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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5939 1tyf_A)  (  794 1dci_A)     0.5682   0.4787   6.1997 (   7   42   66)   0     0.6745   0.4841   14  22
( 5939 1tyf_A)  ( 1132 1ef8_A)     0.7456   0.5179   4.5070 (   3   34   55)   0     0.7456   0.5179   14  21
( 5939 1tyf_A)  ( 1311 1ey3_A)     0.6192   0.4552   5.3605 (   5   35   55)   0     0.6192   0.4552   14  23
( 5939 1tyf_A)  ( 1463 1fc6_A)     0.6342   0.4718   8.0670 (   1   14   36)   0     0.6414   0.4734   14  19
( 5939 1tyf_A)  ( 2251 1hnu_A)     0.4886   0.3855   5.7363 (   1    9   21)   0     0.5209   0.4279   14  18
( 5939 1tyf_A)  ( 2344 1hzd_A)     0.8551   0.4999   5.5546 (   1   41   66)   0     0.8551   0.4999   14  24
( 5939 1tyf_A)  ( 2761 1j7x_A)     0.5000   0.3500   3.4467 (   0    5   21)   0     0.5000   0.3500   14  20
( 5939 1tyf_A)  ( 3149 1k32_A)     0.6423   0.5292   5.9023 (   0   11   36)   0     0.6423   0.5292   14  17
( 5939 1tyf_A)  ( 4459 1nzy_A)     0.5714   0.4210   4.1972 (   0   14   28)   0     0.6363   0.4722   14  19
( 5939 1tyf_A)  ( 4554 1o8u_A)     0.4250   0.3516   3.6740 (   1   10   15)   0     0.6380   0.5276   14  17
( 5939 1tyf_A)  ( 4722 1on3_A)     0.6407   0.4732   2.9621 (   1   19   36)   0     0.6407   0.4732   14  19
( 5939 1tyf_A)  ( 4723 1on3_A)     0.6407   0.4994   2.7928 (   1   19   36)   0     0.6407   0.4994   14  18
( 5939 1tyf_A)  ( 5023 1pix_A)     0.5714   0.2162   2.8458 (   0   16   28)   0     0.6963   0.2701   14  37
( 5939 1tyf_A)  ( 5210 1q52_A)     0.7849   0.4999   5.1181 (   0   35   55)   0     0.7849   0.4999   14  22
( 5939 1tyf_A)  ( 5939 1tyf_A)     1.0000   1.0000   0.0000 (   0   68   91)   0     1.0000   1.0000   14  14
( 5939 1tyf_A)  ( 6030 1uiy_A)     0.7812   0.5848   5.0284 (   4   42   66)   0     0.7812   0.5848   14  20
( 5939 1tyf_A)  ( 6144 1uyr_A)     0.5714   0.3478   3.2486 (   0    8   28)   0     0.5714   0.3478   14  23
( 5939 1tyf_A)  ( 6145 1uyr_A)     0.6407   0.3333   3.3640 (   1   19   36)   0     0.6407   0.3661   14  27

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