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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2870 1jhf_A)  (  264 1b12_A)     0.3636   0.2353   4.9061 (   0    4    6)   0     0.4787   0.3431   11  17
( 2870 1jhf_A)  ( 1382 1f39_A)     0.5413   0.9270   3.9681 (   1   13   15)   0     0.5413   0.9270   11   6
( 2870 1jhf_A)  ( 2870 1jhf_A)     1.0000   1.0000   0.0000 (   0   45   55)   0     1.0000   1.0000   11  11
( 2870 1jhf_A)  ( 6053 1umu_A)     0.6363   0.8749   2.5165 (   0   17   21)   0     0.6363   0.8749   11   8

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