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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(   83 1a9n_A)  (   44 1a4y_A)     0.9080   0.3030   4.6870 (   0    0   45)   0     0.9981   0.3333   11  33
(   83 1a9n_A)  (   83 1a9n_A)     1.0000   1.0000   0.0000 (   0   36   55)   0     1.0000   1.0000   11  11
(   83 1a9n_A)  (  791 1dce_A)     0.7273   0.7273   1.4657 (   0    9   28)   0     0.8175   0.8175   11  11
(   83 1a9n_A)  ( 1616 1fs2_A)     0.8181   0.5294   2.8851 (   0    0   36)   0     0.9088   0.5882   11  17
(   83 1a9n_A)  ( 2109 1h6t_A)     0.6363   0.4118   3.1242 (   0    6   21)   0     0.7270   0.4706   11  17
(   83 1a9n_A)  ( 2111 1h6u_A)     0.7272   0.4210   2.9784 (   0    4   28)   0     0.8170   0.4736   11  19
(   83 1a9n_A)  ( 2488 1igr_A)     0.5454   0.8567   4.0161 (   0    0   15)   0     0.5454   0.8567   11   7
(   83 1a9n_A)  ( 2490 1igr_A)     0.5454   0.7496   4.4706 (   0    1   15)   0     0.6362   0.8744   11   8
(   83 1a9n_A)  ( 2547 1io0_A)     0.5455   0.5455   2.0065 (   0    0   15)   0     0.6363   0.6363   11  11
(   83 1a9n_A)  ( 2955 1jl5_A)     0.5454   0.3333   2.5719 (   0    0   15)   0     0.5454   0.3333   11  18
(   83 1a9n_A)  ( 3856 1m6b_A)     0.3636   0.5000   1.6629 (   0    0    6)   0     0.3636   0.5000   11   8
(   83 1a9n_A)  ( 3857 1m6b_A)     0.5453   0.4999   5.3027 (   0    3   15)   0     0.5586   0.5286   11  12
(   83 1a9n_A)  ( 3890 1m9l_A)     0.7272   0.4210   3.0008 (   0    6   28)   0     0.7953   0.4721   11  19
(   83 1a9n_A)  ( 4167 1n8y_C)     0.5454   0.6000   2.7192 (   0    0   15)   0     0.5454   0.6000   11  10
(   83 1a9n_A)  ( 4169 1n8y_C)     0.5454   0.5000   3.1049 (   0    0   15)   0     0.6363   0.5833   11  12
(   83 1a9n_A)  ( 4516 1o6v_A)     0.8179   0.2647   3.6615 (   0    3   36)   0     0.8180   0.2647   11  34
(   83 1a9n_A)  ( 4645 1ogq_A)     0.5454   0.2222   3.4166 (   0    0   15)   0     0.6363   0.2774   11  27
(   83 1a9n_A)  ( 4850 1ozn_A)     0.5455   0.4286   2.0045 (   0    0   15)   0     0.5455   0.4286   11  14
(   83 1a9n_A)  ( 4940 1p9a_G)     0.5455   0.4286   1.4811 (   0    0   15)   0     0.6360   0.4999   11  14
(   83 1a9n_A)  ( 5011 1pgv_A)     0.4545   0.4545   1.1779 (   0    0   10)   0     0.7271   0.7271   11  11
(   83 1a9n_A)  ( 6362 1yrg_A)     0.9077   0.4347   4.8898 (   0    0   45)   0     0.9976   0.4782   11  23

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