------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3637 1lj8_A) ( 42 1a4i_A) 0.2000 0.4000 5.4423 ( 0 2 6) 0 0.4000 0.7985 20 10 ( 3637 1lj8_A) ( 265 1b16_A) 0.5499 0.6873 4.5132 ( 0 33 55) 0 0.5499 0.6873 20 16 ( 3637 1lj8_A) ( 312 1b7g_O) 0.3000 0.4615 3.4424 ( 0 9 15) 0 0.5494 0.8414 20 13 ( 3637 1lj8_A) ( 319 1b8p_A) 0.4999 0.9080 4.6781 ( 0 26 45) 0 0.4999 0.9080 20 11 ( 3637 1lj8_A) ( 352 1bdb ) 0.5499 0.6109 5.1630 ( 0 25 55) 0 0.5499 0.6109 20 18 ( 3637 1lj8_A) ( 377 1bg6 ) 0.3999 0.4442 4.4485 ( 1 21 28) 0 0.6985 0.7752 20 18 ( 3637 1lj8_A) ( 506 1c1d_A) 0.2910 0.4203 7.3434 ( 1 5 15) 0 0.3500 0.5831 20 12 ( 3637 1lj8_A) ( 707 1cyd_A) 0.5499 0.6109 5.1556 ( 0 25 55) 0 0.5499 0.6109 20 18 ( 3637 1lj8_A) ( 781 1db3_A) 0.4998 0.4544 4.7163 ( 1 28 45) 0 0.4999 0.4545 20 22 ( 3637 1lj8_A) ( 847 1dih ) 0.3000 0.8545 6.2096 ( 0 7 15) 0 0.3500 0.9972 20 7 ( 3637 1lj8_A) ( 873 1dlj_A) 0.5998 0.7494 4.8319 ( 1 52 66) 0 0.5998 0.7494 20 16 ( 3637 1lj8_A) ( 906 1dpg_A) 0.3000 0.4615 2.5561 ( 0 7 15) 0 0.4500 0.6921 20 13 ( 3637 1lj8_A) ( 972 1dxy ) 0.3121 0.3238 5.9984 ( 6 20 36) 0 0.4998 0.6243 20 16 ( 3637 1lj8_A) ( 1053 1e6u_A) 0.2500 0.2273 6.5672 ( 0 6 10) 0 0.5484 0.4990 20 22 ( 3637 1lj8_A) ( 1071 1e7w_A) 0.5498 0.6467 5.4305 ( 0 27 55) 0 0.5498 0.6467 20 17 ( 3637 1lj8_A) ( 1094 1ebf_A) 0.4201 0.5505 4.8065 ( 2 12 36) 0 0.4324 0.6444 20 12 ( 3637 1lj8_A) ( 1117 1edz_A) 0.2801 0.2970 4.8405 ( 5 15 28) 0 0.4432 0.6794 20 12 ( 3637 1lj8_A) ( 1189 1ek6_A) 0.4981 0.4739 6.9868 ( 7 41 66) 0 0.4993 0.4739 20 22 ( 3637 1lj8_A) ( 1219 1enp ) 0.3405 0.3436 5.7683 ( 12 42 66) 0 0.5425 0.5986 20 18 ( 3637 1lj8_A) ( 1221 1eny ) 0.5483 0.6433 5.6184 ( 2 34 55) 0 0.5799 0.6636 20 17 ( 3637 1lj8_A) ( 1242 1eq2_A) 0.2797 0.2776 5.5181 ( 13 37 55) 0 0.5257 0.4844 20 22 ( 3637 1lj8_A) ( 1355 1f14_A) 0.6378 0.8200 5.7331 ( 5 62 78) 0 0.6378 0.8200 20 15 ( 3637 1lj8_A) ( 1436 1f8f_A) 0.5494 0.7823 5.6416 ( 1 24 55) 0 0.5494 0.7823 20 14 ( 3637 1lj8_A) ( 1487 1ff9_A) 0.5031 0.5920 4.6699 ( 5 34 55) 0 0.5496 0.7316 20 15 ( 3637 1lj8_A) ( 1531 1fjh_A) 0.3496 0.4363 7.6454 ( 1 14 21) 0 0.4997 0.6242 20 16 ( 3637 1lj8_A) ( 1560 1fmc_A) 0.5996 0.7050 6.0551 ( 0 29 66) 0 0.5996 0.7050 20 17 ( 3637 1lj8_A) ( 1804 1gdh_A) 0.2500 0.3571 4.5412 ( 0 7 10) 0 0.4961 0.6926 20 14 ( 3637 1lj8_A) ( 1807 1gee_A) 0.5499 0.5499 4.9005 ( 0 26 55) 0 0.5638 0.5638 20 20 ( 3637 1lj8_A) ( 1809 1geg_A) 0.5497 0.6464 5.2894 ( 1 30 55) 0 0.5497 0.6464 20 17 ( 3637 1lj8_A) ( 1899 1gpj_A) 0.2500 0.4167 3.4667 ( 0 5 10) 0 0.4998 0.8313 20 12 ( 3637 1lj8_A) ( 1922 1gr0_A) 0.3000 0.4286 4.3816 ( 0 7 15) 0 0.4432 0.6063 20 14 ( 3637 1lj8_A) ( 1948 1gtm_A) 0.3060 0.3165 4.3360 ( 4 13 36) 0 0.4718 0.5622 20 16 ( 3637 1lj8_A) ( 1956 1gu7_A) 0.3967 0.4180 4.5421 ( 6 27 45) 0 0.4849 0.5563 20 17 ( 3637 1lj8_A) ( 2004 1gy8_A) 0.2000 0.1739 3.8942 ( 0 2 6) 0 0.4998 0.4347 20 23 ( 3637 1lj8_A) ( 2016 1gz3_A) 0.4500 0.5293 4.8224 ( 0 14 36) 0 0.4998 0.5878 20 17 ( 3637 1lj8_A) ( 2017 1gz6_A) 0.3000 0.3000 6.4533 ( 0 6 15) 0 0.5992 0.5992 20 20 ( 3637 1lj8_A) ( 2046 1h2b_A) 0.4999 0.7139 4.7935 ( 0 18 45) 0 0.5119 0.7139 20 14 ( 3637 1lj8_A) ( 2090 1h5q_A) 0.5499 0.5499 4.8713 ( 0 24 55) 0 0.5499 0.5499 20 20 ( 3637 1lj8_A) ( 2095 1h6d_A) 0.3000 0.4285 5.8876 ( 0 9 15) 0 0.4974 0.6996 20 14 ( 3637 1lj8_A) ( 2180 1hdc_A) 0.5997 0.7052 5.7086 ( 0 30 66) 0 0.5997 0.7052 20 17 ( 3637 1lj8_A) ( 2189 1hdo_A) 0.4999 0.6664 4.9337 ( 0 27 45) 0 0.5499 0.7329 20 15 ( 3637 1lj8_A) ( 2194 1het_A) 0.4990 0.6626 4.6286 ( 1 17 45) 0 0.4997 0.6654 20 15 ( 3637 1lj8_A) ( 2270 1hrd_A) 0.2500 0.3125 3.1018 ( 0 4 10) 0 0.4996 0.6237 20 16 ( 3637 1lj8_A) ( 2309 1hwx_A) 0.3119 0.3274 4.2623 ( 2 7 28) 0 0.4000 0.4705 20 17 ( 3637 1lj8_A) ( 2316 1hxh_A) 0.5994 0.7483 5.8651 ( 1 31 66) 0 0.5994 0.7483 20 16 ( 3637 1lj8_A) ( 2328 1hye_A) 0.4999 0.9072 5.3235 ( 0 33 45) 0 0.4999 0.9072 20 11 ( 3637 1lj8_A) ( 2330 1hyh_A) 0.4999 0.9065 4.8148 ( 1 33 45) 0 0.4999 0.9065 20 11 ( 3637 1lj8_A) ( 2368 1i24_A) 0.5497 0.4074 6.0226 ( 0 32 55) 0 0.5497 0.4074 20 27 ( 3637 1lj8_A) ( 2376 1i36_A) 0.2500 0.3333 3.6800 ( 0 4 10) 0 0.5497 0.7321 20 15 ( 3637 1lj8_A) ( 2463 1id1_A) 0.4998 0.7677 3.9254 ( 1 27 45) 0 0.5279 0.7677 20 13 ( 3637 1lj8_A) ( 2615 1iuk_A) 0.2994 0.4925 3.5392 ( 1 10 15) 0 0.4973 0.8010 20 12 ( 3637 1lj8_A) ( 2657 1iy8_A) 0.5996 0.7050 6.0026 ( 0 29 66) 0 0.5996 0.7050 20 17 ( 3637 1lj8_A) ( 2674 1iz0_A) 0.5072 0.6014 6.0436 ( 4 28 55) 0 0.5072 0.6014 20 15 ( 3637 1lj8_A) ( 2725 1j3v_A) 0.4999 0.7135 4.8352 ( 1 32 45) 0 0.5412 0.7137 20 14 ( 3637 1lj8_A) ( 2736 1j5p_A) 0.3370 0.5073 5.0452 ( 2 11 21) 0 0.4588 0.8958 20 10 ( 3637 1lj8_A) ( 2781 1ja9_A) 0.5995 0.7048 6.2891 ( 0 30 66) 0 0.5995 0.7048 20 17 ( 3637 1lj8_A) ( 2789 1jax_A) 0.4783 0.4783 4.7888 ( 9 49 66) 0 0.5914 0.5914 20 20 ( 3637 1lj8_A) ( 3017 1jqb_A) 0.4997 0.6654 4.8784 ( 1 24 45) 0 0.5479 0.7248 20 15 ( 3637 1lj8_A) ( 3059 1jtv_A) 0.4976 0.5516 4.6418 ( 2 27 45) 0 0.4997 0.5550 20 18 ( 3637 1lj8_A) ( 3072 1jvb_A) 0.4500 0.6922 3.6883 ( 0 15 36) 0 0.4998 0.7671 20 13 ( 3637 1lj8_A) ( 3144 1k2w_A) 0.5499 0.6469 4.6437 ( 0 28 55) 0 0.5499 0.6469 20 17 ( 3637 1lj8_A) ( 3192 1k6j_A) 0.5499 0.4583 4.7860 ( 0 30 55) 0 0.5499 0.4583 20 24 ( 3637 1lj8_A) ( 3257 1kbz_A) 0.2500 0.2631 6.5970 ( 0 3 10) 0 0.4937 0.5182 20 19 ( 3637 1lj8_A) ( 3385 1kol_A) 0.4312 0.4594 5.7932 ( 7 34 55) 0 0.4996 0.6239 20 16 ( 3637 1lj8_A) ( 3414 1ks9_A) 0.6233 0.7094 6.3007 ( 6 60 78) 0 0.6946 0.8115 20 17 ( 3637 1lj8_A) ( 3481 1kyq_A) 0.3983 0.7517 4.6035 ( 1 11 28) 0 0.3983 0.7517 20 10 ( 3637 1lj8_A) ( 3561 1l7d_A) 0.3983 0.5262 3.3724 ( 1 11 28) 0 0.4934 0.6406 20 15 ( 3637 1lj8_A) ( 3593 1lc0_A) 0.3346 0.3616 6.4199 ( 6 22 36) 0 0.4500 0.7496 20 12 ( 3637 1lj8_A) ( 3606 1ldn_A) 0.4984 0.8138 4.8694 ( 2 30 45) 0 0.4998 0.8310 20 12 ( 3637 1lj8_A) ( 3610 1leh_A) 0.2615 0.2723 4.1210 ( 4 11 28) 0 0.3982 0.6006 20 13 ( 3637 1lj8_A) ( 3633 1li4_A) 0.2801 0.2959 4.0566 ( 4 12 28) 0 0.4981 0.7379 20 13 ( 3637 1lj8_A) ( 3637 1lj8_A) 1.0000 1.0000 0.0000 ( 0 164 190) 0 1.0000 1.0000 20 20 ( 3637 1lj8_A) ( 3677 1lnq_A) 0.5994 0.6657 6.3920 ( 1 42 66) 0 0.5994 0.6657 20 18 ( 3637 1lj8_A) ( 3722 1lss_A) 0.4998 0.8304 4.0128 ( 1 25 45) 0 0.4998 0.8304 20 12 ( 3637 1lj8_A) ( 3724 1lsu_A) 0.5394 0.8118 4.9711 ( 3 31 55) 0 0.5394 0.8118 20 12 ( 3637 1lj8_A) ( 3734 1lu9_A) 0.3734 0.4631 3.7460 ( 3 16 28) 0 0.4998 0.7128 20 14 ( 3637 1lj8_A) ( 3854 1m66_A) 0.6434 0.7931 4.6705 ( 4 58 78) 0 0.6479 0.8062 20 16 ( 3637 1lj8_A) ( 4047 1mv8_A) 0.6496 0.7639 5.2635 ( 1 59 78) 0 0.6496 0.7639 20 17 ( 3637 1lj8_A) ( 4067 1mx3_A) 0.2500 0.3571 3.8767 ( 0 6 10) 0 0.4937 0.6800 20 14 ( 3637 1lj8_A) ( 4131 1n5d_A) 0.3064 0.3100 5.9546 ( 7 22 55) 0 0.5356 0.6163 20 17 ( 3637 1lj8_A) ( 4341 1np3_A) 0.6334 0.7293 5.8486 ( 5 57 78) 0 0.6774 0.7759 20 17 ( 3637 1lj8_A) ( 4351 1npy_A) 0.3000 0.4615 4.7109 ( 0 6 15) 0 0.4495 0.6883 20 13 ( 3637 1lj8_A) ( 4404 1nvm_B) 0.2999 0.4982 11.0568 ( 0 9 15) 0 0.4998 0.8309 20 12 ( 3637 1lj8_A) ( 4409 1nvt_A) 0.2523 0.2910 7.0339 ( 3 9 15) 0 0.4497 0.7460 20 12 ( 3637 1lj8_A) ( 4417 1nwc_A) 0.2500 0.4543 7.7978 ( 0 7 10) 0 0.4496 0.8110 20 11 ( 3637 1lj8_A) ( 4430 1nxq_A) 0.5477 0.6072 5.1996 ( 2 31 55) 0 0.5492 0.6097 20 18 ( 3637 1lj8_A) ( 4447 1nyt_A) 0.2500 0.3846 3.6596 ( 0 6 10) 0 0.4998 0.7672 20 13 ( 3637 1lj8_A) ( 4499 1o5i_A) 0.5499 0.6469 4.3351 ( 0 23 55) 0 0.5499 0.6469 20 17 ( 3637 1lj8_A) ( 4520 1o6z_A) 0.4999 0.9062 5.0951 ( 1 33 45) 0 0.5337 0.9062 20 11 ( 3637 1lj8_A) ( 4549 1o89_A) 0.4000 0.6153 4.0167 ( 0 14 28) 0 0.4997 0.7670 20 13 ( 3637 1lj8_A) ( 4573 1oaa ) 0.2500 0.3125 4.7802 ( 0 3 10) 0 0.5994 0.7480 20 16 ( 3637 1lj8_A) ( 4585 1obb_A) 0.4976 0.7497 4.8093 ( 2 27 45) 0 0.4998 0.7672 20 13 ( 3637 1lj8_A) ( 4588 1obf_O) 0.3962 0.6241 4.5021 ( 2 18 28) 0 0.5406 0.8210 20 12 ( 3637 1lj8_A) ( 4668 1oi7_A) 0.3952 0.6920 4.2292 ( 2 17 28) 0 0.4468 0.8188 20 10 ( 3637 1lj8_A) ( 4730 1ono_A) 0.4365 0.6305 4.3405 ( 2 15 36) 0 0.5390 0.8090 20 12 ( 3637 1lj8_A) ( 4739 1ooe_A) 0.3000 0.4285 6.5073 ( 0 6 15) 0 0.5496 0.7834 20 14 ( 3637 1lj8_A) ( 4765 1orr_A) 0.2500 0.1923 3.9765 ( 0 4 10) 0 0.5464 0.4221 20 26 ( 3637 1lj8_A) ( 4863 1p1j_A) 0.3346 0.3054 6.6017 ( 6 22 36) 0 0.4975 0.3992 20 25 ( 3637 1lj8_A) ( 4943 1p9l_A) 0.2500 0.4544 6.4485 ( 0 6 10) 0 0.4962 0.8450 20 11 ( 3637 1lj8_A) ( 5029 1pjq_A) 0.4251 0.5994 4.4382 ( 3 19 36) 0 0.4494 0.8823 20 10 ( 3637 1lj8_A) ( 5045 1pl7_A) 0.4718 0.6140 5.4872 ( 4 28 45) 0 0.4962 0.7391 20 13 ( 3637 1lj8_A) ( 5082 1pqw_A) 0.5499 0.6871 5.0414 ( 0 21 55) 0 0.5499 0.6871 20 16 ( 3637 1lj8_A) ( 5097 1psd_A) 0.3121 0.3301 6.1066 ( 6 20 36) 0 0.4997 0.8294 20 12 ( 3637 1lj8_A) ( 5140 1px0_A) 0.3000 0.3750 5.7874 ( 0 8 15) 0 0.5030 0.6240 20 16 ( 3637 1lj8_A) ( 5227 1q7c_A) 0.5499 0.6109 4.7802 ( 0 26 55) 0 0.5499 0.6109 20 18 ( 3637 1lj8_A) ( 5362 1qki_A) 0.2500 0.4167 3.2741 ( 0 5 10) 0 0.4000 0.6665 20 12 ( 3637 1lj8_A) ( 5387 1qmg_A) 0.5492 0.5779 4.4858 ( 2 41 55) 0 0.6609 0.6878 20 19 ( 3637 1lj8_A) ( 5406 1qor_A) 0.4500 0.6921 4.4870 ( 0 17 36) 0 0.5018 0.7679 20 13 ( 3637 1lj8_A) ( 5409 1qp8_A) 0.3237 0.4074 3.3352 ( 2 9 21) 0 0.4365 0.6110 20 13 ( 3637 1lj8_A) ( 5444 1qsg_A) 0.5481 0.6080 5.5638 ( 2 33 55) 0 0.5481 0.6080 20 18 ( 3637 1lj8_A) ( 5493 1qyc_A) 0.4998 0.4166 4.7288 ( 1 30 45) 0 0.4998 0.4166 20 24 ( 3637 1lj8_A) ( 5571 1r6d_A) 0.3018 0.2949 5.5374 ( 11 34 55) 0 0.4849 0.4104 20 24 ( 3637 1lj8_A) ( 5654 1rjw_A) 0.5466 0.7194 5.6657 ( 2 28 55) 0 0.5466 0.7194 20 15 ( 3637 1lj8_A) ( 5665 1rkx_A) 0.4997 0.4760 5.3319 ( 1 26 45) 0 0.6059 0.5835 20 21 ( 3637 1lj8_A) ( 5786 1say_A) 0.4496 0.7444 3.1495 ( 1 18 36) 0 0.4499 0.7482 20 12 ( 3637 1lj8_A) ( 5838 1spx_A) 0.4999 0.5880 5.4680 ( 0 15 45) 0 0.5322 0.6096 20 17 ( 3637 1lj8_A) ( 5877 1t2d_A) 0.4998 0.9052 5.4197 ( 1 30 45) 0 0.4998 0.9052 20 11 ( 3637 1lj8_A) ( 5942 1u8x_X) 0.4999 0.8322 5.2512 ( 0 30 45) 0 0.4999 0.8322 20 12 ( 3637 1lj8_A) ( 5954 1uay_A) 0.5264 0.6245 6.3756 ( 3 25 55) 0 0.5264 0.6248 20 16 ( 3637 1lj8_A) ( 6085 1ur5_A) 0.4999 0.8317 4.6083 ( 1 32 45) 0 0.5498 0.9141 20 12 ( 3637 1lj8_A) ( 6114 1uuf_A) 0.4825 0.6315 3.7667 ( 3 24 45) 0 0.5425 0.7453 20 14 ( 3637 1lj8_A) ( 6257 1vi2_A) 0.3000 0.4615 3.3403 ( 0 9 15) 0 0.4998 0.7673 20 13 ( 3637 1lj8_A) ( 6274 1vj0_A) 0.5497 0.6866 5.5579 ( 1 32 55) 0 0.5497 0.6866 20 16 ( 3637 1lj8_A) ( 6276 1vj1_A) 0.4996 0.7118 3.8197 ( 1 21 45) 0 0.5175 0.7118 20 14 ( 3637 1lj8_A) ( 6292 1vjp_A) 0.3000 0.4286 2.6417 ( 0 7 15) 0 0.4886 0.6563 20 14 ( 3637 1lj8_A) ( 6341 1xcb_A) 0.3500 0.8705 6.9630 ( 0 12 21) 0 0.3500 0.8746 20 8 ( 3637 1lj8_A) ( 6388 2ae1 ) 0.5498 0.6467 5.3779 ( 0 26 55) 0 0.5498 0.6467 20 17 ( 3637 1lj8_A) ( 6420 2cmd ) 0.4999 0.8318 4.3580 ( 1 32 45) 0 0.4999 0.8318 20 12 ( 3637 1lj8_A) ( 6426 2dap ) 0.4468 0.8193 5.3721 ( 2 22 36) 0 0.4500 0.8990 20 10 ( 3637 1lj8_A) ( 6497 2nac_A) 0.2500 0.3846 6.7113 ( 0 6 10) 0 0.4937 0.7215 20 13 ( 3637 1lj8_A) ( 6505 2pgd ) 0.5498 0.7843 5.5981 ( 1 39 55) 0 0.5498 0.7843 20 14 ( 3637 1lj8_A) ( 6627 6ldh ) 0.5499 0.8452 4.8788 ( 0 35 55) 0 0.5499 0.8452 20 13 -------------------------------------------------------------------------------------------------------------------------