------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3724 1lsu_A) ( 42 1a4i_A) 0.4204 0.4531 5.5279 ( 1 5 15) 0 0.6665 0.7996 12 10 ( 3724 1lsu_A) ( 265 1b16_A) 0.9128 0.6866 3.5250 ( 1 26 55) 0 0.9154 0.6872 12 16 ( 3724 1lsu_A) ( 312 1b7g_O) 0.5830 0.5382 6.1937 ( 0 10 21) 0 0.7750 0.7283 12 13 ( 3724 1lsu_A) ( 319 1b8p_A) 0.9136 0.9952 3.7667 ( 1 28 55) 0 0.9136 0.9952 12 11 ( 3724 1lsu_A) ( 352 1bdb ) 0.9123 0.6105 3.1233 ( 1 25 55) 0 0.9133 0.6494 12 18 ( 3724 1lsu_A) ( 377 1bg6 ) 0.7964 0.5502 3.4001 ( 2 25 45) 0 0.8319 0.5554 12 18 ( 3724 1lsu_A) ( 506 1c1d_A) 0.6041 0.6041 4.3973 ( 1 8 28) 0 0.6664 0.6664 12 12 ( 3724 1lsu_A) ( 707 1cyd_A) 0.9162 0.6111 3.6232 ( 0 22 55) 0 0.9163 0.6111 12 18 ( 3724 1lsu_A) ( 781 1db3_A) 0.9102 0.4997 4.2088 ( 1 23 55) 0 0.9102 0.4997 12 22 ( 3724 1lsu_A) ( 847 1dih ) 0.3333 0.5714 2.9066 ( 0 3 6) 0 0.5833 0.9994 12 7 ( 3724 1lsu_A) ( 873 1dlj_A) 0.7966 0.6156 2.4338 ( 2 25 45) 0 0.7966 0.6156 12 16 ( 3724 1lsu_A) ( 906 1dpg_A) 0.9142 0.8445 3.8239 ( 1 30 55) 0 0.9142 0.8445 12 13 ( 3724 1lsu_A) ( 972 1dxy ) 0.5000 0.3750 2.6701 ( 0 6 15) 0 0.7497 0.5774 12 16 ( 3724 1lsu_A) ( 1053 1e6u_A) 0.7385 0.4085 3.9816 ( 1 15 36) 0 0.8314 0.4825 12 22 ( 3724 1lsu_A) ( 1071 1e7w_A) 0.9161 0.6470 3.8670 ( 0 23 55) 0 0.9162 0.6470 12 17 ( 3724 1lsu_A) ( 1094 1ebf_A) 0.5000 0.5000 4.1054 ( 0 4 15) 0 0.7115 0.7115 12 12 ( 3724 1lsu_A) ( 1117 1edz_A) 0.4999 0.4999 4.5577 ( 0 6 15) 0 0.6458 0.6458 12 12 ( 3724 1lsu_A) ( 1189 1ek6_A) 0.9132 0.4998 3.6340 ( 1 27 55) 0 0.9158 0.5000 12 22 ( 3724 1lsu_A) ( 1219 1enp ) 0.9163 0.6111 3.5477 ( 0 26 55) 0 0.9949 0.6660 12 18 ( 3724 1lsu_A) ( 1221 1eny ) 0.9164 0.6470 3.3257 ( 0 27 55) 0 0.9164 0.6470 12 17 ( 3724 1lsu_A) ( 1242 1eq2_A) 0.8289 0.4543 3.3788 ( 1 22 45) 0 0.9731 0.5441 12 22 ( 3724 1lsu_A) ( 1355 1f14_A) 0.8018 0.6881 3.8795 ( 3 30 55) 0 0.8329 0.6881 12 15 ( 3724 1lsu_A) ( 1436 1f8f_A) 0.9156 0.7852 4.5178 ( 0 18 55) 0 0.9156 0.7852 12 14 ( 3724 1lsu_A) ( 1487 1ff9_A) 0.9130 0.7321 2.9080 ( 1 26 55) 0 0.9161 0.7331 12 15 ( 3724 1lsu_A) ( 1531 1fjh_A) 0.7496 0.5624 4.4524 ( 0 10 36) 0 0.9019 0.6839 12 16 ( 3724 1lsu_A) ( 1560 1fmc_A) 0.9161 0.6470 3.8863 ( 0 23 55) 0 0.9162 0.6470 12 17 ( 3724 1lsu_A) ( 1804 1gdh_A) 0.6242 0.5503 3.3237 ( 1 9 28) 0 0.8327 0.7411 12 14 ( 3724 1lsu_A) ( 1807 1gee_A) 0.9162 0.5500 3.7202 ( 0 26 55) 0 0.9162 0.5500 12 20 ( 3724 1lsu_A) ( 1809 1geg_A) 0.9161 0.6470 3.9166 ( 0 26 55) 0 0.9162 0.6470 12 17 ( 3724 1lsu_A) ( 1899 1gpj_A) 0.7907 0.7907 3.3056 ( 2 24 45) 0 0.8332 0.8332 12 12 ( 3724 1lsu_A) ( 1922 1gr0_A) 0.7260 0.6570 3.5367 ( 2 18 45) 0 0.8248 0.7103 12 14 ( 3724 1lsu_A) ( 1948 1gtm_A) 0.5000 0.3750 3.3168 ( 0 9 15) 0 0.8205 0.6219 12 16 ( 3724 1lsu_A) ( 1956 1gu7_A) 0.5830 0.4117 5.9656 ( 0 6 21) 0 0.9132 0.6464 12 17 ( 3724 1lsu_A) ( 2004 1gy8_A) 0.7760 0.4322 2.9121 ( 2 22 45) 0 0.8320 0.4347 12 23 ( 3724 1lsu_A) ( 2016 1gz3_A) 0.7549 0.5718 4.3582 ( 2 20 45) 0 0.8243 0.5866 12 17 ( 3724 1lsu_A) ( 2017 1gz6_A) 0.9161 0.5500 3.8928 ( 0 21 55) 0 0.9161 0.5500 12 20 ( 3724 1lsu_A) ( 2046 1h2b_A) 0.8271 0.7114 2.8091 ( 1 20 45) 0 0.8332 0.7142 12 14 ( 3724 1lsu_A) ( 2090 1h5q_A) 0.9162 0.5500 3.7349 ( 0 25 55) 0 0.9163 0.5500 12 20 ( 3724 1lsu_A) ( 2095 1h6d_A) 0.7551 0.6741 3.2701 ( 2 20 45) 0 0.8324 0.7139 12 14 ( 3724 1lsu_A) ( 2180 1hdc_A) 0.9163 0.6470 3.3713 ( 0 22 55) 0 0.9163 0.6470 12 17 ( 3724 1lsu_A) ( 2189 1hdo_A) 0.7758 0.6458 3.9012 ( 2 22 45) 0 0.8332 0.6666 12 15 ( 3724 1lsu_A) ( 2194 1het_A) 0.9158 0.7331 4.3178 ( 0 18 55) 0 0.9158 0.7331 12 15 ( 3724 1lsu_A) ( 2270 1hrd_A) 0.7497 0.5624 4.2048 ( 0 14 36) 0 0.8417 0.6670 12 16 ( 3724 1lsu_A) ( 2309 1hwx_A) 0.5000 0.3529 3.9673 ( 0 4 15) 0 0.7135 0.5224 12 17 ( 3724 1lsu_A) ( 2316 1hxh_A) 0.9164 0.6874 3.3482 ( 0 24 55) 0 0.9164 0.6874 12 16 ( 3724 1lsu_A) ( 2328 1hye_A) 0.8121 0.8537 4.3635 ( 3 31 55) 0 0.8121 0.8544 12 11 ( 3724 1lsu_A) ( 2330 1hyh_A) 0.7964 0.8545 3.3947 ( 2 25 45) 0 0.7964 0.8545 12 11 ( 3724 1lsu_A) ( 2368 1i24_A) 0.9161 0.4074 3.8367 ( 0 27 55) 0 0.9161 0.4074 12 27 ( 3724 1lsu_A) ( 2376 1i36_A) 0.7430 0.5977 2.3667 ( 1 17 36) 0 0.8305 0.6657 12 15 ( 3724 1lsu_A) ( 2463 1id1_A) 0.9276 0.8722 2.2473 ( 3 39 66) 0 0.9276 0.8722 12 13 ( 3724 1lsu_A) ( 2615 1iuk_A) 0.7386 0.7386 3.5369 ( 1 15 36) 0 0.8248 0.8248 12 12 ( 3724 1lsu_A) ( 2657 1iy8_A) 0.9163 0.6470 3.5846 ( 0 23 55) 0 0.9163 0.6470 12 17 ( 3724 1lsu_A) ( 2674 1iz0_A) 0.6504 0.6017 4.4645 ( 4 28 55) 0 0.9157 0.7330 12 15 ( 3724 1lsu_A) ( 2725 1j3v_A) 0.7444 0.6402 3.0142 ( 1 18 36) 0 0.8275 0.7116 12 14 ( 3724 1lsu_A) ( 2736 1j5p_A) 0.5833 0.6999 3.4967 ( 0 12 21) 0 0.7499 0.8997 12 10 ( 3724 1lsu_A) ( 2781 1ja9_A) 0.9163 0.6470 3.4710 ( 0 23 55) 0 0.9163 0.6470 12 17 ( 3724 1lsu_A) ( 2789 1jax_A) 0.8302 0.4998 3.0851 ( 1 24 45) 0 0.8909 0.5479 12 20 ( 3724 1lsu_A) ( 3017 1jqb_A) 0.8257 0.6641 2.6731 ( 1 19 45) 0 0.9158 0.7330 12 15 ( 3724 1lsu_A) ( 3059 1jtv_A) 0.9160 0.6110 4.0521 ( 0 27 55) 0 0.9162 0.6110 12 18 ( 3724 1lsu_A) ( 3072 1jvb_A) 0.7444 0.6885 2.6483 ( 1 18 36) 0 0.8329 0.7690 12 13 ( 3724 1lsu_A) ( 3144 1k2w_A) 0.9163 0.6470 3.4190 ( 0 25 55) 0 0.9163 0.6470 12 17 ( 3724 1lsu_A) ( 3192 1k6j_A) 0.9165 0.4583 2.7220 ( 0 22 55) 0 0.9165 0.4583 12 24 ( 3724 1lsu_A) ( 3257 1kbz_A) 0.5833 0.3684 3.5047 ( 0 4 21) 0 0.8323 0.5662 12 19 ( 3724 1lsu_A) ( 3385 1kol_A) 0.9120 0.6864 3.8651 ( 1 25 55) 0 0.9235 0.7293 12 16 ( 3724 1lsu_A) ( 3414 1ks9_A) 0.6796 0.5146 4.0518 ( 2 18 36) 0 0.6796 0.5146 12 17 ( 3724 1lsu_A) ( 3481 1kyq_A) 0.4999 0.5998 5.0939 ( 0 1 15) 0 0.6242 0.7086 12 10 ( 3724 1lsu_A) ( 3561 1l7d_A) 0.6661 0.5676 4.0055 ( 2 17 36) 0 0.8323 0.6663 12 15 ( 3724 1lsu_A) ( 3593 1lc0_A) 0.5833 0.5833 3.1451 ( 0 6 21) 0 0.8307 0.8307 12 12 ( 3724 1lsu_A) ( 3606 1ldn_A) 0.8979 0.8979 3.5538 ( 2 34 55) 0 0.8979 0.8979 12 12 ( 3724 1lsu_A) ( 3610 1leh_A) 0.5833 0.5384 3.4910 ( 0 3 21) 0 0.6664 0.6152 12 13 ( 3724 1lsu_A) ( 3633 1li4_A) 0.7304 0.6789 4.0062 ( 1 13 36) 0 0.7496 0.6920 12 13 ( 3724 1lsu_A) ( 3637 1lj8_A) 0.8118 0.5394 4.9711 ( 3 31 55) 0 0.8118 0.5394 12 20 ( 3724 1lsu_A) ( 3677 1lnq_A) 0.8905 0.6075 2.4843 ( 2 31 55) 0 0.8905 0.6398 12 18 ( 3724 1lsu_A) ( 3722 1lss_A) 0.9833 0.9833 2.1674 ( 2 39 66) 0 0.9833 0.9833 12 12 ( 3724 1lsu_A) ( 3724 1lsu_A) 1.0000 1.0000 0.0000 ( 0 41 66) 0 1.0000 1.0000 12 12 ( 3724 1lsu_A) ( 3734 1lu9_A) 0.9128 0.7839 4.3310 ( 1 27 55) 0 0.9154 0.7851 12 14 ( 3724 1lsu_A) ( 3854 1m66_A) 0.8300 0.6242 3.8120 ( 1 24 45) 0 0.8728 0.6762 12 16 ( 3724 1lsu_A) ( 4047 1mv8_A) 0.8124 0.6243 3.4217 ( 3 31 55) 0 0.8815 0.6404 12 17 ( 3724 1lsu_A) ( 4067 1mx3_A) 0.5833 0.5000 3.0148 ( 0 10 21) 0 0.9072 0.7813 12 14 ( 3724 1lsu_A) ( 4131 1n5d_A) 0.9165 0.6470 3.0326 ( 0 21 55) 0 0.9165 0.6470 12 17 ( 3724 1lsu_A) ( 4341 1np3_A) 0.7965 0.5812 3.0132 ( 2 25 45) 0 0.8303 0.5877 12 17 ( 3724 1lsu_A) ( 4351 1npy_A) 0.7902 0.7537 3.6807 ( 3 29 55) 0 0.9123 0.8432 12 13 ( 3724 1lsu_A) ( 4404 1nvm_B) 0.7653 0.7653 5.8816 ( 2 21 45) 0 0.8326 0.8326 12 12 ( 3724 1lsu_A) ( 4409 1nvt_A) 0.8053 0.8053 3.7598 ( 2 27 45) 0 0.8332 0.8332 12 12 ( 3724 1lsu_A) ( 4417 1nwc_A) 0.5833 0.6363 3.2954 ( 0 12 21) 0 0.8329 0.9085 12 11 ( 3724 1lsu_A) ( 4430 1nxq_A) 0.9163 0.6111 3.5158 ( 0 25 55) 0 0.9163 0.6111 12 18 ( 3724 1lsu_A) ( 4447 1nyt_A) 0.5675 0.5277 3.6433 ( 1 10 21) 0 0.8826 0.8228 12 13 ( 3724 1lsu_A) ( 4499 1o5i_A) 0.9163 0.6470 3.4944 ( 0 20 55) 0 0.9163 0.6470 12 17 ( 3724 1lsu_A) ( 4520 1o6z_A) 0.7964 0.8544 3.6316 ( 2 25 45) 0 0.7964 0.8544 12 11 ( 3724 1lsu_A) ( 4549 1o89_A) 0.8300 0.7670 3.7489 ( 1 24 45) 0 0.8332 0.7692 12 13 ( 3724 1lsu_A) ( 4573 1oaa ) 0.9163 0.6874 3.4827 ( 0 19 55) 0 0.9163 0.6874 12 16 ( 3724 1lsu_A) ( 4585 1obb_A) 0.8830 0.8230 3.5073 ( 2 29 55) 0 0.8830 0.8230 12 13 ( 3724 1lsu_A) ( 4588 1obf_O) 0.7001 0.7001 3.2320 ( 2 20 36) 0 0.7906 0.7906 12 12 ( 3724 1lsu_A) ( 4668 1oi7_A) 0.7908 0.9061 2.8243 ( 2 24 45) 0 0.8330 0.9992 12 10 ( 3724 1lsu_A) ( 4730 1ono_A) 0.5000 0.5000 3.6849 ( 0 6 15) 0 0.8275 0.8275 12 12 ( 3724 1lsu_A) ( 4739 1ooe_A) 0.8326 0.7140 4.6021 ( 0 19 45) 0 0.9038 0.7797 12 14 ( 3724 1lsu_A) ( 4765 1orr_A) 0.9107 0.4229 3.3725 ( 1 23 55) 0 0.9125 0.4230 12 26 ( 3724 1lsu_A) ( 4863 1p1j_A) 0.7442 0.3599 4.0364 ( 1 18 36) 0 0.7658 0.3979 12 25 ( 3724 1lsu_A) ( 4943 1p9l_A) 0.5833 0.6363 3.1573 ( 0 7 21) 0 0.9105 0.9905 12 11 ( 3724 1lsu_A) ( 5029 1pjq_A) 0.6666 0.7999 2.7072 ( 0 11 28) 0 0.6666 0.7999 12 10 ( 3724 1lsu_A) ( 5045 1pl7_A) 0.9160 0.8457 4.0150 ( 0 24 55) 0 0.9160 0.8457 12 13 ( 3724 1lsu_A) ( 5082 1pqw_A) 0.8260 0.6941 3.8926 ( 3 29 66) 0 0.9162 0.6941 12 16 ( 3724 1lsu_A) ( 5097 1psd_A) 0.5831 0.5831 5.3031 ( 0 8 21) 0 0.8324 0.8324 12 12 ( 3724 1lsu_A) ( 5140 1px0_A) 0.8331 0.6249 3.5845 ( 0 21 45) 0 0.9145 0.6870 12 16 ( 3724 1lsu_A) ( 5227 1q7c_A) 0.9163 0.6111 3.5401 ( 0 23 55) 0 0.9163 0.6111 12 18 ( 3724 1lsu_A) ( 5362 1qki_A) 0.6662 0.6662 3.0819 ( 2 17 36) 0 0.8329 0.8329 12 12 ( 3724 1lsu_A) ( 5387 1qmg_A) 0.7907 0.5215 3.6553 ( 2 24 45) 0 0.8560 0.5719 12 19 ( 3724 1lsu_A) ( 5406 1qor_A) 0.9132 0.8438 3.6646 ( 1 27 55) 0 0.9146 0.8448 12 13 ( 3724 1lsu_A) ( 5409 1qp8_A) 0.6666 0.6153 3.5306 ( 0 5 28) 0 0.9156 0.8454 12 13 ( 3724 1lsu_A) ( 5444 1qsg_A) 0.9127 0.6106 3.6549 ( 1 26 55) 0 0.9127 0.6106 12 18 ( 3724 1lsu_A) ( 5493 1qyc_A) 0.7775 0.4519 3.3742 ( 3 28 55) 0 0.9132 0.4582 12 24 ( 3724 1lsu_A) ( 5571 1r6d_A) 0.9134 0.4582 3.1199 ( 1 27 55) 0 0.9162 0.4583 12 24 ( 3724 1lsu_A) ( 5654 1rjw_A) 0.8282 0.6650 2.6641 ( 1 21 45) 0 0.9157 0.7330 12 15 ( 3724 1lsu_A) ( 5665 1rkx_A) 0.9129 0.5236 3.2880 ( 1 26 55) 0 0.9160 0.5238 12 21 ( 3724 1lsu_A) ( 5786 1say_A) 0.7550 0.7550 3.9081 ( 2 20 45) 0 0.8508 0.8508 12 12 ( 3724 1lsu_A) ( 5838 1spx_A) 0.9162 0.6470 3.6403 ( 0 21 55) 0 0.9162 0.6470 12 17 ( 3724 1lsu_A) ( 5877 1t2d_A) 0.8018 0.8405 3.8810 ( 3 30 55) 0 0.8018 0.8545 12 11 ( 3724 1lsu_A) ( 5942 1u8x_X) 0.8018 0.8018 3.9085 ( 3 30 55) 0 0.8018 0.8018 12 12 ( 3724 1lsu_A) ( 5954 1uay_A) 0.8331 0.6249 3.5601 ( 0 18 45) 0 0.9057 0.6848 12 16 ( 3724 1lsu_A) ( 6085 1ur5_A) 0.7965 0.7965 2.6847 ( 2 25 45) 0 0.8300 0.8300 12 12 ( 3724 1lsu_A) ( 6114 1uuf_A) 0.6660 0.5711 5.9749 ( 0 10 28) 0 0.8333 0.7142 12 14 ( 3724 1lsu_A) ( 6257 1vi2_A) 0.8089 0.7525 3.5048 ( 2 28 45) 0 0.8332 0.7692 12 13 ( 3724 1lsu_A) ( 6274 1vj0_A) 0.8119 0.6572 4.7053 ( 3 31 55) 0 0.9156 0.6873 12 16 ( 3724 1lsu_A) ( 6276 1vj1_A) 0.9080 0.7817 3.9133 ( 1 21 55) 0 0.9080 0.7817 12 14 ( 3724 1lsu_A) ( 6292 1vjp_A) 0.6908 0.6129 3.7096 ( 2 19 36) 0 0.8272 0.7114 12 14 ( 3724 1lsu_A) ( 6341 1xcb_A) 0.6152 0.7650 4.0817 ( 2 17 28) 0 0.6665 0.9987 12 8 ( 3724 1lsu_A) ( 6388 2ae1 ) 0.9162 0.6470 3.7618 ( 0 22 55) 0 0.9162 0.6470 12 17 ( 3724 1lsu_A) ( 6420 2cmd ) 0.7965 0.7965 2.8618 ( 2 25 45) 0 0.8301 0.8301 12 12 ( 3724 1lsu_A) ( 6426 2dap ) 0.7758 0.8775 3.9594 ( 2 22 45) 0 0.7758 0.8996 12 10 ( 3724 1lsu_A) ( 6497 2nac_A) 0.8139 0.7560 4.7038 ( 1 15 45) 0 0.8180 0.7588 12 13 ( 3724 1lsu_A) ( 6505 2pgd ) 0.7907 0.6934 3.3528 ( 2 24 45) 0 0.8273 0.7115 12 14 ( 3724 1lsu_A) ( 6627 6ldh ) 0.8830 0.8230 3.5236 ( 2 29 55) 0 0.8830 0.8230 12 13 -------------------------------------------------------------------------------------------------------------------------