------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3593 1lc0_A) ( 42 1a4i_A) 0.4166 0.4999 4.6668 ( 0 2 10) 0 0.6666 0.7998 12 10 ( 3593 1lc0_A) ( 265 1b16_A) 0.8234 0.6226 4.5364 ( 1 18 45) 0 0.9133 0.6867 12 16 ( 3593 1lc0_A) ( 312 1b7g_O) 0.8286 0.7661 5.2479 ( 1 23 45) 0 0.8286 0.7661 12 13 ( 3593 1lc0_A) ( 319 1b8p_A) 0.7304 0.7887 3.7549 ( 1 13 36) 0 0.7304 0.7887 12 11 ( 3593 1lc0_A) ( 352 1bdb ) 0.8253 0.5545 4.2451 ( 1 19 45) 0 0.9131 0.6106 12 18 ( 3593 1lc0_A) ( 377 1bg6 ) 0.4999 0.3333 5.0206 ( 0 6 15) 0 0.7490 0.4999 12 18 ( 3593 1lc0_A) ( 506 1c1d_A) 0.4165 0.4165 7.3721 ( 0 2 10) 0 0.6659 0.6659 12 12 ( 3593 1lc0_A) ( 707 1cyd_A) 0.7486 0.4998 6.2687 ( 0 18 36) 0 0.9809 0.6641 12 18 ( 3593 1lc0_A) ( 781 1db3_A) 0.8267 0.4542 4.2370 ( 1 20 45) 0 0.9033 0.4993 12 22 ( 3593 1lc0_A) ( 847 1dih ) 0.5833 0.9999 2.3220 ( 0 8 21) 0 0.5833 0.9999 12 7 ( 3593 1lc0_A) ( 873 1dlj_A) 0.5000 0.3750 3.1455 ( 0 9 15) 0 0.9111 0.6862 12 16 ( 3593 1lc0_A) ( 906 1dpg_A) 0.7757 0.7288 4.4546 ( 2 22 45) 0 0.8258 0.7642 12 13 ( 3593 1lc0_A) ( 972 1dxy ) 0.4997 0.3749 6.8547 ( 0 4 15) 0 0.8247 0.6229 12 16 ( 3593 1lc0_A) ( 1053 1e6u_A) 0.7893 0.4521 6.0571 ( 2 24 45) 0 0.8666 0.4972 12 22 ( 3593 1lc0_A) ( 1071 1e7w_A) 0.9018 0.6444 7.6897 ( 1 22 55) 0 0.9088 0.6457 12 17 ( 3593 1lc0_A) ( 1094 1ebf_A) 0.5000 0.5000 3.0742 ( 0 7 15) 0 0.8171 0.8171 12 12 ( 3593 1lc0_A) ( 1117 1edz_A) 0.5828 0.5828 6.7403 ( 0 9 21) 0 0.7443 0.7443 12 12 ( 3593 1lc0_A) ( 1189 1ek6_A) 0.8255 0.4542 3.8199 ( 1 19 45) 0 0.9062 0.5380 12 22 ( 3593 1lc0_A) ( 1219 1enp ) 0.9040 0.6094 7.6109 ( 1 24 55) 0 0.9086 0.6100 12 18 ( 3593 1lc0_A) ( 1221 1eny ) 0.8235 0.5865 4.3849 ( 1 18 45) 0 0.9116 0.6462 12 17 ( 3593 1lc0_A) ( 1242 1eq2_A) 0.4167 0.2273 3.3790 ( 0 2 10) 0 0.8227 0.4885 12 22 ( 3593 1lc0_A) ( 1355 1f14_A) 0.5000 0.4000 3.2432 ( 0 7 15) 0 0.6661 0.5600 12 15 ( 3593 1lc0_A) ( 1436 1f8f_A) 0.4167 0.3571 3.0922 ( 0 1 10) 0 0.8965 0.7762 12 14 ( 3593 1lc0_A) ( 1487 1ff9_A) 0.8270 0.6646 3.2710 ( 1 20 45) 0 0.9156 0.7330 12 15 ( 3593 1lc0_A) ( 1531 1fjh_A) 0.9019 0.6839 6.7919 ( 1 20 55) 0 0.9019 0.6839 12 16 ( 3593 1lc0_A) ( 1560 1fmc_A) 0.4166 0.2941 4.8775 ( 0 1 10) 0 0.9131 0.6464 12 17 ( 3593 1lc0_A) ( 1804 1gdh_A) 0.4166 0.3571 6.7763 ( 0 4 10) 0 0.8243 0.7101 12 14 ( 3593 1lc0_A) ( 1807 1gee_A) 0.8211 0.4990 4.6116 ( 1 17 45) 0 0.9884 0.5991 12 20 ( 3593 1lc0_A) ( 1809 1geg_A) 0.8178 0.5854 5.0297 ( 1 16 45) 0 0.9124 0.6463 12 17 ( 3593 1lc0_A) ( 1899 1gpj_A) 0.4166 0.4166 6.6494 ( 0 2 10) 0 0.8327 0.8327 12 12 ( 3593 1lc0_A) ( 1922 1gr0_A) 0.8581 0.7566 5.8759 ( 2 25 55) 0 0.8581 0.7566 12 14 ( 3593 1lc0_A) ( 1948 1gtm_A) 0.4204 0.3501 3.5102 ( 1 5 15) 0 0.8330 0.6249 12 16 ( 3593 1lc0_A) ( 1956 1gu7_A) 0.4999 0.3529 5.2641 ( 0 7 15) 0 0.8134 0.5846 12 17 ( 3593 1lc0_A) ( 2004 1gy8_A) 0.8391 0.4746 6.6295 ( 2 23 55) 0 0.9033 0.4777 12 23 ( 3593 1lc0_A) ( 2016 1gz3_A) 0.4167 0.2941 3.6522 ( 0 3 10) 0 0.9127 0.6464 12 17 ( 3593 1lc0_A) ( 2017 1gz6_A) 0.8008 0.4972 4.8288 ( 1 13 45) 0 0.9135 0.5842 12 20 ( 3593 1lc0_A) ( 2046 1h2b_A) 0.7141 0.6253 3.4680 ( 1 11 36) 0 0.9152 0.7850 12 14 ( 3593 1lc0_A) ( 2090 1h5q_A) 0.9038 0.5490 7.4452 ( 1 23 55) 0 0.9123 0.5497 12 20 ( 3593 1lc0_A) ( 2095 1h6d_A) 0.8671 0.7613 3.5741 ( 2 26 55) 0 0.8687 0.7622 12 14 ( 3593 1lc0_A) ( 2180 1hdc_A) 0.8138 0.5847 4.8642 ( 1 15 45) 0 0.9088 0.6457 12 17 ( 3593 1lc0_A) ( 2189 1hdo_A) 0.8232 0.6633 4.8317 ( 1 18 45) 0 0.8308 0.6658 12 15 ( 3593 1lc0_A) ( 2194 1het_A) 0.5833 0.4667 3.6066 ( 0 5 21) 0 0.8015 0.6879 12 15 ( 3593 1lc0_A) ( 2270 1hrd_A) 0.4999 0.3750 4.9219 ( 0 4 15) 0 0.8292 0.6240 12 16 ( 3593 1lc0_A) ( 2309 1hwx_A) 0.5000 0.3529 3.2947 ( 0 5 15) 0 0.7496 0.5294 12 17 ( 3593 1lc0_A) ( 2316 1hxh_A) 0.8139 0.6202 4.7333 ( 1 15 45) 0 0.9081 0.6854 12 16 ( 3593 1lc0_A) ( 2328 1hye_A) 0.7442 0.8092 4.2537 ( 1 18 36) 0 0.7494 0.8172 12 11 ( 3593 1lc0_A) ( 2330 1hyh_A) 0.7497 0.8177 4.2504 ( 0 18 36) 0 0.7497 0.8177 12 11 ( 3593 1lc0_A) ( 2368 1i24_A) 0.8254 0.3702 3.9669 ( 1 19 45) 0 0.8316 0.3982 12 27 ( 3593 1lc0_A) ( 2376 1i36_A) 0.5813 0.4660 9.3900 ( 0 7 21) 0 0.7488 0.5996 12 15 ( 3593 1lc0_A) ( 2463 1id1_A) 0.7385 0.6845 4.1597 ( 1 15 36) 0 0.8229 0.7622 12 13 ( 3593 1lc0_A) ( 2615 1iuk_A) 0.6666 0.6666 3.5179 ( 0 9 28) 0 0.7629 0.7629 12 12 ( 3593 1lc0_A) ( 2657 1iy8_A) 0.8326 0.5881 4.7018 ( 0 14 45) 0 0.9135 0.6465 12 17 ( 3593 1lc0_A) ( 2674 1iz0_A) 0.4998 0.3999 6.7035 ( 0 4 15) 0 0.8330 0.6878 12 15 ( 3593 1lc0_A) ( 2725 1j3v_A) 0.7409 0.6659 5.7948 ( 2 19 45) 0 0.8257 0.7107 12 14 ( 3593 1lc0_A) ( 2736 1j5p_A) 0.7499 0.8998 3.0541 ( 0 14 36) 0 0.7499 0.8998 12 10 ( 3593 1lc0_A) ( 2781 1ja9_A) 0.8212 0.5860 4.3886 ( 1 17 45) 0 0.9122 0.6463 12 17 ( 3593 1lc0_A) ( 2789 1jax_A) 0.4167 0.2500 3.4435 ( 0 4 10) 0 0.6664 0.4204 12 20 ( 3593 1lc0_A) ( 3017 1jqb_A) 0.5828 0.4665 6.6290 ( 0 6 21) 0 0.8314 0.6660 12 15 ( 3593 1lc0_A) ( 3059 1jtv_A) 0.7258 0.5370 4.5525 ( 2 18 45) 0 0.9830 0.6644 12 18 ( 3593 1lc0_A) ( 3072 1jvb_A) 0.4167 0.3846 2.8297 ( 0 2 10) 0 0.8327 0.7688 12 13 ( 3593 1lc0_A) ( 3144 1k2w_A) 0.8210 0.5860 4.7739 ( 1 17 45) 0 0.9130 0.6464 12 17 ( 3593 1lc0_A) ( 3192 1k6j_A) 0.9084 0.4581 6.1930 ( 1 24 55) 0 0.9842 0.4995 12 24 ( 3593 1lc0_A) ( 3257 1kbz_A) 0.8143 0.5243 3.9545 ( 1 15 45) 0 0.8143 0.5561 12 19 ( 3593 1lc0_A) ( 3385 1kol_A) 0.4167 0.3125 3.1304 ( 0 3 10) 0 0.7757 0.6164 12 16 ( 3593 1lc0_A) ( 3414 1ks9_A) 0.4166 0.2941 4.4554 ( 0 3 10) 0 0.5037 0.4467 12 17 ( 3593 1lc0_A) ( 3481 1kyq_A) 0.4167 0.5000 4.2611 ( 0 0 10) 0 0.6665 0.7996 12 10 ( 3593 1lc0_A) ( 3561 1l7d_A) 0.6665 0.5333 4.0375 ( 0 11 28) 0 0.8321 0.6663 12 15 ( 3593 1lc0_A) ( 3593 1lc0_A) 1.0000 1.0000 0.0000 ( 0 39 66) 0 1.0000 1.0000 12 12 ( 3593 1lc0_A) ( 3606 1ldn_A) 0.7498 0.7498 3.7382 ( 0 17 36) 0 0.7498 0.7498 12 12 ( 3593 1lc0_A) ( 3610 1leh_A) 0.4165 0.3845 7.8279 ( 0 4 10) 0 0.7386 0.6846 12 13 ( 3593 1lc0_A) ( 3633 1li4_A) 0.4997 0.4613 7.2062 ( 0 7 15) 0 0.8323 0.7686 12 13 ( 3593 1lc0_A) ( 3637 1lj8_A) 0.4166 0.2500 5.8580 ( 0 7 10) 0 0.7496 0.4500 12 20 ( 3593 1lc0_A) ( 3677 1lnq_A) 0.7411 0.4988 3.5175 ( 1 16 36) 0 0.7498 0.5172 12 18 ( 3593 1lc0_A) ( 3722 1lss_A) 0.7385 0.7385 3.8269 ( 1 15 36) 0 0.8225 0.8225 12 12 ( 3593 1lc0_A) ( 3724 1lsu_A) 0.5833 0.5833 3.1451 ( 0 6 21) 0 0.8307 0.8307 12 12 ( 3593 1lc0_A) ( 3734 1lu9_A) 0.4167 0.3571 3.3048 ( 0 4 10) 0 0.8251 0.7104 12 14 ( 3593 1lc0_A) ( 3854 1m66_A) 0.7498 0.5624 4.0740 ( 0 16 36) 0 0.7498 0.5624 12 16 ( 3593 1lc0_A) ( 4047 1mv8_A) 0.6666 0.4706 3.4677 ( 0 11 28) 0 0.7763 0.6139 12 17 ( 3593 1lc0_A) ( 4067 1mx3_A) 0.4166 0.3571 4.4782 ( 0 3 10) 0 0.8317 0.7135 12 14 ( 3593 1lc0_A) ( 4131 1n5d_A) 0.8329 0.5882 4.1691 ( 0 14 45) 0 0.9121 0.6463 12 17 ( 3593 1lc0_A) ( 4341 1np3_A) 0.6666 0.4706 3.6430 ( 0 16 28) 0 0.6666 0.4993 12 17 ( 3593 1lc0_A) ( 4351 1npy_A) 0.4167 0.3846 3.3527 ( 0 3 10) 0 0.9114 0.8426 12 13 ( 3593 1lc0_A) ( 4404 1nvm_B) 0.7430 0.7430 2.3436 ( 1 17 36) 0 0.9141 0.9141 12 12 ( 3593 1lc0_A) ( 4409 1nvt_A) 0.5833 0.5833 2.8997 ( 0 8 21) 0 0.7496 0.7496 12 12 ( 3593 1lc0_A) ( 4417 1nwc_A) 0.6797 0.7183 2.9330 ( 2 18 36) 0 0.7489 0.8164 12 11 ( 3593 1lc0_A) ( 4430 1nxq_A) 0.8138 0.5529 4.8507 ( 1 15 45) 0 0.9132 0.6107 12 18 ( 3593 1lc0_A) ( 4447 1nyt_A) 0.6666 0.6153 3.4163 ( 0 11 28) 0 0.9133 0.8439 12 13 ( 3593 1lc0_A) ( 4499 1o5i_A) 0.9085 0.6456 7.6162 ( 0 18 55) 0 0.9142 0.6466 12 17 ( 3593 1lc0_A) ( 4520 1o6z_A) 0.7497 0.8177 4.2130 ( 0 18 36) 0 0.7652 0.8177 12 11 ( 3593 1lc0_A) ( 4549 1o89_A) 0.5833 0.5384 4.1948 ( 0 9 21) 0 0.7497 0.6921 12 13 ( 3593 1lc0_A) ( 4573 1oaa ) 0.4167 0.3125 3.3167 ( 0 1 10) 0 0.9620 0.7404 12 16 ( 3593 1lc0_A) ( 4585 1obb_A) 0.7499 0.6922 3.5733 ( 0 15 36) 0 0.7499 0.6922 12 13 ( 3593 1lc0_A) ( 4588 1obf_O) 0.6666 0.6666 3.2466 ( 0 13 28) 0 0.6666 0.6666 12 12 ( 3593 1lc0_A) ( 4668 1oi7_A) 0.6667 0.8000 2.3515 ( 0 11 28) 0 0.7491 0.8977 12 10 ( 3593 1lc0_A) ( 4730 1ono_A) 0.6657 0.6657 6.6625 ( 0 10 28) 0 0.7377 0.7377 12 12 ( 3593 1lc0_A) ( 4739 1ooe_A) 0.8207 0.7083 5.2157 ( 1 17 45) 0 0.8310 0.7132 12 14 ( 3593 1lc0_A) ( 4765 1orr_A) 0.9071 0.4229 6.3726 ( 1 23 55) 0 0.9918 0.4614 12 26 ( 3593 1lc0_A) ( 4863 1p1j_A) 0.7838 0.3985 4.1147 ( 2 23 45) 0 0.7838 0.4194 12 25 ( 3593 1lc0_A) ( 4943 1p9l_A) 0.8282 0.9012 2.5200 ( 1 21 45) 0 0.8310 0.9054 12 11 ( 3593 1lc0_A) ( 5029 1pjq_A) 0.4166 0.4999 4.8868 ( 0 0 10) 0 0.7351 0.8647 12 10 ( 3593 1lc0_A) ( 5045 1pl7_A) 0.5833 0.5384 4.1091 ( 0 8 21) 0 0.7836 0.7346 12 13 ( 3593 1lc0_A) ( 5082 1pqw_A) 0.4166 0.3125 5.4684 ( 0 1 10) 0 0.8321 0.6247 12 16 ( 3593 1lc0_A) ( 5097 1psd_A) 0.4203 0.4203 7.8910 ( 1 5 15) 0 0.8493 0.8493 12 12 ( 3593 1lc0_A) ( 5140 1px0_A) 0.8494 0.6694 6.2047 ( 2 24 55) 0 0.8956 0.6823 12 16 ( 3593 1lc0_A) ( 5227 1q7c_A) 0.7233 0.4962 5.2313 ( 1 12 36) 0 0.9142 0.6108 12 18 ( 3593 1lc0_A) ( 5362 1qki_A) 0.7838 0.7838 4.0732 ( 2 23 45) 0 0.8304 0.8304 12 12 ( 3593 1lc0_A) ( 5387 1qmg_A) 0.6665 0.4210 4.3030 ( 0 16 28) 0 0.7409 0.4727 12 19 ( 3593 1lc0_A) ( 5406 1qor_A) 0.4167 0.3846 3.1185 ( 0 3 10) 0 0.8302 0.7671 12 13 ( 3593 1lc0_A) ( 5409 1qp8_A) 0.5000 0.4615 4.1621 ( 0 8 15) 0 0.8180 0.7743 12 13 ( 3593 1lc0_A) ( 5444 1qsg_A) 0.8251 0.5544 4.6754 ( 1 19 45) 0 0.9044 0.6094 12 18 ( 3593 1lc0_A) ( 5493 1qyc_A) 0.8266 0.4165 4.4726 ( 1 20 45) 0 0.9062 0.4580 12 24 ( 3593 1lc0_A) ( 5571 1r6d_A) 0.5826 0.2916 7.3511 ( 0 10 21) 0 0.8314 0.4422 12 24 ( 3593 1lc0_A) ( 5654 1rjw_A) 0.4167 0.3333 3.0186 ( 0 2 10) 0 0.9056 0.7296 12 15 ( 3593 1lc0_A) ( 5665 1rkx_A) 0.6012 0.4757 6.1456 ( 3 19 55) 0 0.8748 0.5389 12 21 ( 3593 1lc0_A) ( 5786 1say_A) 0.5825 0.5825 7.5481 ( 0 8 21) 0 0.8317 0.8317 12 12 ( 3593 1lc0_A) ( 5838 1spx_A) 0.8995 0.6439 7.5264 ( 1 20 55) 0 0.9888 0.7039 12 17 ( 3593 1lc0_A) ( 5877 1t2d_A) 0.7498 0.8179 3.7979 ( 0 17 36) 0 0.7498 0.8179 12 11 ( 3593 1lc0_A) ( 5942 1u8x_X) 0.7442 0.7442 4.1191 ( 1 18 36) 0 0.7541 0.7541 12 12 ( 3593 1lc0_A) ( 5954 1uay_A) 0.8211 0.6220 4.6398 ( 1 17 45) 0 0.9097 0.6858 12 16 ( 3593 1lc0_A) ( 6085 1ur5_A) 0.7498 0.7498 3.9407 ( 0 18 36) 0 0.7656 0.7656 12 12 ( 3593 1lc0_A) ( 6114 1uuf_A) 0.5000 0.4286 3.9104 ( 0 8 15) 0 0.8725 0.7641 12 14 ( 3593 1lc0_A) ( 6257 1vi2_A) 0.6666 0.6153 3.5631 ( 0 15 28) 0 0.9133 0.8439 12 13 ( 3593 1lc0_A) ( 6274 1vj0_A) 0.5826 0.4373 7.2492 ( 0 7 21) 0 0.8308 0.6282 12 16 ( 3593 1lc0_A) ( 6276 1vj1_A) 0.4167 0.3571 3.3857 ( 0 4 10) 0 0.9096 0.7824 12 14 ( 3593 1lc0_A) ( 6292 1vjp_A) 0.8575 0.7563 6.2686 ( 2 25 55) 0 0.9063 0.7809 12 14 ( 3593 1lc0_A) ( 6341 1xcb_A) 0.5833 0.8750 2.1349 ( 0 10 21) 0 0.5833 0.8750 12 8 ( 3593 1lc0_A) ( 6388 2ae1 ) 0.8084 0.5836 4.7197 ( 1 14 45) 0 0.9850 0.7032 12 17 ( 3593 1lc0_A) ( 6420 2cmd ) 0.7499 0.7499 3.4376 ( 0 18 36) 0 0.7499 0.7499 12 12 ( 3593 1lc0_A) ( 6426 2dap ) 0.7411 0.8786 3.1235 ( 1 16 36) 0 0.7411 0.8786 12 10 ( 3593 1lc0_A) ( 6497 2nac_A) 0.4166 0.3845 6.7195 ( 0 3 10) 0 0.8329 0.7690 12 13 ( 3593 1lc0_A) ( 6505 2pgd ) 0.4167 0.3571 4.2331 ( 0 3 10) 0 0.8295 0.7125 12 14 ( 3593 1lc0_A) ( 6627 6ldh ) 0.7384 0.6845 4.3719 ( 1 15 36) 0 0.8226 0.7620 12 13 -------------------------------------------------------------------------------------------------------------------------