-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
(  614 1cjy_A)  (  614 1cjy_A)     1.0000   1.0000   0.0000 (   0  482  561)   0     1.0000   1.0000   34  34
(  614 1cjy_A)  ( 3972 1mla  )     0.1764   0.6482   7.9652 (   1    8   15)   0     0.1931   0.6482   34   8
(  614 1cjy_A)  ( 4308 1nm2_A)     0.1450   0.2644  10.5919 (   2    6   10)   0     0.2738   0.5143   34  15
(  614 1cjy_A)  ( 4819 1oxw_A)     0.4697   0.7525   5.3905 (   5   82  120)   0     0.4699   0.7540   34  21

-------------------------------------------------------------------------------------------------------------------------