 . 16) (10 . 15)) 10.354 {0/0:6} B:1 SIMILARITY (1/min{score1}): 0.5998 [and 1/min{score2}: 0.9977] [4503, 6277]: Comparing 1o5u_A and 1vj2_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 13 (2 H + 11 S) secondary structure elements in 1vj2_A, of which 11 satisfy the size requirements. 1.45784 [ 1.59363] ((3 . 5) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 3.327 {1/13:21} B:0 1.96148 [ 1.99799] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 3.189 {3/16:28} B:0 2.00110 [ 2.20082] ((3 . 4) (4 . 5) (5 . 6) (6 . 7) (9 . 10)) 6.925 {0/5:10} B:0 2.21328 [ 2.36760] ((3 . 1) (7 . 5) (8 . 6) (9 . 7) (10 . 8)) 11.641 {1/6:10} B:0 2.50011 [ 2.75008] ((4 . 7) (7 . 10) (8 . 11) (9 . 12)) 4.573 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.8899 [and 1/min{score2}: 0.8119] [4503, 6395]: Comparing 1o5u_A and 2arc_A, based on their crossing files. There are 10 (1 H + 9 S) secondary structure elements in 1o5u_A, of which 10 satisfy the size requirements. There are 13 (3 H + 10 S) secondary structure elements in 2arc_A, of which 13 satisfy the size requirements. 2.20691 [ 2.70348] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (9 . 11)) 4.269 {1/6:10} B:0 2.50076 [ 3.25035] ((1 . 8) (2 . 9) (3 . 10) (4 . 11)) 7.467 {0/6:6} B:0 2.50086 [ 3.25039] ((6 . 7) (7 . 8) (9 . 10) (10 . 11)) 7.698 {0/5:6} B:0 2.72583 [ 3.36169] ((3 . 7) (4 . 8) (6 . 10) (7 . 11)) 9.869 {1/5:6} B:0 3.57064 [ 3.91554] ((4 . 4) (5 . 6) (6 . 7) (8 . 8)) 6.660 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.9596 [and 1/min{score2}: 0.7576] -------------------------------------------------------------------------------------------------------------------------