------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1899 1gpj_A) ( 42 1a4i_A) 0.5723 0.6739 3.2764 ( 1 11 21) 0 0.7078 0.8078 12 10 ( 1899 1gpj_A) ( 265 1b16_A) 0.5833 0.4375 3.4601 ( 0 5 21) 0 0.9147 0.6870 12 16 ( 1899 1gpj_A) ( 312 1b7g_O) 0.5000 0.4615 4.1768 ( 0 6 15) 0 0.9116 0.8428 12 13 ( 1899 1gpj_A) ( 319 1b8p_A) 0.8308 0.9052 4.5055 ( 1 27 45) 0 0.8323 0.9075 12 11 ( 1899 1gpj_A) ( 352 1bdb ) 0.5000 0.3333 2.7135 ( 0 4 15) 0 0.9155 0.6110 12 18 ( 1899 1gpj_A) ( 377 1bg6 ) 0.8328 0.5555 4.3811 ( 0 28 45) 0 0.8328 0.5555 12 18 ( 1899 1gpj_A) ( 506 1c1d_A) 0.6908 0.6908 3.7087 ( 2 19 36) 0 0.7457 0.7457 12 12 ( 1899 1gpj_A) ( 707 1cyd_A) 0.5000 0.3333 3.0221 ( 0 2 15) 0 0.9156 0.6110 12 18 ( 1899 1gpj_A) ( 781 1db3_A) 0.4998 0.2727 6.2401 ( 0 4 15) 0 0.8329 0.4545 12 22 ( 1899 1gpj_A) ( 847 1dih ) 0.5000 0.8568 3.8072 ( 0 3 15) 0 0.5831 0.9968 12 7 ( 1899 1gpj_A) ( 873 1dlj_A) 0.5833 0.4375 3.6451 ( 0 9 21) 0 0.9150 0.6871 12 16 ( 1899 1gpj_A) ( 906 1dpg_A) 0.5832 0.5383 5.0524 ( 0 9 21) 0 0.8917 0.8291 12 13 ( 1899 1gpj_A) ( 972 1dxy ) 0.8290 0.6240 3.1379 ( 1 22 45) 0 0.8290 0.6240 12 16 ( 1899 1gpj_A) ( 1053 1e6u_A) 0.4999 0.2727 5.4305 ( 0 4 15) 0 0.8296 0.4544 12 22 ( 1899 1gpj_A) ( 1071 1e7w_A) 0.4999 0.3529 5.6608 ( 0 0 15) 0 0.9152 0.6468 12 17 ( 1899 1gpj_A) ( 1094 1ebf_A) 0.5000 0.5000 3.7407 ( 0 6 15) 0 0.7347 0.7347 12 12 ( 1899 1gpj_A) ( 1117 1edz_A) 0.7139 0.7139 3.9160 ( 3 26 45) 0 0.7139 0.7139 12 12 ( 1899 1gpj_A) ( 1189 1ek6_A) 0.5833 0.3182 4.1985 ( 0 9 21) 0 0.9124 0.4998 12 22 ( 1899 1gpj_A) ( 1219 1enp ) 0.5000 0.3333 4.2486 ( 0 5 15) 0 0.9123 0.6105 12 18 ( 1899 1gpj_A) ( 1221 1eny ) 0.5000 0.3529 2.7489 ( 0 7 15) 0 0.8897 0.6421 12 17 ( 1899 1gpj_A) ( 1242 1eq2_A) 0.4995 0.2727 8.1547 ( 0 5 15) 0 0.8323 0.4902 12 22 ( 1899 1gpj_A) ( 1355 1f14_A) 0.5833 0.4667 3.6340 ( 0 12 21) 0 0.8084 0.6581 12 15 ( 1899 1gpj_A) ( 1436 1f8f_A) 0.8266 0.7112 4.3647 ( 1 20 45) 0 0.8330 0.7141 12 14 ( 1899 1gpj_A) ( 1487 1ff9_A) 0.5833 0.4667 3.3618 ( 0 10 21) 0 0.9120 0.7318 12 15 ( 1899 1gpj_A) ( 1531 1fjh_A) 0.4997 0.3749 7.1362 ( 0 3 15) 0 0.8320 0.6247 12 16 ( 1899 1gpj_A) ( 1560 1fmc_A) 0.6648 0.4703 7.8583 ( 0 10 28) 0 0.9152 0.6468 12 17 ( 1899 1gpj_A) ( 1804 1gdh_A) 0.8829 0.7694 3.7077 ( 2 29 55) 0 0.8829 0.7694 12 14 ( 1899 1gpj_A) ( 1807 1gee_A) 0.5000 0.3000 2.9618 ( 0 5 15) 0 0.9152 0.5499 12 20 ( 1899 1gpj_A) ( 1809 1geg_A) 0.5829 0.4117 6.5477 ( 0 7 21) 0 0.9126 0.6463 12 17 ( 1899 1gpj_A) ( 1899 1gpj_A) 1.0000 1.0000 0.0000 ( 0 47 66) 0 1.0000 1.0000 12 12 ( 1899 1gpj_A) ( 1922 1gr0_A) 0.4167 0.3571 3.6370 ( 0 4 10) 0 0.8285 0.7121 12 14 ( 1899 1gpj_A) ( 1948 1gtm_A) 0.6217 0.5659 4.6827 ( 5 33 55) 0 0.8277 0.6237 12 16 ( 1899 1gpj_A) ( 1956 1gu7_A) 0.5832 0.4117 4.9152 ( 0 8 21) 0 0.8197 0.6262 12 17 ( 1899 1gpj_A) ( 2004 1gy8_A) 0.5000 0.2609 4.0996 ( 0 6 15) 0 0.9117 0.4781 12 23 ( 1899 1gpj_A) ( 2016 1gz3_A) 0.8784 0.6398 3.7215 ( 2 28 55) 0 0.9108 0.6460 12 17 ( 1899 1gpj_A) ( 2017 1gz6_A) 0.4167 0.2500 3.6906 ( 0 3 10) 0 0.9119 0.5496 12 20 ( 1899 1gpj_A) ( 2046 1h2b_A) 0.8268 0.7112 4.0708 ( 1 20 45) 0 0.8331 0.7142 12 14 ( 1899 1gpj_A) ( 2090 1h5q_A) 0.5000 0.3000 2.9853 ( 0 5 15) 0 0.9150 0.5499 12 20 ( 1899 1gpj_A) ( 2095 1h6d_A) 0.4166 0.3571 5.1721 ( 0 5 10) 0 0.9129 0.7840 12 14 ( 1899 1gpj_A) ( 2180 1hdc_A) 0.5828 0.4117 6.6981 ( 0 6 21) 0 0.9156 0.6469 12 17 ( 1899 1gpj_A) ( 2189 1hdo_A) 0.5287 0.4461 3.1614 ( 1 7 21) 0 0.8328 0.6665 12 15 ( 1899 1gpj_A) ( 2194 1het_A) 0.8286 0.6651 4.2151 ( 1 22 45) 0 0.8329 0.6822 12 15 ( 1899 1gpj_A) ( 2270 1hrd_A) 0.7756 0.6096 4.5312 ( 2 22 45) 0 0.8116 0.6571 12 16 ( 1899 1gpj_A) ( 2309 1hwx_A) 0.7834 0.5784 5.0121 ( 2 23 45) 0 0.7887 0.5796 12 17 ( 1899 1gpj_A) ( 2316 1hxh_A) 0.6649 0.4996 7.7146 ( 0 8 28) 0 0.9116 0.6863 12 16 ( 1899 1gpj_A) ( 2328 1hye_A) 0.8307 0.9050 5.0983 ( 1 28 45) 0 0.8319 0.9068 12 11 ( 1899 1gpj_A) ( 2330 1hyh_A) 0.8324 0.9077 4.9133 ( 0 28 45) 0 0.8324 0.9077 12 11 ( 1899 1gpj_A) ( 2368 1i24_A) 0.5000 0.2222 3.1851 ( 0 7 15) 0 0.9140 0.4074 12 27 ( 1899 1gpj_A) ( 2376 1i36_A) 0.5832 0.4666 4.5949 ( 0 10 21) 0 0.9123 0.7319 12 15 ( 1899 1gpj_A) ( 2463 1id1_A) 0.8308 0.7675 3.8825 ( 1 26 45) 0 0.8332 0.7782 12 13 ( 1899 1gpj_A) ( 2615 1iuk_A) 0.6583 0.6583 3.6836 ( 1 14 28) 0 0.8287 0.8287 12 12 ( 1899 1gpj_A) ( 2657 1iy8_A) 0.5831 0.4117 5.4859 ( 0 8 21) 0 0.9156 0.6469 12 17 ( 1899 1gpj_A) ( 2674 1iz0_A) 0.8954 0.7261 4.1096 ( 2 33 55) 0 0.9048 0.7641 12 15 ( 1899 1gpj_A) ( 2725 1j3v_A) 0.8330 0.7141 3.7223 ( 0 25 45) 0 0.8330 0.7141 12 14 ( 1899 1gpj_A) ( 2736 1j5p_A) 0.5833 0.6999 3.8838 ( 0 8 21) 0 0.7495 0.8986 12 10 ( 1899 1gpj_A) ( 2781 1ja9_A) 0.5000 0.3529 4.0601 ( 0 2 15) 0 0.9150 0.6468 12 17 ( 1899 1gpj_A) ( 2789 1jax_A) 0.4166 0.2500 4.6088 ( 0 4 10) 0 0.8297 0.4997 12 20 ( 1899 1gpj_A) ( 3017 1jqb_A) 0.7838 0.6489 4.2344 ( 2 23 45) 0 0.8330 0.6666 12 15 ( 1899 1gpj_A) ( 3059 1jtv_A) 0.5000 0.3333 3.6108 ( 0 7 15) 0 0.9122 0.6105 12 18 ( 1899 1gpj_A) ( 3072 1jvb_A) 0.7470 0.6903 4.8221 ( 1 22 36) 0 0.7663 0.7219 12 13 ( 1899 1gpj_A) ( 3144 1k2w_A) 0.5000 0.3529 2.4278 ( 0 6 15) 0 0.9154 0.6468 12 17 ( 1899 1gpj_A) ( 3192 1k6j_A) 0.5000 0.2500 3.4852 ( 0 6 15) 0 0.9156 0.4583 12 24 ( 1899 1gpj_A) ( 3257 1kbz_A) 0.4167 0.2632 2.8563 ( 0 3 10) 0 0.8318 0.5262 12 19 ( 1899 1gpj_A) ( 3385 1kol_A) 0.7498 0.5625 3.7694 ( 0 19 36) 0 0.8327 0.6248 12 16 ( 1899 1gpj_A) ( 3414 1ks9_A) 0.4165 0.2941 7.5834 ( 0 5 10) 0 0.6372 0.4650 12 17 ( 1899 1gpj_A) ( 3481 1kyq_A) 0.4167 0.5000 2.9656 ( 0 1 10) 0 0.6664 0.7994 12 10 ( 1899 1gpj_A) ( 3561 1l7d_A) 0.9162 0.7332 3.6820 ( 0 31 55) 0 0.9162 0.7332 12 15 ( 1899 1gpj_A) ( 3593 1lc0_A) 0.4165 0.4165 7.9239 ( 0 1 10) 0 0.8327 0.8327 12 12 ( 1899 1gpj_A) ( 3606 1ldn_A) 0.9008 0.9008 4.6246 ( 2 36 55) 0 0.9008 0.9008 12 12 ( 1899 1gpj_A) ( 3610 1leh_A) 0.8297 0.7668 4.4800 ( 1 24 45) 0 0.8297 0.7668 12 13 ( 1899 1gpj_A) ( 3633 1li4_A) 0.8332 0.7691 3.1063 ( 0 22 45) 0 0.8332 0.7691 12 13 ( 1899 1gpj_A) ( 3637 1lj8_A) 0.4167 0.2500 3.4667 ( 0 5 10) 0 0.8313 0.4998 12 20 ( 1899 1gpj_A) ( 3677 1lnq_A) 0.8301 0.5551 4.5548 ( 1 25 45) 0 0.8888 0.6072 12 18 ( 1899 1gpj_A) ( 3722 1lss_A) 0.7493 0.7493 5.1989 ( 0 17 36) 0 0.8331 0.8331 12 12 ( 1899 1gpj_A) ( 3724 1lsu_A) 0.7907 0.7907 3.3056 ( 2 24 45) 0 0.8332 0.8332 12 12 ( 1899 1gpj_A) ( 3734 1lu9_A) 0.7368 0.6634 3.5763 ( 3 28 45) 0 0.8292 0.7364 12 14 ( 1899 1gpj_A) ( 3854 1m66_A) 0.5000 0.3750 2.9625 ( 0 9 15) 0 0.8276 0.6287 12 16 ( 1899 1gpj_A) ( 4047 1mv8_A) 0.5832 0.4117 4.4331 ( 0 12 21) 0 0.8330 0.5882 12 17 ( 1899 1gpj_A) ( 4067 1mx3_A) 0.7908 0.6934 3.2762 ( 2 24 45) 0 0.8325 0.7176 12 14 ( 1899 1gpj_A) ( 4131 1n5d_A) 0.5000 0.3529 3.6033 ( 0 5 15) 0 0.9118 0.6462 12 17 ( 1899 1gpj_A) ( 4341 1np3_A) 0.7499 0.5294 3.0271 ( 0 20 36) 0 0.7499 0.5294 12 17 ( 1899 1gpj_A) ( 4351 1npy_A) 0.6836 0.6650 3.0008 ( 4 30 55) 0 0.8868 0.8257 12 13 ( 1899 1gpj_A) ( 4404 1nvm_B) 0.5830 0.5830 6.1478 ( 0 11 21) 0 0.9131 0.9131 12 12 ( 1899 1gpj_A) ( 4409 1nvt_A) 0.8316 0.8316 2.9533 ( 1 28 45) 0 0.8316 0.8316 12 12 ( 1899 1gpj_A) ( 4417 1nwc_A) 0.4999 0.5454 4.5438 ( 0 9 15) 0 0.8303 0.9044 12 11 ( 1899 1gpj_A) ( 4430 1nxq_A) 0.4999 0.3333 5.0740 ( 0 3 15) 0 0.8866 0.6069 12 18 ( 1899 1gpj_A) ( 4447 1nyt_A) 0.8958 0.8319 3.2976 ( 2 33 55) 0 0.8958 0.8319 12 13 ( 1899 1gpj_A) ( 4499 1o5i_A) 0.4166 0.2941 4.3737 ( 0 1 10) 0 0.9156 0.6469 12 17 ( 1899 1gpj_A) ( 4520 1o6z_A) 0.8326 0.9079 4.7422 ( 0 28 45) 0 0.8326 0.9079 12 11 ( 1899 1gpj_A) ( 4549 1o89_A) 0.7499 0.6922 3.4277 ( 0 17 36) 0 0.8192 0.7597 12 13 ( 1899 1gpj_A) ( 4573 1oaa ) 0.5000 0.3750 4.3524 ( 0 2 15) 0 0.9155 0.6872 12 16 ( 1899 1gpj_A) ( 4585 1obb_A) 0.8331 0.7691 3.6039 ( 0 26 45) 0 0.8331 0.7691 12 13 ( 1899 1gpj_A) ( 4588 1obf_O) 0.5000 0.5000 3.6051 ( 0 9 15) 0 0.7499 0.7499 12 12 ( 1899 1gpj_A) ( 4668 1oi7_A) 0.7409 0.8780 4.4598 ( 1 16 36) 0 0.7498 0.8996 12 10 ( 1899 1gpj_A) ( 4730 1ono_A) 0.5000 0.5000 4.3485 ( 0 6 15) 0 0.8279 0.8279 12 12 ( 1899 1gpj_A) ( 4739 1ooe_A) 0.6645 0.5704 8.0904 ( 0 10 28) 0 0.8315 0.7134 12 14 ( 1899 1gpj_A) ( 4765 1orr_A) 0.5000 0.2308 3.0991 ( 0 4 15) 0 0.9105 0.4229 12 26 ( 1899 1gpj_A) ( 4863 1p1j_A) 0.4163 0.2000 9.4963 ( 0 4 10) 0 0.7896 0.4058 12 25 ( 1899 1gpj_A) ( 4943 1p9l_A) 0.4999 0.5453 5.4233 ( 0 5 15) 0 0.8329 0.9085 12 11 ( 1899 1gpj_A) ( 5029 1pjq_A) 0.5286 0.5886 3.5453 ( 1 7 21) 0 0.6666 0.7999 12 10 ( 1899 1gpj_A) ( 5045 1pl7_A) 0.7496 0.6921 4.5056 ( 0 20 36) 0 0.8324 0.7686 12 13 ( 1899 1gpj_A) ( 5082 1pqw_A) 0.9724 0.7431 5.3027 ( 2 35 66) 0 0.9724 0.7431 12 16 ( 1899 1gpj_A) ( 5097 1psd_A) 0.8332 0.8332 3.1534 ( 0 20 45) 0 0.8332 0.8332 12 12 ( 1899 1gpj_A) ( 5140 1px0_A) 0.4167 0.3125 2.4360 ( 0 3 10) 0 0.8898 0.6808 12 16 ( 1899 1gpj_A) ( 5227 1q7c_A) 0.4999 0.3333 5.1026 ( 0 3 15) 0 0.9154 0.6109 12 18 ( 1899 1gpj_A) ( 5362 1qki_A) 0.5832 0.5832 4.6580 ( 0 10 21) 0 0.8328 0.8328 12 12 ( 1899 1gpj_A) ( 5387 1qmg_A) 0.7499 0.4737 2.9215 ( 0 20 36) 0 0.8043 0.5232 12 19 ( 1899 1gpj_A) ( 5406 1qor_A) 0.9125 0.8434 5.8917 ( 1 34 55) 0 0.9141 0.8444 12 13 ( 1899 1gpj_A) ( 5409 1qp8_A) 0.7430 0.6876 2.6848 ( 1 17 36) 0 0.8141 0.7561 12 13 ( 1899 1gpj_A) ( 5444 1qsg_A) 0.5000 0.3333 2.9904 ( 0 5 15) 0 0.8780 0.6056 12 18 ( 1899 1gpj_A) ( 5493 1qyc_A) 0.5000 0.2500 3.4953 ( 0 5 15) 0 0.9152 0.4583 12 24 ( 1899 1gpj_A) ( 5571 1r6d_A) 0.5000 0.2500 3.8670 ( 0 5 15) 0 0.9124 0.4582 12 24 ( 1899 1gpj_A) ( 5654 1rjw_A) 0.7963 0.6537 3.8945 ( 2 25 45) 0 0.8330 0.6666 12 15 ( 1899 1gpj_A) ( 5665 1rkx_A) 0.4995 0.2857 7.9009 ( 0 6 15) 0 0.8859 0.5218 12 21 ( 1899 1gpj_A) ( 5786 1say_A) 0.8330 0.8330 3.8262 ( 0 24 45) 0 0.8330 0.8330 12 12 ( 1899 1gpj_A) ( 5838 1spx_A) 0.5000 0.3529 4.1622 ( 0 3 15) 0 0.9151 0.6468 12 17 ( 1899 1gpj_A) ( 5877 1t2d_A) 0.8326 0.9079 4.7027 ( 0 26 45) 0 0.8326 0.9079 12 11 ( 1899 1gpj_A) ( 5942 1u8x_X) 0.8298 0.8298 5.0874 ( 1 25 45) 0 0.8315 0.8315 12 12 ( 1899 1gpj_A) ( 5954 1uay_A) 0.5824 0.4373 7.7763 ( 0 4 21) 0 0.8325 0.6248 12 16 ( 1899 1gpj_A) ( 6085 1ur5_A) 0.8327 0.8327 4.4831 ( 0 28 45) 0 0.8327 0.8327 12 12 ( 1899 1gpj_A) ( 6114 1uuf_A) 0.8310 0.7132 3.2370 ( 1 26 45) 0 0.8310 0.7132 12 14 ( 1899 1gpj_A) ( 6257 1vi2_A) 0.9000 0.8349 2.9345 ( 2 35 55) 0 0.9000 0.8349 12 13 ( 1899 1gpj_A) ( 6274 1vj0_A) 0.8298 0.6242 4.2402 ( 1 24 45) 0 0.8853 0.6796 12 16 ( 1899 1gpj_A) ( 6276 1vj1_A) 0.8299 0.7127 4.1060 ( 1 24 45) 0 0.8316 0.7135 12 14 ( 1899 1gpj_A) ( 6292 1vjp_A) 0.4167 0.3571 3.1988 ( 0 1 10) 0 0.8299 0.7127 12 14 ( 1899 1gpj_A) ( 6341 1xcb_A) 0.6040 0.7337 5.0382 ( 2 16 28) 0 0.6150 0.8743 12 8 ( 1899 1gpj_A) ( 6388 2ae1 ) 0.5000 0.3529 3.7656 ( 0 2 15) 0 0.9154 0.6468 12 17 ( 1899 1gpj_A) ( 6420 2cmd ) 0.8329 0.8329 4.0388 ( 0 27 45) 0 0.8329 0.8329 12 12 ( 1899 1gpj_A) ( 6426 2dap ) 0.7494 0.8986 4.9947 ( 0 14 36) 0 0.7498 0.8995 12 10 ( 1899 1gpj_A) ( 6497 2nac_A) 0.8670 0.8116 3.8758 ( 2 26 55) 0 0.8670 0.8116 12 13 ( 1899 1gpj_A) ( 6505 2pgd ) 0.4999 0.4285 5.7483 ( 0 6 15) 0 0.8295 0.7125 12 14 ( 1899 1gpj_A) ( 6627 6ldh ) 0.8310 0.7677 3.0184 ( 1 26 45) 0 0.8332 0.7691 12 13 -------------------------------------------------------------------------------------------------------------------------