------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 836 1dgw_A) ( 701 1cx4_A) 0.4667 0.5833 3.5197 ( 0 10 21) 0 0.4667 0.5833 15 12 ( 836 1dgw_A) ( 702 1cx4_A) 0.4667 0.5833 3.2847 ( 0 10 21) 0 0.4667 0.5833 15 12 ( 836 1dgw_A) ( 799 1dcs ) 0.7037 0.4745 5.5147 ( 3 34 55) 0 0.7037 0.4745 15 23 ( 836 1dgw_A) ( 836 1dgw_A) 1.0000 1.0000 0.0000 ( 0 81 105) 0 1.0000 1.0000 15 15 ( 836 1dgw_A) ( 930 1ds1_A) 0.4724 0.3523 4.1615 ( 2 12 28) 0 0.4724 0.3523 15 22 ( 836 1dgw_A) ( 1045 1e5s_A) 0.6490 0.6120 4.0516 ( 2 23 45) 0 0.7254 0.6817 15 16 ( 836 1dgw_A) ( 1230 1ep0_A) 0.5333 0.5333 2.7819 ( 0 14 28) 0 0.5333 0.5333 15 15 ( 836 1dgw_A) ( 1312 1eyb_A) 0.5333 0.2759 2.9322 ( 0 17 28) 0 0.7320 0.4102 15 29 ( 836 1dgw_A) ( 1505 1fi2_A) 0.7120 0.7563 2.7810 ( 3 37 55) 0 0.7120 0.7563 15 14 ( 836 1dgw_A) ( 1624 1ft9_A) 0.5333 0.7271 3.8362 ( 0 14 28) 0 0.5333 0.7271 15 11 ( 836 1dgw_A) ( 1894 1gp6_A) 0.6660 0.4544 3.5697 ( 1 27 45) 0 0.7115 0.4966 15 22 ( 836 1dgw_A) ( 1946 1gtf_A) 0.4000 0.8570 2.7743 ( 0 5 15) 0 0.4667 0.9998 15 7 ( 836 1dgw_A) ( 2049 1h2k_A) 0.3333 0.2000 3.4264 ( 0 5 10) 0 0.7326 0.4399 15 25 ( 836 1dgw_A) ( 2409 1i5z_A) 0.4667 0.6999 3.7206 ( 0 10 21) 0 0.4667 0.6999 15 10 ( 836 1dgw_A) ( 2477 1ig0_A) 0.5333 0.7998 3.7288 ( 0 11 28) 0 0.5333 0.7998 15 10 ( 836 1dgw_A) ( 2479 1ig3_A) 0.5333 0.9985 4.4619 ( 0 12 28) 0 0.5333 0.9985 15 8 ( 836 1dgw_A) ( 2699 1j1l_A) 0.6661 0.4000 3.5752 ( 1 28 45) 0 0.7329 0.4864 15 25 ( 836 1dgw_A) ( 2735 1j58_A) 0.8354 0.4628 2.4440 ( 4 55 78) 0 0.8354 0.4628 15 28 ( 836 1dgw_A) ( 3004 1jop_A) 0.4000 0.5000 4.1974 ( 0 5 15) 0 0.5733 0.6791 15 12 ( 836 1dgw_A) ( 3032 1jr7_A) 0.3208 0.2464 5.9540 ( 3 11 15) 0 0.4129 0.3705 15 23 ( 836 1dgw_A) ( 3066 1juh_A) 0.6000 0.3462 3.1301 ( 0 24 36) 0 0.6000 0.3943 15 26 ( 836 1dgw_A) ( 3708 1lrh_A) 0.7324 0.8442 5.8721 ( 0 33 55) 0 0.7324 0.8442 15 13 ( 836 1dgw_A) ( 3833 1m4o_A) 0.3258 0.3954 4.5725 ( 1 6 10) 0 0.3258 0.3954 15 12 ( 836 1dgw_A) ( 4207 1ne6_A) 0.4667 0.5384 3.6915 ( 0 10 21) 0 0.4667 0.5384 15 13 ( 836 1dgw_A) ( 4421 1nx4_A) 0.3021 0.2521 8.0862 ( 2 8 10) 0 0.5258 0.4187 15 19 ( 836 1dgw_A) ( 4429 1nxm_A) 0.5296 0.4973 2.4663 ( 1 13 28) 0 0.5333 0.5000 15 16 ( 836 1dgw_A) ( 4484 1o4t_A) 0.6659 0.9055 3.1436 ( 1 26 45) 0 0.6659 0.9055 15 11 ( 836 1dgw_A) ( 4501 1o5l_A) 0.4667 0.6363 3.6682 ( 0 10 21) 0 0.4667 0.6363 15 11 ( 836 1dgw_A) ( 4503 1o5u_A) 0.4586 0.6474 3.5315 ( 1 9 21) 0 0.4959 0.7000 15 10 ( 836 1dgw_A) ( 4536 1o7f_A) 0.4667 0.5384 3.5345 ( 0 10 21) 0 0.4667 0.5384 15 13 ( 836 1dgw_A) ( 4538 1o7f_A) 0.2667 0.3636 4.7433 ( 0 3 6) 0 0.5317 0.7195 15 11 ( 836 1dgw_A) ( 4600 1od5_A) 0.8646 0.8110 2.2959 ( 2 56 78) 0 0.8646 0.8110 15 16 ( 836 1dgw_A) ( 4601 1od5_A) 0.8315 0.7969 3.1607 ( 6 64 91) 0 0.8315 0.7969 15 16 ( 836 1dgw_A) ( 4606 1odm_A) 0.6666 0.5000 3.6168 ( 0 28 45) 0 0.6666 0.5000 15 20 ( 836 1dgw_A) ( 4631 1ofn_A) 0.6000 0.5294 2.2280 ( 0 22 36) 0 0.7111 0.6348 15 17 ( 836 1dgw_A) ( 4671 1oih_A) 0.3333 0.2381 4.9939 ( 0 8 10) 0 0.5824 0.4562 15 21 ( 836 1dgw_A) ( 4713 1omi_A) 0.4586 0.6475 2.8986 ( 1 9 21) 0 0.4667 0.7000 15 10 ( 836 1dgw_A) ( 4782 1otj_A) 0.3333 0.2381 6.8628 ( 0 3 10) 0 0.5231 0.4103 15 21 ( 836 1dgw_A) ( 5002 1pg6_A) 0.4000 0.2727 4.3484 ( 0 5 15) 0 0.7323 0.4999 15 22 ( 836 1dgw_A) ( 5054 1pmi ) 0.6655 0.2857 4.9327 ( 1 25 45) 0 0.7310 0.3570 15 35 ( 836 1dgw_A) ( 5193 1q3e_A) 0.4666 0.4375 3.7741 ( 0 10 21) 0 0.4667 0.4375 15 16 ( 836 1dgw_A) ( 5480 1qwr_A) 0.7855 0.4279 4.0322 ( 3 46 66) 0 0.7855 0.4279 15 28 ( 836 1dgw_A) ( 5489 1qxr_A) 0.5333 0.5714 1.7080 ( 0 16 28) 0 0.6118 0.6411 15 14 ( 836 1dgw_A) ( 5604 1rc6_A) 0.6000 0.4286 3.3897 ( 0 21 36) 0 0.7823 0.5680 15 21 ( 836 1dgw_A) ( 5840 1sq4_A) 0.6000 0.4737 3.4902 ( 0 19 36) 0 0.6000 0.4761 15 19 ( 836 1dgw_A) ( 5856 1su4_A) 0.4000 0.9991 3.9113 ( 0 8 15) 0 0.4000 0.9991 15 6 ( 836 1dgw_A) ( 6277 1vj2_A) 0.6551 0.8597 5.7664 ( 2 26 45) 0 0.6551 0.8597 15 11 ( 836 1dgw_A) ( 6395 2arc_A) 0.4667 0.5385 2.5308 ( 0 11 21) 0 0.5981 0.6885 15 13 -------------------------------------------------------------------------------------------------------------------------