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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1616 1fs2_A)  (   44 1a4y_A)     0.9996   0.5151   3.2433 (   0    0  136)   0     0.9996   0.5151   17  33
( 1616 1fs2_A)  (   83 1a9n_A)     0.5294   0.8181   2.8851 (   0    0   36)   0     0.5882   0.9088   17  11
( 1616 1fs2_A)  (  791 1dce_A)     0.6470   0.9996   3.1057 (   0    0   55)   0     0.6470   0.9996   17  11
( 1616 1fs2_A)  ( 1616 1fs2_A)     1.0000   1.0000   0.0000 (   0   19  136)   0     1.0000   1.0000   17  17
( 1616 1fs2_A)  ( 2109 1h6t_A)     0.8820   0.8820   3.6609 (   0    0  105)   0     0.8820   0.8820   17  17
( 1616 1fs2_A)  ( 2111 1h6u_A)     0.8819   0.7892   3.8688 (   0    0  105)   0     0.9406   0.8417   17  19
( 1616 1fs2_A)  ( 2488 1igr_A)     0.4118   0.9993   3.6613 (   0    0   21)   0     0.4118   0.9993   17   7
( 1616 1fs2_A)  ( 2490 1igr_A)     0.4118   0.8747   3.6145 (   0    0   21)   0     0.4118   0.8748   17   8
( 1616 1fs2_A)  ( 2547 1io0_A)     0.6469   0.9988   4.2296 (   0    0   55)   0     0.6469   0.9988   17  11
( 1616 1fs2_A)  ( 2955 1jl5_A)     0.4706   0.4444   0.7131 (   0    1   28)   0     0.5882   0.5555   17  18
( 1616 1fs2_A)  ( 3856 1m6b_A)     0.3529   0.7500   2.7205 (   0    0   15)   0     0.3529   0.7500   17   8
( 1616 1fs2_A)  ( 3857 1m6b_A)     0.4706   0.6666   3.1824 (   0    0   28)   0     0.4706   0.6666   17  12
( 1616 1fs2_A)  ( 3890 1m9l_A)     0.7055   0.6314   4.7717 (   0    0   66)   0     0.7055   0.6314   17  19
( 1616 1fs2_A)  ( 4167 1n8y_C)     0.4118   0.7000   2.9334 (   0    0   21)   0     0.4705   0.7990   17  10
( 1616 1fs2_A)  ( 4169 1n8y_C)     0.4706   0.6666   3.2741 (   0    0   28)   0     0.4706   0.6666   17  12
( 1616 1fs2_A)  ( 4516 1o6v_A)     0.9406   0.4706   3.8627 (   0    2  120)   0     0.9409   0.4706   17  34
( 1616 1fs2_A)  ( 4645 1ogq_A)     0.5882   0.3704   3.3112 (   0    0   45)   0     0.8814   0.5555   17  27
( 1616 1fs2_A)  ( 4850 1ozn_A)     0.5882   0.7141   4.2020 (   0    0   45)   0     0.5882   0.7142   17  14
( 1616 1fs2_A)  ( 4940 1p9a_G)     0.5882   0.7142   3.5520 (   0    0   45)   0     0.5882   0.7142   17  14
( 1616 1fs2_A)  ( 5011 1pgv_A)     0.6468   0.9979   4.8502 (   0    0   55)   0     0.6468   0.9979   17  11
( 1616 1fs2_A)  ( 6362 1yrg_A)     0.9994   0.7390   3.5874 (   0    0  136)   0     0.9994   0.7390   17  23

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