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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4167 1n8y_C)  (   44 1a4y_A)     0.7994   0.2424   4.5858 (   0    0   28)   0     0.8975   0.2727   10  33
( 4167 1n8y_C)  (   83 1a9n_A)     0.6000   0.5454   2.7192 (   0    0   15)   0     0.6000   0.5454   10  11
( 4167 1n8y_C)  (  791 1dce_A)     0.6000   0.5454   2.5901 (   0    0   15)   0     0.6000   0.5454   10  11
( 4167 1n8y_C)  ( 1616 1fs2_A)     0.7000   0.4118   2.9334 (   0    0   21)   0     0.7990   0.4705   10  17
( 4167 1n8y_C)  ( 2109 1h6t_A)     0.6999   0.4118   3.1399 (   0    0   21)   0     0.6999   0.4118   10  17
( 4167 1n8y_C)  ( 2111 1h6u_A)     0.7000   0.3684   2.8465 (   0    0   21)   0     0.7000   0.3684   10  19
( 4167 1n8y_C)  ( 2488 1igr_A)     0.6997   0.9981   4.7200 (   0    3   21)   0     0.6997   0.9981   10   7
( 4167 1n8y_C)  ( 2490 1igr_A)     0.6000   0.7499   3.0519 (   0    5   15)   0     0.6999   0.8747   10   8
( 4167 1n8y_C)  ( 2547 1io0_A)     0.6999   0.6363   3.2405 (   0    5   21)   0     0.7993   0.7268   10  11
( 4167 1n8y_C)  ( 2955 1jl5_A)     0.6997   0.3889   4.6191 (   0    4   21)   0     0.6997   0.3889   10  18
( 4167 1n8y_C)  ( 3856 1m6b_A)     0.6000   0.7500   0.9892 (   0    0   15)   0     0.6000   0.7500   10   8
( 4167 1n8y_C)  ( 3857 1m6b_A)     0.8999   0.7500   2.3075 (   0   19   36)   0     0.8999   0.7500   10  12
( 4167 1n8y_C)  ( 3890 1m9l_A)     0.6998   0.3684   4.0017 (   0   11   21)   0     0.7842   0.4204   10  19
( 4167 1n8y_C)  ( 4167 1n8y_C)     1.0000   1.0000   0.0000 (   0   27   45)   0     1.0000   1.0000   10  10
( 4167 1n8y_C)  ( 4169 1n8y_C)     0.8000   0.6667   2.3258 (   0   12   28)   0     0.8000   0.6667   10  12
( 4167 1n8y_C)  ( 4516 1o6v_A)     0.8988   0.2647   4.7994 (   0    7   36)   0     0.8988   0.2647   10  34
( 4167 1n8y_C)  ( 4645 1ogq_A)     0.8984   0.3333   5.1889 (   0   10   36)   0     0.8987   0.3333   10  27
( 4167 1n8y_C)  ( 4850 1ozn_A)     0.5999   0.4286   3.9955 (   0    0   15)   0     0.5999   0.4286   10  14
( 4167 1n8y_C)  ( 4940 1p9a_G)     0.6000   0.4286   2.8607 (   0    0   15)   0     0.6000   0.4286   10  14
( 4167 1n8y_C)  ( 5011 1pgv_A)     0.6999   0.6363   3.4089 (   0    5   21)   0     0.7991   0.7267   10  11
( 4167 1n8y_C)  ( 6362 1yrg_A)     0.7991   0.3478   5.1267 (   0    0   28)   0     0.7991   0.3478   10  23

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