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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  198 1at0  )  (  154 1am2  )     0.4719   0.4697   4.1491 (  15   72   91)   0     0.5123   0.4940   15  16
(  198 1at0  )  (  198 1at0  )     1.0000   1.0000   0.0000 (   0   90  105)   0     1.0000   1.0000   15  15
(  198 1at0  )  (  912 1dq3_A)     0.7874   0.6990   4.7739 (   3   48   66)   0     0.7874   0.6990   15  17
(  198 1at0  )  ( 1904 1gpp_A)     0.4667   0.3333   3.5389 (   0   14   21)   0     0.6346   0.5212   15  21
(  198 1at0  )  ( 3933 1mi8_A)     0.9386   0.8915   3.3644 (   6   82  105)   0     0.9386   0.8915   15  16

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