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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4027 1mt5_A)  ( 3799 1m22_A)     0.7733   0.8775   4.1024 (  14  244  300)   0     0.7733   0.8775   32  28
( 4027 1mt5_A)  ( 4027 1mt5_A)     1.0000   1.0000   0.0000 (   0  433  496)   0     1.0000   1.0000   32  32
( 4027 1mt5_A)  ( 4568 1o9p_A)     0.7154   0.9446   2.7382 (  11  214  253)   0     0.7464   0.9850   32  24

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