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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3933 1mi8_A)  (  154 1am2  )     0.7492   0.7492   3.2702 (   6   62   78)   0     0.7492   0.7492   16  16
( 3933 1mi8_A)  (  198 1at0  )     0.8915   0.9386   3.3644 (   6   82  105)   0     0.8915   0.9386   16  15
( 3933 1mi8_A)  (  912 1dq3_A)     0.7911   0.7585   3.3522 (   7   73   91)   0     0.7911   0.7585   16  17
( 3933 1mi8_A)  ( 1904 1gpp_A)     0.2887   0.2312   5.9802 (   2    8   10)   0     0.6257   0.5427   16  21
( 3933 1mi8_A)  ( 3933 1mi8_A)     1.0000   1.0000   0.0000 (   0  104  120)   0     1.0000   1.0000   16  16

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