------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4536 1o7f_A) ( 701 1cx4_A) 0.8457 0.9161 3.0492 ( 1 45 55) 0 0.8457 0.9161 13 12 ( 4536 1o7f_A) ( 702 1cx4_A) 0.9217 0.9980 4.6161 ( 1 55 66) 0 0.9217 0.9980 13 12 ( 4536 1o7f_A) ( 799 1dcs ) 0.3846 0.2174 6.5507 ( 0 9 10) 0 0.4350 0.2947 13 23 ( 4536 1o7f_A) ( 836 1dgw_A) 0.5384 0.4667 3.5345 ( 0 10 21) 0 0.5384 0.4667 13 15 ( 4536 1o7f_A) ( 930 1ds1_A) 0.3077 0.1818 6.0215 ( 0 1 6) 0 0.6139 0.3635 13 22 ( 4536 1o7f_A) ( 1045 1e5s_A) 0.3846 0.3125 6.1466 ( 0 7 10) 0 0.3846 0.3439 13 16 ( 4536 1o7f_A) ( 1230 1ep0_A) 0.3845 0.3333 7.0695 ( 0 9 10) 0 0.6153 0.5333 13 15 ( 4536 1o7f_A) ( 1312 1eyb_A) 0.5331 0.2413 3.1284 ( 1 12 21) 0 0.6141 0.2936 13 29 ( 4536 1o7f_A) ( 1505 1fi2_A) 0.5277 0.4925 3.2218 ( 1 10 21) 0 0.6153 0.5714 13 14 ( 4536 1o7f_A) ( 1624 1ft9_A) 0.4031 0.4069 6.2571 ( 9 37 45) 0 0.5367 0.6324 13 11 ( 4536 1o7f_A) ( 1894 1gp6_A) 0.3846 0.2273 5.7185 ( 0 6 10) 0 0.4555 0.3015 13 22 ( 4536 1o7f_A) ( 1946 1gtf_A) 0.3846 0.7143 2.5382 ( 0 5 10) 0 0.5385 0.9999 13 7 ( 4536 1o7f_A) ( 2049 1h2k_A) 0.6153 0.3200 3.3357 ( 0 17 28) 0 0.6922 0.3600 13 25 ( 4536 1o7f_A) ( 2409 1i5z_A) 0.7632 0.9784 5.5712 ( 2 38 45) 0 0.7632 0.9784 13 10 ( 4536 1o7f_A) ( 2477 1ig0_A) 0.3846 0.5000 3.3484 ( 0 5 10) 0 0.5277 0.6633 13 10 ( 4536 1o7f_A) ( 2479 1ig3_A) 0.5384 0.8744 4.2006 ( 0 11 21) 0 0.5384 0.8747 13 8 ( 4536 1o7f_A) ( 2699 1j1l_A) 0.5310 0.2797 3.3209 ( 1 11 21) 0 0.5384 0.3023 13 25 ( 4536 1o7f_A) ( 2735 1j58_A) 0.5310 0.2498 3.7465 ( 1 11 21) 0 0.6132 0.2857 13 28 ( 4536 1o7f_A) ( 3004 1jop_A) 0.5331 0.5754 2.9537 ( 1 12 21) 0 0.5385 0.5833 13 12 ( 4536 1o7f_A) ( 3032 1jr7_A) 0.3076 0.1739 10.0295 ( 0 6 6) 0 0.6419 0.3879 13 23 ( 4536 1o7f_A) ( 3066 1juh_A) 0.3077 0.1538 3.1018 ( 0 4 6) 0 0.5384 0.2692 13 26 ( 4536 1o7f_A) ( 3708 1lrh_A) 0.5346 0.5346 3.2379 ( 1 13 21) 0 0.5384 0.5384 13 13 ( 4536 1o7f_A) ( 3833 1m4o_A) 0.3796 0.4093 3.7145 ( 1 8 10) 0 0.3796 0.4093 13 12 ( 4536 1o7f_A) ( 4207 1ne6_A) 0.9097 0.9097 2.6672 ( 3 56 66) 0 0.9097 0.9097 13 13 ( 4536 1o7f_A) ( 4421 1nx4_A) 0.3696 0.2607 10.4812 ( 1 6 10) 0 0.5984 0.4184 13 19 ( 4536 1o7f_A) ( 4429 1nxm_A) 0.5277 0.4336 3.2510 ( 1 10 21) 0 0.6766 0.5568 13 16 ( 4536 1o7f_A) ( 4484 1o4t_A) 0.5384 0.6363 3.3992 ( 0 9 21) 0 0.5384 0.6363 13 11 ( 4536 1o7f_A) ( 4501 1o5l_A) 0.8418 0.9900 4.8346 ( 2 47 55) 0 0.8418 0.9900 13 11 ( 4536 1o7f_A) ( 4503 1o5u_A) 0.5473 0.6236 4.1955 ( 3 21 28) 0 0.5473 0.6236 13 10 ( 4536 1o7f_A) ( 4536 1o7f_A) 1.0000 1.0000 0.0000 ( 0 68 78) 0 1.0000 1.0000 13 13 ( 4536 1o7f_A) ( 4538 1o7f_A) 0.8260 0.9559 1.9791 ( 3 45 55) 0 0.8260 0.9559 13 11 ( 4536 1o7f_A) ( 4600 1od5_A) 0.6152 0.4999 4.9922 ( 0 18 28) 0 0.6153 0.5000 13 16 ( 4536 1o7f_A) ( 4601 1od5_A) 0.5224 0.4316 3.9496 ( 1 9 21) 0 0.5383 0.4374 13 16 ( 4536 1o7f_A) ( 4606 1odm_A) 0.6893 0.4496 5.4861 ( 1 20 36) 0 0.6893 0.4496 13 20 ( 4536 1o7f_A) ( 4631 1ofn_A) 0.5384 0.4118 3.1607 ( 0 10 21) 0 0.6153 0.4706 13 17 ( 4536 1o7f_A) ( 4671 1oih_A) 0.3077 0.1905 6.3337 ( 0 4 6) 0 0.7583 0.4752 13 21 ( 4536 1o7f_A) ( 4713 1omi_A) 0.6911 0.8955 5.7531 ( 1 29 36) 0 0.6911 0.8955 13 10 ( 4536 1o7f_A) ( 4782 1otj_A) 0.3077 0.1905 4.4562 ( 0 5 6) 0 0.6740 0.4268 13 21 ( 4536 1o7f_A) ( 5002 1pg6_A) 0.5382 0.3182 6.0202 ( 0 14 21) 0 0.6150 0.3636 13 22 ( 4536 1o7f_A) ( 5054 1pmi ) 0.5355 0.2000 2.9316 ( 1 14 21) 0 0.7523 0.3121 13 35 ( 4536 1o7f_A) ( 5193 1q3e_A) 0.9227 0.7499 2.9657 ( 1 58 66) 0 0.9227 0.7499 13 16 ( 4536 1o7f_A) ( 5480 1qwr_A) 0.4279 0.2134 8.1825 ( 2 12 15) 0 0.4995 0.3228 13 28 ( 4536 1o7f_A) ( 5489 1qxr_A) 0.3846 0.3571 2.5760 ( 0 4 10) 0 0.6151 0.5713 13 14 ( 4536 1o7f_A) ( 5604 1rc6_A) 0.5384 0.3333 3.6230 ( 0 11 21) 0 0.5384 0.3333 13 21 ( 4536 1o7f_A) ( 5840 1sq4_A) 0.5310 0.3673 3.4858 ( 1 11 21) 0 0.5384 0.3684 13 19 ( 4536 1o7f_A) ( 5856 1su4_A) 0.3846 0.8333 2.6504 ( 0 5 10) 0 0.3846 0.8333 13 6 ( 4536 1o7f_A) ( 6277 1vj2_A) 0.5384 0.6363 3.5061 ( 0 10 21) 0 0.5384 0.6363 13 11 ( 4536 1o7f_A) ( 6395 2arc_A) 0.3566 0.3566 9.2431 ( 2 10 10) 0 0.4377 0.4377 13 13 -------------------------------------------------------------------------------------------------------------------------