------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [1132, 794]: Comparing 1ef8_A and 1dci_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 23 (14 H + 9 S) secondary structure elements in 1dci_A, of which 22 satisfy the size requirements. 1.17238 [ 1.22720] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20)) 3.404 {5/116:153} B:0 1.23659 [ 1.29524] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20)) 3.231 {3/100:136} B:0 1.61603 [ 1.69287] ((5 . 5) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20)) 1.751 {2/62:78} B:0 2.34136 [ 2.45144] ((2 . 5) (10 . 10) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20)) 2.526 {2/25:36} B:0 4.20002 [ 4.40002] ((4 . 10) (5 . 11) (6 . 12) (10 . 17) (11 . 18)) 4.620 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.8530 [and 1/min{score2}: 0.8149] [1132, 1132]: Comparing 1ef8_A and 1ef8_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22)) 0.000 {0/168:210} B:0 1.05000 [ 1.05000] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22)) 0.000 {0/151:190} B:0 3.53229 [ 3.53229] ((7 . 7) (8 . 9) (10 . 10) (18 . 18) (19 . 19) (20 . 20)) 5.461 {2/13:15} B:0 3.53229 [ 3.53229] ((7 . 7) (9 . 8) (10 . 10) (18 . 18) (19 . 19) (20 . 20)) 5.461 {2/13:15} B:0 4.20002 [ 4.20002] ((2 . 8) (5 . 11) (6 . 12) (10 . 17) (11 . 18)) 4.601 {0/4:10} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [1132, 1311]: Comparing 1ef8_A and 1ey3_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 24 (14 H + 10 S) secondary structure elements in 1ey3_A, of which 23 satisfy the size requirements. 1.12811 [ 1.22808] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (14 . 16) (15 . 17) (17 . 19) (18 . 20) (19 . 21) (20 . 22)) 2.026 {8/134:171} B:0 1.18701 [ 1.29339] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (15 . 17) (17 . 19) (18 . 20) (19 . 21) (20 . 22)) 1.380 {7/116:153} B:0 1.46840 [ 1.52878] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (15 . 16) (17 . 19) (18 . 20) (19 . 21) (20 . 22)) 2.520 {15/116:153} B:0 4.20002 [ 4.60002] ((2 . 10) (5 . 13) (6 . 14) (10 . 19) (11 . 20)) 4.503 {0/5:10} B:0 4.20002 [ 4.60002] ((4 . 12) (5 . 13) (6 . 14) (10 . 19) (11 . 20)) 4.690 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.8864 [and 1/min{score2}: 0.8143] [1132, 1463]: Comparing 1ef8_A and 1fc6_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 29 (12 H + 17 S) secondary structure elements in 1fc6_A, of which 19 satisfy the size requirements. 2.54587 [ 2.38268] ((1 . 15) (2 . 17) (4 . 18) (5 . 19) (7 . 20) (8 . 23) (10 . 24) (11 . 25) (19 . 29)) 4.684 {3/16:36} B:0 2.63440 [ 2.38766] ((1 . 15) (2 . 17) (4 . 18) (5 . 19) (7 . 20) (8 . 23) (10 . 24) (11 . 25)) 2.671 {1/11:28} B:0 3.01406 [ 2.73321] ((1 . 15) (2 . 17) (4 . 18) (5 . 19) (8 . 23) (10 . 24) (19 . 29)) 4.338 {1/9:21} B:0 3.42196 [ 3.31974] ((2 . 15) (5 . 17) (7 . 18) (8 . 19) (10 . 20) (11 . 23) (17 . 24) (18 . 25)) 4.461 {4/13:28} B:0 3.58982 [ 3.28580] ((1 . 15) (2 . 17) (4 . 18) (5 . 19) (7 . 20) (19 . 29)) 4.741 {1/5:15} B:0 SIMILARITY (1/min{score1}): 0.4278 [and 1/min{score2}: 0.4724] [1132, 2251]: Comparing 1ef8_A and 1hnu_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 21 (12 H + 9 S) secondary structure elements in 1hnu_A, of which 18 satisfy the size requirements. 1.29581 [ 1.18425] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 6) (8 . 7) (10 . 9) (11 . 10) (12 . 11) (13 . 12) (14 . 13) (15 . 14) (17 . 16) (19 . 18) (20 . 19) (21 . 20) (22 . 21)) 4.433 {10/101:153} B:0 1.31551 [ 1.17762] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 6) (8 . 7) (10 . 9) (11 . 10) (12 . 11) (13 . 12) (14 . 13) (15 . 14) (17 . 16) (19 . 18) (20 . 19) (21 . 21)) 5.450 {8/89:136} B:0 1.37357 [ 1.25591] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 6) (8 . 7) (10 . 9) (11 . 10) (12 . 11) (13 . 12) (14 . 13) (15 . 14) (17 . 16) (19 . 18) (20 . 19) (22 . 21)) 3.842 {10/95:136} B:0 1.40021 [ 1.25468] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 6) (8 . 7) (10 . 9) (11 . 10) (12 . 11) (13 . 12) (14 . 13) (15 . 14) (17 . 16) (20 . 19) (21 . 21)) 5.431 {8/83:120} B:0 1.90445 [ 1.83696] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 6) (8 . 7) (10 . 9) (11 . 10) (12 . 11) (14 . 12) (15 . 14) (17 . 16) (20 . 20) (21 . 21)) 5.938 {11/63:105} B:0 SIMILARITY (1/min{score1}): 0.7717 [and 1/min{score2}: 0.8492] [1132, 2344]: Comparing 1ef8_A and 1hzd_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 24 (14 H + 10 S) secondary structure elements in 1hzd_A, of which 24 satisfy the size requirements. 1.29798 [ 1.40456] ((1 . 1) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (14 . 16) (15 . 17) (17 . 19) (18 . 20) (19 . 21) (20 . 22)) 2.858 {14/130:171} B:0 4.20007 [ 4.80005] ((4 . 4) (6 . 6) (9 . 10) (12 . 13) (15 . 16)) 6.121 {0/8:10} B:0 4.56648 [ 5.05800] ((3 . 2) (7 . 5) (10 . 9) (14 . 12) (15 . 22)) 10.817 {2/6:10} B:0 5.25001 [ 6.00000] ((5 . 3) (7 . 5) (8 . 6) (9 . 7)) 3.881 {0/3:6} B:0 5.25035 [ 6.00023] ((14 . 2) (15 . 4) (17 . 5) (22 . 12)) 10.712 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.7704 [and 1/min{score2}: 0.7120] [1132, 2761]: Comparing 1ef8_A and 1j7x_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 24 (12 H + 12 S) secondary structure elements in 1j7x_A, of which 20 satisfy the size requirements. 2.41134 [ 2.31162] ((1 . 8) (2 . 9) (4 . 12) (5 . 13) (7 . 14) (8 . 17) (10 . 18) (11 . 19) (19 . 24)) 3.523 {2/14:36} B:0 2.41137 [ 2.31165] ((1 . 8) (2 . 9) (4 . 10) (5 . 13) (7 . 14) (8 . 17) (10 . 18) (11 . 19) (19 . 24)) 3.975 {2/14:36} B:0 2.76453 [ 2.65903] ((1 . 8) (2 . 9) (5 . 13) (7 . 14) (8 . 17) (10 . 18) (11 . 19) (19 . 24)) 2.294 {2/11:28} B:0 3.58980 [ 3.43647] ((2 . 13) (4 . 14) (8 . 17) (10 . 18) (11 . 19) (19 . 24)) 3.652 {1/5:15} B:0 3.70844 [ 3.57051] ((1 . 8) (2 . 9) (3 . 10) (4 . 12) (5 . 13) (19 . 24)) 4.454 {2/8:15} B:0 SIMILARITY (1/min{score1}): 0.4250 [and 1/min{score2}: 0.4455] [1132, 3149]: Comparing 1ef8_A and 1k32_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 94 (19 H + 75 S) secondary structure elements in 1k32_A, of which 17 satisfy the size requirements. 2.34047 [ 1.90226] ((4 . 79) (5 . 80) (7 . 81) (8 . 82) (10 . 83) (11 . 86) (17 . 87) (18 . 88) (19 . 94)) 5.531 {1/13:36} B:0 2.63872 [ 2.15060] ((2 . 80) (4 . 81) (5 . 82) (7 . 83) (8 . 86) (10 . 87) (11 . 88) (19 . 94)) 2.384 {1/10:28} B:0 3.01402 [ 2.45476] ((2 . 80) (4 . 81) (5 . 82) (8 . 86) (10 . 87) (11 . 88) (19 . 94)) 2.397 {1/9:21} B:0 3.13841 [ 2.66973] ((4 . 79) (8 . 80) (10 . 81) (11 . 82) (17 . 83) (18 . 86) (19 . 94)) 5.548 {1/5:21} B:0 3.54472 [ 2.91561] ((5 . 80) (8 . 82) (11 . 86) (17 . 87) (18 . 91) (20 . 94)) 9.048 {1/6:15} B:0 SIMILARITY (1/min{score1}): 0.4273 [and 1/min{score2}: 0.5257] [1132, 4459]: Comparing 1ef8_A and 1nzy_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 21 (13 H + 8 S) secondary structure elements in 1nzy_A, of which 19 satisfy the size requirements. 1.26191 [ 1.15304] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 16) (19 . 18) (20 . 19)) 3.392 {7/104:136} B:0 4.20005 [ 3.80007] ((2 . 5) (7 . 10) (8 . 11) (9 . 12) (13 . 15)) 5.671 {0/7:10} B:0 4.40900 [ 4.07309] ((6 . 5) (7 . 7) (9 . 8) (12 . 11) (15 . 14)) 8.419 {2/7:10} B:0 4.40913 [ 4.07325] ((2 . 8) (5 . 11) (6 . 12) (10 . 16) (14 . 19)) 9.452 {2/7:10} B:0 5.25003 [ 4.75004] ((10 . 7) (15 . 10) (17 . 13) (22 . 19)) 5.943 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.7924 [and 1/min{score2}: 0.8673] [1132, 4554]: Comparing 1ef8_A and 1o8u_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 22 (12 H + 10 S) secondary structure elements in 1o8u_A, of which 17 satisfy the size requirements. 1.41183 [ 1.22880] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 9) (8 . 10) (10 . 11) (11 . 12) (13 . 14) (14 . 15) (15 . 16) (17 . 18) (18 . 19) (19 . 20) (20 . 21) (21 . 22)) 4.358 {8/80:120} B:0 1.50558 [ 1.31015] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 9) (8 . 10) (10 . 11) (11 . 12) (13 . 14) (14 . 15) (15 . 16) (17 . 18) (18 . 19) (19 . 20) (20 . 21)) 3.403 {8/75:105} B:0 1.56633 [ 1.33018] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 9) (8 . 10) (10 . 11) (11 . 12) (14 . 15) (15 . 16) (17 . 18) (18 . 19) (19 . 20) (20 . 22)) 6.059 {6/61:91} B:0 1.62221 [ 1.32045] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 9) (8 . 10) (10 . 11) (11 . 12) (13 . 16) (17 . 18) (18 . 19) (19 . 20) (20 . 21)) 4.250 {3/52:78} B:0 1.78351 [ 1.58007] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 9) (8 . 10) (11 . 12) (14 . 14) (15 . 16) (17 . 18) (18 . 19) (19 . 20) (20 . 22)) 6.366 {7/52:78} B:0 SIMILARITY (1/min{score1}): 0.7083 [and 1/min{score2}: 0.8138] [1132, 4722]: Comparing 1ef8_A and 1on3_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 42 (26 H + 16 S) secondary structure elements in 1on3_A, of which 19 satisfy the size requirements. 1.64120 [ 1.49601] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (5 . 10) (7 . 11) (8 . 12) (10 . 13) (11 . 14) (12 . 15) (17 . 18) (18 . 19) (19 . 20)) 3.311 {4/49:78} B:0 2.62863 [ 2.37989] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (5 . 10) (7 . 11) (10 . 13) (11 . 14)) 3.608 {1/14:28} B:0 2.65110 [ 2.40999] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (7 . 11) (10 . 13) (11 . 14) (12 . 15)) 2.803 {2/17:28} B:0 3.45756 [ 3.41808] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (5 . 10) (7 . 11) (8 . 12) (10 . 13) (11 . 15) (19 . 20)) 5.088 {7/21:45} B:0 3.52408 [ 3.19902] ((5 . 7) (7 . 9) (8 . 10) (10 . 11) (18 . 19) (19 . 20)) 4.803 {1/7:15} B:0 SIMILARITY (1/min{score1}): 0.6158 [and 1/min{score2}: 0.6790] [1132, 4723]: Comparing 1ef8_A and 1on3_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 42 (26 H + 16 S) secondary structure elements in 1on3_A, of which 18 satisfy the size requirements. 1.93633 [ 1.67887] ((1 . 25) (2 . 26) (4 . 28) (5 . 29) (7 . 31) (8 . 32) (10 . 33) (11 . 35) (12 . 36) (17 . 40) (19 . 42)) 3.410 {3/32:55} B:0 3.24340 [ 3.13846] ((1 . 25) (2 . 26) (4 . 28) (5 . 29) (7 . 31) (8 . 32) (11 . 36) (17 . 37) (19 . 40)) 6.075 {6/20:36} B:0 4.20012 [ 3.60019] ((5 . 26) (7 . 28) (8 . 29) (10 . 31) (14 . 33)) 6.953 {0/2:10} B:0 4.21401 [ 3.62215] ((4 . 28) (6 . 29) (7 . 31) (17 . 40) (19 . 42)) 4.766 {1/7:10} B:0 4.84341 [ 4.82360] ((1 . 26) (2 . 29) (4 . 31) (5 . 32) (7 . 33) (8 . 35) (9 . 36) (13 . 39) (17 . 40) (19 . 42)) 5.817 {12/25:45} B:0 SIMILARITY (1/min{score1}): 0.5164 [and 1/min{score2}: 0.5956] [1132, 5023]: Comparing 1ef8_A and 1pix_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 49 (25 H + 24 S) secondary structure elements in 1pix_A, of which 37 satisfy the size requirements. 1.61705 [ 2.84646] ((1 . 6) (2 . 7) (4 . 9) (5 . 10) (7 . 13) (8 . 14) (9 . 15) (10 . 16) (11 . 17) (12 . 18) (17 . 20) (18 . 21) (19 . 22)) 2.154 {2/49:78} B:0 1.75183 [ 3.08367] ((1 . 6) (2 . 7) (4 . 9) (5 . 10) (7 . 13) (8 . 14) (9 . 15) (10 . 16) (11 . 17) (12 . 18) (18 . 21) (19 . 22)) 2.141 {2/45:66} B:0 1.97564 [ 3.13211] ((1 . 28) (2 . 29) (4 . 33) (5 . 34) (7 . 37) (8 . 38) (9 . 39) (10 . 40) (11 . 41) (12 . 42) (17 . 45) (19 . 47)) 2.531 {7/45:66} B:0 1.99335 [ 2.93889] ((1 . 28) (2 . 29) (4 . 33) (5 . 34) (7 . 37) (8 . 38) (9 . 39) (10 . 40) (11 . 41) (12 . 42) (13 . 43) (17 . 45) (19 . 47)) 4.379 {9/52:78} B:0 4.20001 [ 7.40000] ((8 . 7) (10 . 9) (11 . 10) (17 . 16) (18 . 17)) 3.725 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6184 [and 1/min{score2}: 0.3513] [1132, 5210]: Comparing 1ef8_A and 1q52_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 24 (13 H + 11 S) secondary structure elements in 1q52_A, of which 22 satisfy the size requirements. 1.14019 [ 1.18851] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (14 . 16) (15 . 17) (17 . 19) (18 . 20) (19 . 21) (20 . 22)) 1.997 {9/135:171} B:0 1.72657 [ 1.74925] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 17) (15 . 19) (18 . 20) (19 . 21) (20 . 22)) 4.138 {16/100:136} B:0 3.53231 [ 3.69483] ((7 . 9) (9 . 10) (10 . 12) (18 . 20) (19 . 21) (20 . 22)) 5.747 {2/13:15} B:0 4.20002 [ 4.40002] ((8 . 4) (11 . 7) (12 . 8) (17 . 12) (18 . 13)) 4.481 {0/4:10} B:0 4.20002 [ 4.40002] ((5 . 4) (7 . 6) (8 . 7) (9 . 8) (10 . 9)) 4.640 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.8770 [and 1/min{score2}: 0.8414] [1132, 5939]: Comparing 1ef8_A and 1tyf_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 16 (7 H + 9 S) secondary structure elements in 1tyf_A, of which 14 satisfy the size requirements. 1.93073 [ 1.34126] ((2 . 2) (4 . 3) (5 . 4) (7 . 5) (8 . 6) (10 . 7) (11 . 8) (12 . 9) (14 . 12) (15 . 13) (17 . 15)) 4.507 {3/34:55} B:0 2.62599 [ 1.75335] ((2 . 2) (4 . 3) (5 . 4) (8 . 6) (12 . 9) (14 . 12) (15 . 13) (17 . 15)) 4.996 {1/20:28} B:0 3.19723 [ 2.99729] ((2 . 2) (4 . 3) (5 . 4) (7 . 5) (8 . 6) (10 . 7) (11 . 8) (14 . 12) (17 . 13)) 6.085 {5/17:36} B:0 3.50012 [ 2.33373] ((2 . 2) (4 . 3) (7 . 5) (8 . 6) (10 . 7) (12 . 10)) 6.015 {0/5:15} B:0 3.51420 [ 2.38014] ((2 . 2) (4 . 3) (5 . 4) (7 . 7) (8 . 8) (9 . 9)) 4.980 {1/8:15} B:0 SIMILARITY (1/min{score1}): 0.5179 [and 1/min{score2}: 0.7456] [1132, 6030]: Comparing 1ef8_A and 1uiy_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 22 (13 H + 9 S) secondary structure elements in 1uiy_A, of which 20 satisfy the size requirements. 1.61545 [ 1.53854] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20)) 1.801 {1/57:78} B:0 1.75008 [ 1.66676] ((4 . 4) (5 . 5) (8 . 8) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20)) 1.475 {1/50:66} B:0 4.08622 [ 4.03255] ((2 . 1) (6 . 5) (9 . 8) (12 . 11) (14 . 14) (15 . 17) (17 . 20)) 7.216 {6/16:21} B:0 4.20515 [ 4.00596] ((2 . 5) (7 . 10) (8 . 11) (9 . 12) (14 . 14)) 4.094 {1/9:10} B:0 4.40900 [ 4.23843] ((6 . 5) (7 . 7) (9 . 8) (12 . 11) (15 . 14)) 8.441 {2/7:10} B:0 SIMILARITY (1/min{score1}): 0.6344 [and 1/min{score2}: 0.6500] [1132, 6144]: Comparing 1ef8_A and 1uyr_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 57 (30 H + 27 S) secondary structure elements in 1uyr_A, of which 23 satisfy the size requirements. 1.78124 [ 1.94063] ((1 . 7) (2 . 8) (4 . 10) (5 . 11) (7 . 20) (8 . 21) (10 . 23) (11 . 24) (15 . 27) (17 . 28) (18 . 29) (19 . 30)) 4.203 {3/33:66} B:0 1.88836 [ 2.02551] ((1 . 7) (2 . 8) (4 . 10) (5 . 11) (7 . 20) (8 . 21) (10 . 23) (11 . 24) (13 . 26) (17 . 28) (18 . 29) (19 . 30)) 3.362 {5/37:66} B:0 1.90956 [ 2.09126] ((1 . 7) (2 . 8) (4 . 10) (5 . 11) (7 . 20) (8 . 21) (10 . 23) (11 . 24) (17 . 27) (18 . 29) (19 . 30)) 3.423 {1/31:55} B:0 1.90956 [ 2.09126] ((1 . 7) (2 . 8) (4 . 10) (5 . 11) (7 . 20) (8 . 21) (10 . 23) (11 . 24) (17 . 28) (18 . 29) (19 . 30)) 2.510 {1/30:55} B:0 3.50896 [ 3.84016] ((7 . 20) (9 . 21) (10 . 23) (17 . 28) (18 . 29) (19 . 30)) 5.825 {1/9:15} B:0 SIMILARITY (1/min{score1}): 0.5614 [and 1/min{score2}: 0.5153] [1132, 6145]: Comparing 1ef8_A and 1uyr_A, based on their crossing files. There are 22 (12 H + 10 S) secondary structure elements in 1ef8_A, of which 21 satisfy the size requirements. There are 57 (30 H + 27 S) secondary structure elements in 1uyr_A, of which 27 satisfy the size requirements. 1.84661 [ 2.20000] ((1 . 35) (2 . 36) (4 . 39) (5 . 40) (7 . 41) (8 . 42) (9 . 43) (10 . 44) (11 . 46) (12 . 47) (17 . 51) (18 . 52) (19 . 53)) 3.108 {8/54:78} B:0 2.65128 [ 3.38748] ((4 . 39) (5 . 40) (7 . 41) (10 . 45) (11 . 46) (17 . 51) (18 . 52) (19 . 53)) 5.520 {2/17:28} B:0 3.02893 [ 3.87088] ((4 . 39) (5 . 40) (7 . 41) (10 . 45) (11 . 46) (12 . 47) (18 . 52)) 5.032 {2/15:21} B:0 4.06705 [ 4.80623] ((2 . 36) (5 . 40) (8 . 46) (10 . 53) (14 . 55) (22 . 56)) 8.594 {3/9:15} B:0 4.11135 [ 4.28482] ((1 . 35) (2 . 36) (4 . 39) (5 . 42) (7 . 44) (8 . 46) (10 . 48) (13 . 49) (19 . 53)) 8.433 {6/15:36} B:0 SIMILARITY (1/min{score1}): 0.5818 [and 1/min{score2}: 0.4698] -------------------------------------------------------------------------------------------------------------------------