------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [4850, 44]: Comparing 1ozn_A and 1a4y_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 33 (16 H + 17 S) secondary structure elements in 1a4y_A, of which 33 satisfy the size requirements. 1.40032 [ 3.30002] ((5 . 3) (7 . 5) (8 . 7) (9 . 9) (10 . 11) (12 . 13) (14 . 15) (15 . 16) (16 . 17) (18 . 18)) 3.883 {0/0:45} B:0 1.40036 [ 3.30003] ((5 . 5) (7 . 7) (8 . 9) (9 . 11) (10 . 13) (12 . 15) (14 . 17) (15 . 18) (16 . 19) (18 . 20)) 4.022 {0/0:45} B:0 1.40055 [ 3.30004] ((5 . 1) (7 . 3) (8 . 5) (9 . 7) (10 . 9) (12 . 11) (14 . 13) (15 . 14) (16 . 15) (18 . 16)) 4.455 {0/0:45} B:0 1.55567 [ 3.66668] ((1 . 17) (2 . 19) (3 . 21) (5 . 23) (7 . 25) (8 . 27) (9 . 29) (10 . 31) (12 . 33)) 3.293 {0/0:36} B:0 1.75005 [ 4.12500] ((5 . 17) (7 . 19) (8 . 21) (9 . 23) (10 . 25) (12 . 27) (15 . 28) (16 . 29)) 2.907 {0/0:28} B:0 SIMILARITY (1/min{score1}): 0.9268 [and 1/min{score2}: 0.3939] [4850, 83]: Comparing 1ozn_A and 1a9n_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 17 (7 H + 10 S) secondary structure elements in 1a9n_A, of which 11 satisfy the size requirements. 2.33334 [ 1.83334] ((1 . 2) (2 . 3) (3 . 5) (5 . 7) (7 . 10) (8 . 12)) 2.005 {0/0:15} B:0 2.33335 [ 1.83337] ((2 . 2) (3 . 3) (5 . 5) (7 . 7) (8 . 10) (9 . 12)) 2.780 {0/0:15} B:0 2.80000 [ 2.20000] ((2 . 3) (3 . 5) (5 . 7) (7 . 10) (8 . 12)) 1.148 {0/0:10} B:0 2.80002 [ 2.20005] ((7 . 2) (8 . 5) (9 . 7) (10 . 10) (12 . 12)) 3.406 {0/0:10} B:0 2.80002 [ 2.20005] ((5 . 2) (7 . 5) (8 . 7) (9 . 10) (10 . 12)) 3.420 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.4286 [and 1/min{score2}: 0.5455] [4850, 791]: Comparing 1ozn_A and 1dce_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 36 (22 H + 14 S) secondary structure elements in 1dce_A, of which 11 satisfy the size requirements. 2.33333 [ 1.83333] ((2 . 25) (3 . 27) (5 . 29) (7 . 31) (8 . 33) (9 . 36)) 0.498 {0/0:15} B:0 2.33333 [ 1.83333] ((5 . 25) (7 . 27) (8 . 29) (9 . 31) (10 . 33) (12 . 36)) 0.562 {0/0:15} B:0 2.33333 [ 1.83333] ((3 . 25) (5 . 27) (7 . 29) (8 . 31) (9 . 33) (10 . 36)) 0.624 {0/0:15} B:0 2.33333 [ 1.83333] ((9 . 25) (10 . 27) (12 . 29) (14 . 31) (15 . 32) (16 . 33)) 1.048 {0/0:15} B:0 2.33335 [ 1.83337] ((1 . 25) (2 . 27) (3 . 29) (5 . 31) (7 . 33) (8 . 36)) 2.836 {0/0:15} B:0 SIMILARITY (1/min{score1}): 0.5712 [and 1/min{score2}: 0.7266] [4850, 1616]: Comparing 1ozn_A and 1fs2_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 23 (14 H + 9 S) secondary structure elements in 1fs2_A, of which 17 satisfy the size requirements. 1.40043 [ 1.70024] ((5 . 6) (7 . 9) (8 . 11) (9 . 13) (10 . 15) (12 . 17) (14 . 19) (15 . 20) (16 . 21) (18 . 22)) 4.202 {0/0:45} B:0 1.55567 [ 1.88895] ((5 . 6) (7 . 9) (8 . 11) (9 . 13) (10 . 15) (12 . 17) (14 . 19) (15 . 20) (16 . 21)) 3.285 {0/0:36} B:0 1.55578 [ 1.88901] ((7 . 9) (8 . 11) (9 . 13) (10 . 15) (12 . 17) (14 . 19) (15 . 20) (16 . 21) (18 . 22)) 3.840 {0/0:36} B:0 1.75000 [ 2.12500] ((2 . 6) (3 . 9) (5 . 11) (7 . 13) (8 . 15) (9 . 17) (10 . 19) (12 . 21)) 1.606 {0/0:28} B:0 1.75000 [ 2.12500] ((3 . 6) (5 . 9) (7 . 11) (8 . 13) (9 . 15) (10 . 17) (12 . 19) (14 . 21)) 1.622 {0/0:28} B:0 SIMILARITY (1/min{score1}): 0.7142 [and 1/min{score2}: 0.5882] [4850, 2109]: Comparing 1ozn_A and 1h6t_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 29 (12 H + 17 S) secondary structure elements in 1h6t_A, of which 17 satisfy the size requirements. 1.40029 [ 1.70016] ((7 . 7) (8 . 9) (9 . 11) (10 . 13) (12 . 15) (14 . 17) (15 . 18) (16 . 19) (18 . 20) (20 . 21)) 3.792 {0/10:45} B:0 1.55559 [ 1.88891] ((7 . 7) (8 . 9) (9 . 11) (10 . 13) (12 . 15) (14 . 17) (15 . 18) (16 . 19) (18 . 20)) 2.424 {0/5:36} B:0 1.55569 [ 1.88897] ((8 . 7) (9 . 9) (10 . 11) (12 . 13) (14 . 15) (15 . 16) (16 . 17) (18 . 18) (20 . 21)) 3.420 {0/8:36} B:0 1.55573 [ 1.88899] ((8 . 7) (9 . 9) (10 . 11) (12 . 13) (14 . 15) (15 . 16) (16 . 17) (18 . 20) (20 . 21)) 3.637 {0/9:36} B:0 1.55575 [ 1.88900] ((5 . 7) (7 . 9) (8 . 11) (9 . 13) (10 . 15) (12 . 17) (14 . 19) (15 . 20) (16 . 21)) 3.733 {0/3:36} B:0 SIMILARITY (1/min{score1}): 0.7141 [and 1/min{score2}: 0.5882] [4850, 2111]: Comparing 1ozn_A and 1h6u_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 30 (12 H + 18 S) secondary structure elements in 1h6u_A, of which 19 satisfy the size requirements. 1.27308 [ 1.72741] ((5 . 6) (7 . 8) (8 . 10) (9 . 12) (10 . 14) (12 . 16) (14 . 18) (15 . 19) (16 . 20) (18 . 21) (20 . 22)) 3.716 {0/13:55} B:0 1.40006 [ 1.90002] ((5 . 6) (7 . 8) (8 . 10) (9 . 12) (10 . 14) (12 . 16) (14 . 18) (15 . 19) (16 . 20) (18 . 21)) 2.536 {0/6:45} B:0 1.40016 [ 1.90006] ((7 . 6) (8 . 8) (9 . 10) (10 . 12) (12 . 14) (14 . 16) (15 . 17) (16 . 18) (18 . 19) (20 . 22)) 3.264 {0/10:45} B:0 1.40023 [ 1.90009] ((7 . 6) (8 . 8) (9 . 10) (10 . 12) (12 . 14) (14 . 16) (15 . 17) (16 . 18) (18 . 21) (20 . 22)) 3.575 {0/12:45} B:0 1.40023 [ 1.90009] ((3 . 6) (5 . 8) (7 . 10) (8 . 12) (9 . 14) (10 . 16) (12 . 18) (14 . 20) (15 . 21) (16 . 22)) 3.602 {0/4:45} B:0 SIMILARITY (1/min{score1}): 0.7855 [and 1/min{score2}: 0.5789] [4850, 2488]: Comparing 1ozn_A and 1igr_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 43 (11 H + 32 S) secondary structure elements in 1igr_A, of which 7 satisfy the size requirements. 2.33336 [ 1.16688] ((2 . 2) (3 . 5) (5 . 7) (7 . 10) (8 . 12) (9 . 15)) 3.086 {0/0:15} B:0 2.33336 [ 1.16689] ((7 . 2) (8 . 5) (9 . 7) (10 . 10) (12 . 12) (14 . 15)) 3.101 {0/0:15} B:0 2.33336 [ 1.16689] ((5 . 2) (7 . 5) (8 . 7) (9 . 10) (10 . 12) (12 . 15)) 3.104 {0/0:15} B:0 2.33336 [ 1.16690] ((3 . 2) (5 . 5) (7 . 7) (8 . 10) (9 . 12) (10 . 15)) 3.125 {0/0:15} B:0 2.33336 [ 1.16690] ((8 . 2) (9 . 5) (10 . 7) (12 . 10) (14 . 12) (16 . 15)) 3.128 {0/0:15} B:0 SIMILARITY (1/min{score1}): 0.4286 [and 1/min{score2}: 0.8570] [4850, 2490]: Comparing 1ozn_A and 1igr_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 43 (11 H + 32 S) secondary structure elements in 1igr_A, of which 8 satisfy the size requirements. 2.33344 [ 1.33389] ((3 . 31) (5 . 32) (7 . 34) (8 . 37) (9 . 39) (10 . 41)) 4.317 {0/0:15} B:0 2.33344 [ 1.33390] ((5 . 31) (7 . 32) (8 . 34) (9 . 37) (10 . 39) (12 . 41)) 4.333 {0/0:15} B:0 2.33344 [ 1.33391] ((2 . 31) (3 . 32) (5 . 34) (7 . 37) (8 . 39) (9 . 41)) 4.345 {0/0:15} B:0 2.33379 [ 1.33578] ((3 . 31) (7 . 34) (9 . 37) (10 . 39) (12 . 41) (15 . 42)) 6.252 {0/1:15} B:0 2.33448 [ 1.33945] ((2 . 31) (5 . 34) (8 . 37) (9 . 39) (10 . 41) (15 . 42)) 7.866 {0/1:15} B:0 SIMILARITY (1/min{score1}): 0.4286 [and 1/min{score2}: 0.7497] [4850, 2547]: Comparing 1ozn_A and 1io0_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1io0_A, of which 11 satisfy the size requirements. 2.00037 [ 1.57220] ((9 . 2) (10 . 4) (12 . 6) (14 . 8) (15 . 9) (16 . 10) (18 . 11)) 5.294 {0/0:21} B:0 2.33335 [ 1.83336] ((10 . 2) (12 . 4) (14 . 6) (15 . 7) (16 . 8) (18 . 9)) 2.659 {0/0:15} B:0 2.33341 [ 1.83349] ((8 . 2) (9 . 4) (10 . 6) (12 . 8) (14 . 10) (15 . 11)) 3.974 {0/0:15} B:0 2.33342 [ 1.83351] ((7 . 2) (8 . 4) (9 . 6) (10 . 8) (12 . 10) (15 . 11)) 4.100 {0/0:15} B:0 2.33354 [ 1.83377] ((5 . 2) (7 . 4) (8 . 6) (9 . 8) (10 . 10) (15 . 11)) 5.152 {0/0:15} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.6363] [4850, 2955]: Comparing 1ozn_A and 1jl5_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 20 (2 H + 18 S) secondary structure elements in 1jl5_A, of which 18 satisfy the size requirements. 1.27283 [ 1.63641] ((1 . 3) (2 . 4) (3 . 5) (5 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (12 . 11) (14 . 12) (16 . 13)) 2.754 {0/0:55} B:0 1.27283 [ 1.63641] ((1 . 4) (2 . 5) (3 . 6) (5 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (12 . 12) (14 . 13) (16 . 15)) 2.760 {0/0:55} B:0 1.27284 [ 1.63641] ((1 . 5) (2 . 6) (3 . 7) (5 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (12 . 13) (14 . 15) (16 . 17)) 2.763 {0/0:55} B:0 1.27284 [ 1.63642] ((1 . 6) (2 . 7) (3 . 8) (5 . 9) (7 . 10) (8 . 11) (9 . 12) (10 . 13) (12 . 15) (14 . 17) (16 . 18)) 2.815 {0/0:55} B:0 1.27285 [ 1.63642] ((1 . 5) (2 . 6) (3 . 7) (5 . 8) (7 . 9) (8 . 10) (9 . 12) (10 . 13) (12 . 15) (14 . 17) (16 . 18)) 2.850 {0/0:55} B:0 SIMILARITY (1/min{score1}): 0.7856 [and 1/min{score2}: 0.6111] [4850, 3856]: Comparing 1ozn_A and 1m6b_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 48 (10 H + 38 S) secondary structure elements in 1m6b_A, of which 8 satisfy the size requirements. 2.80000 [ 1.60001] ((2 . 3) (3 . 6) (5 . 9) (7 . 12) (8 . 14)) 1.762 {0/0:10} B:0 2.80014 [ 1.60077] ((5 . 3) (7 . 7) (8 . 9) (9 . 12) (10 . 14)) 5.370 {0/0:10} B:0 2.80014 [ 1.60077] ((7 . 3) (8 . 7) (9 . 9) (10 . 12) (12 . 14)) 5.371 {0/0:10} B:0 2.80015 [ 1.60079] ((3 . 3) (5 . 7) (7 . 9) (8 . 12) (9 . 14)) 5.390 {0/0:10} B:0 2.80015 [ 1.60079] ((8 . 3) (9 . 7) (10 . 9) (12 . 12) (14 . 14)) 5.406 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.3571 [and 1/min{score2}: 0.6250] [4850, 3857]: Comparing 1ozn_A and 1m6b_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 48 (10 H + 38 S) secondary structure elements in 1m6b_A, of which 12 satisfy the size requirements. 2.33341 [ 2.00012] ((3 . 26) (7 . 29) (8 . 33) (9 . 36) (10 . 38) (12 . 40)) 3.943 {0/0:15} B:0 2.33341 [ 2.00012] ((2 . 26) (5 . 29) (7 . 33) (8 . 36) (9 . 38) (10 . 40)) 3.980 {0/0:15} B:0 2.80000 [ 2.40000] ((7 . 29) (8 . 33) (9 . 36) (10 . 38) (12 . 40)) 1.470 {0/0:10} B:0 2.80000 [ 2.40000] ((3 . 29) (5 . 33) (7 . 36) (8 . 38) (9 . 40)) 1.470 {0/0:10} B:0 2.80000 [ 2.40000] ((2 . 29) (3 . 33) (5 . 36) (7 . 38) (8 . 40)) 1.478 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.4286 [and 1/min{score2}: 0.5000] [4850, 3890]: Comparing 1ozn_A and 1m9l_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 21 (10 H + 11 S) secondary structure elements in 1m9l_A, of which 19 satisfy the size requirements. 2.00008 [ 2.71432] ((9 . 4) (10 . 7) (12 . 10) (14 . 13) (15 . 15) (16 . 16) (18 . 18)) 3.598 {0/0:21} B:0 2.33334 [ 3.16667] ((9 . 4) (10 . 7) (12 . 10) (14 . 13) (15 . 15) (16 . 16)) 2.055 {0/0:15} B:0 2.33334 [ 3.16667] ((10 . 4) (12 . 7) (14 . 10) (15 . 12) (16 . 13) (18 . 15)) 2.334 {0/2:15} B:0 2.80003 [ 3.80001] ((10 . 5) (12 . 8) (14 . 11) (15 . 12) (16 . 14)) 3.583 {0/0:10} B:0 2.80003 [ 3.80001] ((14 . 4) (15 . 6) (16 . 7) (18 . 9) (20 . 11)) 3.687 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.5711 [and 1/min{score2}: 0.4210] [4850, 4167]: Comparing 1ozn_A and 1n8y_C, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 53 (14 H + 39 S) secondary structure elements in 1n8y_C, of which 10 satisfy the size requirements. 2.00023 [ 1.42920] ((7 . 1) (8 . 3) (9 . 4) (10 . 7) (12 . 9) (14 . 11) (16 . 14)) 4.678 {0/0:21} B:0 2.33341 [ 1.66688] ((7 . 1) (9 . 4) (10 . 7) (12 . 9) (14 . 11) (16 . 14)) 3.992 {0/0:15} B:0 2.33343 [ 1.66694] ((8 . 1) (9 . 4) (10 . 7) (12 . 9) (14 . 11) (16 . 14)) 4.269 {0/0:15} B:0 2.80004 [ 2.00012] ((8 . 1) (10 . 4) (12 . 7) (14 . 9) (16 . 11)) 4.005 {0/0:10} B:0 2.80007 [ 2.00018] ((9 . 1) (10 . 4) (12 . 7) (14 . 9) (16 . 11)) 4.424 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.6997] [4850, 4169]: Comparing 1ozn_A and 1n8y_C, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 53 (14 H + 39 S) secondary structure elements in 1n8y_C, of which 12 satisfy the size requirements. 2.80000 [ 2.40000] ((2 . 30) (3 . 34) (5 . 37) (7 . 39) (8 . 41)) 1.518 {0/0:10} B:0 2.80000 [ 2.40000] ((8 . 30) (9 . 34) (10 . 37) (12 . 39) (14 . 41)) 1.518 {0/0:10} B:0 2.80000 [ 2.40000] ((7 . 30) (8 . 34) (9 . 37) (10 . 39) (12 . 41)) 1.529 {0/0:10} B:0 2.80000 [ 2.40000] ((5 . 30) (7 . 34) (8 . 37) (9 . 39) (10 . 41)) 1.541 {0/0:10} B:0 2.80000 [ 2.40000] ((3 . 30) (5 . 34) (7 . 37) (8 . 39) (9 . 41)) 1.565 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.4285 [and 1/min{score2}: 0.4999] [4850, 4516]: Comparing 1ozn_A and 1o6v_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 43 (18 H + 25 S) secondary structure elements in 1o6v_A, of which 34 satisfy the size requirements. 1.07775 [ 2.61544] ((2 . 12) (3 . 14) (5 . 16) (7 . 18) (8 . 20) (9 . 22) (10 . 24) (12 . 26) (14 . 28) (15 . 29) (16 . 30) (18 . 31) (20 . 37)) 4.055 {0/11:78} B:0 1.07786 [ 2.61545] ((2 . 12) (3 . 14) (5 . 16) (7 . 18) (8 . 20) (9 . 24) (10 . 26) (12 . 28) (14 . 30) (15 . 31) (16 . 32) (18 . 33) (20 . 37)) 4.187 {0/17:78} B:0 1.16708 [ 2.83336] ((2 . 10) (3 . 12) (5 . 14) (7 . 16) (8 . 18) (9 . 20) (10 . 22) (12 . 24) (14 . 26) (15 . 27) (16 . 28) (18 . 29)) 3.631 {0/6:66} B:0 1.16709 [ 2.83336] ((2 . 8) (3 . 10) (5 . 12) (7 . 14) (8 . 16) (9 . 18) (10 . 20) (12 . 22) (14 . 24) (15 . 25) (16 . 26) (18 . 27)) 3.651 {0/8:66} B:0 1.16712 [ 2.83337] ((2 . 6) (3 . 8) (5 . 10) (7 . 12) (8 . 14) (9 . 16) (10 . 18) (12 . 20) (14 . 22) (15 . 23) (16 . 24) (18 . 25)) 3.710 {0/8:66} B:0 SIMILARITY (1/min{score1}): 0.9280 [and 1/min{score2}: 0.4103] [4850, 4645]: Comparing 1ozn_A and 1ogq_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 35 (13 H + 22 S) secondary structure elements in 1ogq_A, of which 27 satisfy the size requirements. 1.27301 [ 2.45458] ((1 . 3) (2 . 4) (3 . 7) (5 . 10) (7 . 13) (8 . 16) (9 . 19) (10 . 22) (12 . 25) (14 . 28) (16 . 31)) 3.510 {0/0:55} B:0 1.40027 [ 2.70004] ((1 . 4) (2 . 7) (3 . 10) (5 . 13) (7 . 16) (8 . 19) (9 . 22) (10 . 25) (12 . 28) (14 . 31)) 3.734 {0/0:45} B:0 1.40029 [ 2.70004] ((1 . 3) (2 . 4) (3 . 7) (5 . 10) (7 . 13) (8 . 16) (9 . 22) (10 . 25) (12 . 28) (14 . 31)) 3.797 {0/0:45} B:0 1.40030 [ 2.70004] ((2 . 3) (3 . 4) (5 . 7) (7 . 10) (8 . 13) (9 . 16) (10 . 19) (12 . 22) (14 . 25) (16 . 28)) 3.834 {0/0:45} B:0 1.42783 [ 2.48005] ((2 . 3) (3 . 4) (5 . 7) (7 . 10) (8 . 13) (9 . 16) (10 . 19) (12 . 22) (14 . 25) (16 . 28) (18 . 30)) 4.817 {1/9:55} B:0 SIMILARITY (1/min{score1}): 0.8562 [and 1/min{score2}: 0.4444] [4850, 4850]: Comparing 1ozn_A and 1ozn_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (12 . 12) (14 . 14) (15 . 15) (16 . 16) (18 . 18) (20 . 20)) 0.000 {0/27:91} B:0 1.16667 [ 1.16667] ((2 . 3) (5 . 5) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (12 . 12) (14 . 14) (15 . 15) (16 . 16) (18 . 18) (20 . 20)) 1.306 {0/21:66} B:0 1.40003 [ 1.40003] ((3 . 2) (5 . 3) (7 . 5) (8 . 7) (9 . 8) (10 . 9) (12 . 10) (14 . 12) (16 . 14) (18 . 15)) 2.167 {0/6:45} B:0 1.40003 [ 1.40003] ((2 . 3) (3 . 5) (5 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 12) (12 . 14) (14 . 16) (15 . 18)) 2.167 {0/6:45} B:0 1.55558 [ 1.55558] ((2 . 5) (3 . 7) (5 . 8) (7 . 9) (8 . 10) (9 . 12) (10 . 14) (12 . 16) (15 . 18)) 2.106 {0/6:36} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [4850, 4940]: Comparing 1ozn_A and 1p9a_G, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 16 (4 H + 12 S) secondary structure elements in 1p9a_G, of which 14 satisfy the size requirements. 1.27293 [ 1.27293] ((1 . 1) (2 . 2) (3 . 3) (5 . 6) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (12 . 12) (14 . 13) (15 . 14)) 3.231 {0/7:55} B:0 1.40004 [ 1.40004] ((3 . 2) (5 . 3) (7 . 6) (8 . 8) (9 . 9) (10 . 10) (12 . 11) (14 . 12) (16 . 13) (18 . 14)) 2.284 {0/8:45} B:0 1.40006 [ 1.40006] ((2 . 1) (3 . 2) (5 . 3) (7 . 6) (8 . 8) (9 . 9) (10 . 10) (12 . 11) (14 . 12) (16 . 13)) 2.528 {0/0:45} B:0 1.40013 [ 1.40013] ((2 . 2) (3 . 3) (5 . 6) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (12 . 12) (14 . 13) (15 . 14)) 3.089 {0/6:45} B:0 1.42721 [ 1.42721] ((2 . 1) (3 . 2) (5 . 3) (7 . 6) (8 . 8) (9 . 9) (10 . 10) (12 . 11) (14 . 12) (16 . 13) (18 . 14)) 2.867 {1/9:55} B:0 SIMILARITY (1/min{score1}): 0.7856 [and 1/min{score2}: 0.7856] [4850, 5011]: Comparing 1ozn_A and 1pgv_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1pgv_A, of which 11 satisfy the size requirements. 2.00059 [ 1.57265] ((9 . 2) (10 . 4) (12 . 7) (14 . 9) (15 . 10) (16 . 11) (18 . 12)) 5.934 {0/4:21} B:0 2.33335 [ 1.83336] ((10 . 2) (12 . 4) (14 . 7) (15 . 8) (16 . 9) (18 . 10)) 2.535 {0/0:15} B:0 2.33336 [ 1.83339] ((9 . 2) (12 . 4) (14 . 7) (15 . 8) (16 . 9) (18 . 10)) 3.080 {0/0:15} B:0 2.33336 [ 1.83340] ((9 . 2) (10 . 4) (12 . 7) (15 . 8) (16 . 9) (18 . 10)) 3.193 {0/0:15} B:0 2.33348 [ 1.83363] ((7 . 2) (8 . 4) (9 . 7) (10 . 9) (12 . 11) (15 . 12)) 4.686 {0/3:15} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.6363] [4850, 6362]: Comparing 1ozn_A and 1yrg_A, based on their crossing files. There are 23 (5 H + 18 S) secondary structure elements in 1ozn_A, of which 14 satisfy the size requirements. There are 26 (12 H + 14 S) secondary structure elements in 1yrg_A, of which 23 satisfy the size requirements. 1.16806 [ 1.91698] ((2 . 5) (3 . 8) (5 . 10) (7 . 12) (8 . 14) (9 . 16) (10 . 18) (12 . 20) (14 . 22) (15 . 23) (16 . 24) (18 . 25)) 4.913 {0/5:66} B:0 1.27301 [ 2.09097] ((2 . 5) (3 . 8) (5 . 10) (7 . 12) (8 . 14) (9 . 16) (10 . 18) (12 . 20) (14 . 22) (15 . 23) (16 . 24)) 3.517 {0/0:55} B:0 1.40011 [ 2.30002] ((5 . 1) (7 . 5) (8 . 8) (9 . 10) (10 . 12) (12 . 14) (14 . 16) (15 . 17) (16 . 18) (18 . 19)) 2.975 {0/0:45} B:0 1.40013 [ 2.30003] ((5 . 5) (7 . 8) (8 . 10) (9 . 12) (10 . 14) (12 . 16) (14 . 18) (15 . 19) (16 . 20) (18 . 21)) 3.081 {0/0:45} B:0 1.40040 [ 2.30009] ((2 . 8) (3 . 10) (5 . 12) (7 . 14) (8 . 16) (9 . 18) (10 . 20) (12 . 22) (14 . 24) (15 . 25)) 4.120 {0/4:45} B:0 SIMILARITY (1/min{score1}): 0.9275 [and 1/min{score2}: 0.5651] -------------------------------------------------------------------------------------------------------------------------