------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4631 1ofn_A) ( 701 1cx4_A) 0.4118 0.5833 3.8213 ( 0 10 21) 0 0.4492 0.5833 17 12 ( 4631 1ofn_A) ( 702 1cx4_A) 0.2941 0.4166 5.8326 ( 0 5 10) 0 0.4705 0.6664 17 12 ( 4631 1ofn_A) ( 799 1dcs ) 0.3269 0.3186 5.9052 ( 13 43 66) 0 0.5517 0.4258 17 23 ( 4631 1ofn_A) ( 836 1dgw_A) 0.5294 0.6000 2.2280 ( 0 22 36) 0 0.6348 0.7111 17 15 ( 4631 1ofn_A) ( 930 1ds1_A) 0.2353 0.1818 2.9133 ( 0 4 6) 0 0.5223 0.4531 17 22 ( 4631 1ofn_A) ( 1045 1e5s_A) 0.2941 0.3125 4.7170 ( 0 7 10) 0 0.5877 0.6242 17 16 ( 4631 1ofn_A) ( 1230 1ep0_A) 0.8823 0.9999 1.6949 ( 1 70 105) 0 0.8823 0.9999 17 15 ( 4631 1ofn_A) ( 1312 1eyb_A) 0.2941 0.1724 5.4362 ( 0 7 10) 0 0.5006 0.3394 17 29 ( 4631 1ofn_A) ( 1505 1fi2_A) 0.4706 0.5714 1.0723 ( 0 13 28) 0 0.5290 0.6417 17 14 ( 4631 1ofn_A) ( 1624 1ft9_A) 0.4706 0.7271 3.7042 ( 0 14 28) 0 0.5292 0.8167 17 11 ( 4631 1ofn_A) ( 1894 1gp6_A) 0.4948 0.4388 7.3335 ( 6 33 55) 0 0.4948 0.4388 17 22 ( 4631 1ofn_A) ( 1946 1gtf_A) 0.4117 0.9966 5.4771 ( 0 10 21) 0 0.4118 0.9999 17 7 ( 4631 1ofn_A) ( 2049 1h2k_A) 0.2941 0.2000 4.2188 ( 0 3 10) 0 0.6311 0.4376 17 25 ( 4631 1ofn_A) ( 2409 1i5z_A) 0.3967 0.5656 4.5888 ( 2 13 21) 0 0.4705 0.7987 17 10 ( 4631 1ofn_A) ( 2477 1ig0_A) 0.4706 0.7998 3.3437 ( 0 11 28) 0 0.5285 0.8873 17 10 ( 4631 1ofn_A) ( 2479 1ig3_A) 0.4706 0.9989 4.1347 ( 0 12 28) 0 0.4706 0.9989 17 8 ( 4631 1ofn_A) ( 2699 1j1l_A) 0.3620 0.3352 3.9662 ( 7 26 55) 0 0.6464 0.4913 17 25 ( 4631 1ofn_A) ( 2735 1j58_A) 0.4118 0.2500 1.9935 ( 0 12 21) 0 0.7049 0.4285 17 28 ( 4631 1ofn_A) ( 3004 1jop_A) 0.2941 0.4166 6.4075 ( 0 6 10) 0 0.4951 0.5334 17 12 ( 4631 1ofn_A) ( 3032 1jr7_A) 0.2353 0.1739 4.9614 ( 0 3 6) 0 0.6269 0.5005 17 23 ( 4631 1ofn_A) ( 3066 1juh_A) 0.3529 0.2308 2.0287 ( 0 6 15) 0 0.5983 0.4163 17 26 ( 4631 1ofn_A) ( 3708 1lrh_A) 0.4706 0.6154 1.9275 ( 0 18 28) 0 0.5879 0.7679 17 13 ( 4631 1ofn_A) ( 3833 1m4o_A) 0.2353 0.3333 4.2824 ( 0 4 6) 0 0.2353 0.3333 17 12 ( 4631 1ofn_A) ( 4207 1ne6_A) 0.3967 0.4889 4.1733 ( 2 13 21) 0 0.4706 0.6153 17 13 ( 4631 1ofn_A) ( 4421 1nx4_A) 0.2353 0.2105 2.9935 ( 0 4 6) 0 0.4929 0.4514 17 19 ( 4631 1ofn_A) ( 4429 1nxm_A) 0.8233 0.8747 2.6237 ( 1 52 91) 0 0.8233 0.8747 17 16 ( 4631 1ofn_A) ( 4484 1o4t_A) 0.4667 0.6961 2.4285 ( 1 11 28) 0 0.5286 0.8110 17 11 ( 4631 1ofn_A) ( 4501 1o5l_A) 0.3048 0.3170 7.7721 ( 5 16 28) 0 0.4705 0.7268 17 11 ( 4631 1ofn_A) ( 4503 1o5u_A) 0.5286 0.8889 2.9708 ( 1 19 36) 0 0.5286 0.8889 17 10 ( 4631 1ofn_A) ( 4536 1o7f_A) 0.4118 0.5384 3.1607 ( 0 10 21) 0 0.4706 0.6153 17 13 ( 4631 1ofn_A) ( 4538 1o7f_A) 0.4118 0.6363 2.7657 ( 0 10 21) 0 0.4118 0.6363 17 11 ( 4631 1ofn_A) ( 4600 1od5_A) 0.5294 0.5625 3.7214 ( 0 19 36) 0 0.5294 0.5625 17 16 ( 4631 1ofn_A) ( 4601 1od5_A) 0.4118 0.4375 1.9923 ( 0 10 21) 0 0.5881 0.6248 17 16 ( 4631 1ofn_A) ( 4606 1odm_A) 0.2941 0.2500 5.4563 ( 0 6 10) 0 0.4491 0.4080 17 20 ( 4631 1ofn_A) ( 4631 1ofn_A) 1.0000 1.0000 0.0000 ( 0 97 136) 0 1.0000 1.0000 17 17 ( 4631 1ofn_A) ( 4671 1oih_A) 0.2353 0.1905 2.5035 ( 0 3 6) 0 0.4097 0.3326 17 21 ( 4631 1ofn_A) ( 4713 1omi_A) 0.4074 0.6474 3.2943 ( 1 9 21) 0 0.4706 0.7997 17 10 ( 4631 1ofn_A) ( 4782 1otj_A) 0.2859 0.2351 7.5692 ( 1 5 10) 0 0.4703 0.3808 17 21 ( 4631 1ofn_A) ( 5002 1pg6_A) 0.3529 0.2727 3.9774 ( 0 5 15) 0 0.5876 0.4544 17 22 ( 4631 1ofn_A) ( 5054 1pmi ) 0.2941 0.1429 4.7235 ( 0 4 10) 0 0.8144 0.3997 17 35 ( 4631 1ofn_A) ( 5193 1q3e_A) 0.2353 0.2500 5.8140 ( 0 5 6) 0 0.4706 0.5000 17 16 ( 4631 1ofn_A) ( 5480 1qwr_A) 0.4118 0.2500 2.7467 ( 0 11 21) 0 0.6385 0.4044 17 28 ( 4631 1ofn_A) ( 5489 1qxr_A) 0.4118 0.5000 1.6005 ( 0 10 21) 0 0.4931 0.5618 17 14 ( 4631 1ofn_A) ( 5604 1rc6_A) 0.6337 0.5190 5.3606 ( 2 24 55) 0 0.6418 0.5219 17 21 ( 4631 1ofn_A) ( 5840 1sq4_A) 0.3253 0.3211 3.7188 ( 6 20 45) 0 0.7040 0.6305 17 19 ( 4631 1ofn_A) ( 5856 1su4_A) 0.2941 0.8331 3.3532 ( 0 4 10) 0 0.3135 0.8331 17 6 ( 4631 1ofn_A) ( 6277 1vj2_A) 0.4686 0.7105 2.4953 ( 1 13 28) 0 0.5875 0.9029 17 11 ( 4631 1ofn_A) ( 6395 2arc_A) 0.2918 0.3760 10.4773 ( 1 7 10) 0 0.5878 0.7674 17 13 -------------------------------------------------------------------------------------------------------------------------