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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6348 1xo1_A)  (  382 1bgx_T)     0.4545   0.8332   2.8004 (   0    6   10)   0     0.4545   0.8332   11   6
( 6348 1xo1_A)  ( 4487 1o4w_A)     0.7104   0.7735   3.3849 (   1   13   28)   0     0.7267   0.7991   11  10
( 6348 1xo1_A)  ( 5721 1rxw_A)     0.9088   0.6250   3.2749 (   0   23   45)   0     0.9088   0.6250   11  16
( 6348 1xo1_A)  ( 5904 1tfr  )     0.9065   0.9065   2.5478 (   1   28   45)   0     0.9065   0.9065   11  11
( 6348 1xo1_A)  ( 6198 1v8p_A)     0.4545   0.4545   4.2614 (   0    3   10)   0     0.7138   0.7138   11  11
( 6348 1xo1_A)  ( 6348 1xo1_A)     1.0000   1.0000   0.0000 (   0   37   55)   0     1.0000   1.0000   11  11

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