------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3734 1lu9_A) ( 42 1a4i_A) 0.5000 0.7000 2.5560 ( 0 11 21) 0 0.6428 0.8999 14 10 ( 3734 1lu9_A) ( 265 1b16_A) 0.5000 0.4375 3.1288 ( 0 5 21) 0 0.7855 0.6874 14 16 ( 3734 1lu9_A) ( 312 1b7g_O) 0.3571 0.3846 4.2613 ( 0 3 10) 0 0.7651 0.8170 14 13 ( 3734 1lu9_A) ( 319 1b8p_A) 0.7139 0.9078 4.8305 ( 0 21 45) 0 0.7141 0.9084 14 11 ( 3734 1lu9_A) ( 352 1bdb ) 0.7139 0.5555 4.7415 ( 0 20 45) 0 0.7853 0.6110 14 18 ( 3734 1lu9_A) ( 377 1bg6 ) 0.5620 0.4719 3.4190 ( 3 21 36) 0 0.7447 0.5984 14 18 ( 3734 1lu9_A) ( 506 1c1d_A) 0.5209 0.5505 4.9444 ( 3 18 36) 0 0.6714 0.7505 14 12 ( 3734 1lu9_A) ( 707 1cyd_A) 0.7853 0.6110 4.4762 ( 0 25 55) 0 0.8545 0.6659 14 18 ( 3734 1lu9_A) ( 781 1db3_A) 0.4999 0.3182 5.7228 ( 0 6 21) 0 0.7836 0.4998 14 22 ( 3734 1lu9_A) ( 847 1dih ) 0.4286 0.8569 3.5710 ( 0 3 15) 0 0.4999 0.9983 14 7 ( 3734 1lu9_A) ( 873 1dlj_A) 0.5000 0.4375 3.7137 ( 0 14 21) 0 0.8767 0.7844 14 16 ( 3734 1lu9_A) ( 906 1dpg_A) 0.4286 0.4615 3.1186 ( 0 9 15) 0 0.7852 0.8454 14 13 ( 3734 1lu9_A) ( 972 1dxy ) 0.4286 0.3750 2.7871 ( 0 6 15) 0 0.7111 0.6234 14 16 ( 3734 1lu9_A) ( 1053 1e6u_A) 0.6424 0.4090 5.8849 ( 0 17 36) 0 0.6847 0.4512 14 22 ( 3734 1lu9_A) ( 1071 1e7w_A) 0.4286 0.3529 2.6605 ( 0 4 15) 0 0.7855 0.6470 14 17 ( 3734 1lu9_A) ( 1094 1ebf_A) 0.3571 0.4167 4.0499 ( 0 3 10) 0 0.6717 0.7510 14 12 ( 3734 1lu9_A) ( 1117 1edz_A) 0.6428 0.7499 3.0911 ( 0 24 36) 0 0.6428 0.7499 14 12 ( 3734 1lu9_A) ( 1189 1ek6_A) 0.5714 0.3636 3.7102 ( 0 11 28) 0 0.7852 0.4999 14 22 ( 3734 1lu9_A) ( 1219 1enp ) 0.7139 0.5555 4.7488 ( 0 26 45) 0 0.7852 0.6110 14 18 ( 3734 1lu9_A) ( 1221 1eny ) 0.5714 0.4706 3.3913 ( 0 14 28) 0 0.8520 0.7039 14 17 ( 3734 1lu9_A) ( 1242 1eq2_A) 0.5000 0.3182 3.7907 ( 0 9 21) 0 0.7815 0.5158 14 22 ( 3734 1lu9_A) ( 1355 1f14_A) 0.4286 0.4000 3.1414 ( 0 10 15) 0 0.7007 0.6569 14 15 ( 3734 1lu9_A) ( 1436 1f8f_A) 0.8560 0.8560 5.0939 ( 0 36 66) 0 0.8560 0.8560 14 14 ( 3734 1lu9_A) ( 1487 1ff9_A) 0.4286 0.4000 2.5945 ( 0 7 15) 0 0.8558 0.7990 14 15 ( 3734 1lu9_A) ( 1531 1fjh_A) 0.4284 0.3749 7.2712 ( 0 2 15) 0 0.8543 0.7485 14 16 ( 3734 1lu9_A) ( 1560 1fmc_A) 0.5000 0.4118 2.6827 ( 0 5 21) 0 0.8515 0.7037 14 17 ( 3734 1lu9_A) ( 1804 1gdh_A) 0.4963 0.4963 3.5734 ( 1 12 21) 0 0.7835 0.7835 14 14 ( 3734 1lu9_A) ( 1807 1gee_A) 0.5000 0.3500 2.7223 ( 0 6 21) 0 0.7855 0.5500 14 20 ( 3734 1lu9_A) ( 1809 1geg_A) 0.5000 0.4118 2.9900 ( 0 6 21) 0 0.7855 0.6470 14 17 ( 3734 1lu9_A) ( 1899 1gpj_A) 0.6899 0.7840 3.2680 ( 2 23 45) 0 0.7364 0.8292 14 12 ( 3734 1lu9_A) ( 1922 1gr0_A) 0.3571 0.3571 5.7066 ( 0 1 10) 0 0.7104 0.7104 14 14 ( 3734 1lu9_A) ( 1948 1gtm_A) 0.4999 0.4375 4.7642 ( 0 13 21) 0 0.7835 0.6864 14 16 ( 3734 1lu9_A) ( 1956 1gu7_A) 0.7142 0.5882 3.7178 ( 0 24 45) 0 0.8203 0.6911 14 17 ( 3734 1lu9_A) ( 2004 1gy8_A) 0.5000 0.3043 3.2418 ( 0 9 21) 0 0.7849 0.5093 14 23 ( 3734 1lu9_A) ( 2016 1gz3_A) 0.7856 0.6470 3.0298 ( 0 32 55) 0 0.7856 0.6470 14 17 ( 3734 1lu9_A) ( 2017 1gz6_A) 0.5000 0.3500 2.8492 ( 0 8 21) 0 0.8555 0.5997 14 20 ( 3734 1lu9_A) ( 2046 1h2b_A) 0.8562 0.8562 4.8196 ( 0 36 66) 0 0.8562 0.8562 14 14 ( 3734 1lu9_A) ( 2090 1h5q_A) 0.5000 0.3500 2.7985 ( 0 6 21) 0 0.7855 0.5500 14 20 ( 3734 1lu9_A) ( 2095 1h6d_A) 0.3571 0.3571 3.9339 ( 0 3 10) 0 0.7139 0.7139 14 14 ( 3734 1lu9_A) ( 2180 1hdc_A) 0.5000 0.4118 2.9953 ( 0 7 21) 0 0.7855 0.6470 14 17 ( 3734 1lu9_A) ( 2189 1hdo_A) 0.4285 0.4000 4.7495 ( 0 5 15) 0 0.8529 0.7970 14 15 ( 3734 1lu9_A) ( 2194 1het_A) 0.8565 0.7995 4.3991 ( 0 39 66) 0 0.8565 0.7995 14 15 ( 3734 1lu9_A) ( 2270 1hrd_A) 0.7132 0.6244 5.0331 ( 1 29 45) 0 0.7702 0.6794 14 16 ( 3734 1lu9_A) ( 2309 1hwx_A) 0.5714 0.4706 2.0220 ( 0 12 28) 0 0.7139 0.5881 14 17 ( 3734 1lu9_A) ( 2316 1hxh_A) 0.4286 0.3750 2.5817 ( 0 4 15) 0 0.7855 0.6874 14 16 ( 3734 1lu9_A) ( 2328 1hye_A) 0.6896 0.8362 4.9900 ( 2 23 45) 0 0.7138 0.9076 14 11 ( 3734 1lu9_A) ( 2330 1hyh_A) 0.6427 0.8175 4.6425 ( 0 17 36) 0 0.7139 0.9076 14 11 ( 3734 1lu9_A) ( 2368 1i24_A) 0.3571 0.1852 2.8617 ( 0 4 10) 0 0.8551 0.4444 14 27 ( 3734 1lu9_A) ( 2376 1i36_A) 0.4285 0.4000 4.6820 ( 0 10 15) 0 0.7848 0.7327 14 15 ( 3734 1lu9_A) ( 2463 1id1_A) 0.7728 0.8278 4.4611 ( 2 31 55) 0 0.8451 0.9059 14 13 ( 3734 1lu9_A) ( 2615 1iuk_A) 0.4285 0.4999 5.3024 ( 0 3 15) 0 0.7112 0.8267 14 12 ( 3734 1lu9_A) ( 2657 1iy8_A) 0.5714 0.4706 2.8161 ( 0 9 28) 0 0.7855 0.6470 14 17 ( 3734 1lu9_A) ( 2674 1iz0_A) 0.8565 0.7996 4.3157 ( 0 39 66) 0 0.8565 0.7996 14 15 ( 3734 1lu9_A) ( 2725 1j3v_A) 0.4285 0.4285 4.8302 ( 0 7 15) 0 0.7811 0.7811 14 14 ( 3734 1lu9_A) ( 2736 1j5p_A) 0.4286 0.6000 3.4883 ( 0 6 15) 0 0.6427 0.8991 14 10 ( 3734 1lu9_A) ( 2781 1ja9_A) 0.7852 0.6469 4.5810 ( 0 27 55) 0 0.7855 0.6470 14 17 ( 3734 1lu9_A) ( 2789 1jax_A) 0.4201 0.2985 5.2245 ( 1 8 15) 0 0.7820 0.5773 14 20 ( 3734 1lu9_A) ( 3017 1jqb_A) 0.8562 0.7993 4.8229 ( 0 40 66) 0 0.8562 0.7993 14 15 ( 3734 1lu9_A) ( 3059 1jtv_A) 0.5714 0.4444 3.3176 ( 0 14 28) 0 0.7855 0.6111 14 18 ( 3734 1lu9_A) ( 3072 1jvb_A) 0.7852 0.8455 4.5284 ( 0 33 55) 0 0.8467 0.9081 14 13 ( 3734 1lu9_A) ( 3144 1k2w_A) 0.5000 0.4118 2.7557 ( 0 8 21) 0 0.7855 0.6470 14 17 ( 3734 1lu9_A) ( 3192 1k6j_A) 0.4286 0.2500 3.5079 ( 0 7 15) 0 0.7845 0.4583 14 24 ( 3734 1lu9_A) ( 3257 1kbz_A) 0.4285 0.3158 6.5728 ( 0 3 15) 0 0.7851 0.5788 14 19 ( 3734 1lu9_A) ( 3385 1kol_A) 0.5710 0.4998 6.5076 ( 0 16 28) 0 0.8489 0.7457 14 16 ( 3734 1lu9_A) ( 3414 1ks9_A) 0.4286 0.3529 2.9864 ( 0 6 15) 0 0.7131 0.5878 14 17 ( 3734 1lu9_A) ( 3481 1kyq_A) 0.5000 0.7000 2.8531 ( 0 5 21) 0 0.6250 0.8188 14 10 ( 3734 1lu9_A) ( 3561 1l7d_A) 0.8239 0.7759 2.9724 ( 3 40 66) 0 0.8239 0.7759 14 15 ( 3734 1lu9_A) ( 3593 1lc0_A) 0.3571 0.4167 3.3048 ( 0 4 10) 0 0.7104 0.8251 14 12 ( 3734 1lu9_A) ( 3606 1ldn_A) 0.7742 0.8925 4.6782 ( 2 32 55) 0 0.7742 0.8925 14 12 ( 3734 1lu9_A) ( 3610 1leh_A) 0.5828 0.6006 5.0477 ( 4 27 45) 0 0.6565 0.6905 14 13 ( 3734 1lu9_A) ( 3633 1li4_A) 0.7696 0.8232 2.8673 ( 2 29 55) 0 0.7696 0.8232 14 13 ( 3734 1lu9_A) ( 3637 1lj8_A) 0.4631 0.3734 3.7460 ( 3 16 28) 0 0.7128 0.4998 14 20 ( 3734 1lu9_A) ( 3677 1lnq_A) 0.7843 0.6107 4.4467 ( 1 30 55) 0 0.8179 0.6547 14 18 ( 3734 1lu9_A) ( 3722 1lss_A) 0.7843 0.9136 4.1803 ( 1 29 55) 0 0.7843 0.9136 14 12 ( 3734 1lu9_A) ( 3724 1lsu_A) 0.7839 0.9128 4.3310 ( 1 27 55) 0 0.7851 0.9154 14 12 ( 3734 1lu9_A) ( 3734 1lu9_A) 1.0000 1.0000 0.0000 ( 0 69 91) 0 1.0000 1.0000 14 14 ( 3734 1lu9_A) ( 3854 1m66_A) 0.3688 0.3399 3.9365 ( 2 9 15) 0 0.8548 0.7488 14 16 ( 3734 1lu9_A) ( 4047 1mv8_A) 0.5000 0.4118 3.6177 ( 0 14 21) 0 0.9226 0.7624 14 17 ( 3734 1lu9_A) ( 4067 1mx3_A) 0.5000 0.5000 3.2988 ( 0 12 21) 0 0.7844 0.7844 14 14 ( 3734 1lu9_A) ( 4131 1n5d_A) 0.5000 0.4118 2.5369 ( 0 11 21) 0 0.7855 0.6470 14 17 ( 3734 1lu9_A) ( 4341 1np3_A) 0.5314 0.4539 2.7586 ( 2 15 28) 0 0.7711 0.6414 14 17 ( 3734 1lu9_A) ( 4351 1npy_A) 0.7857 0.8461 2.5887 ( 0 35 55) 0 0.8563 0.9218 14 13 ( 3734 1lu9_A) ( 4404 1nvm_B) 0.3571 0.4167 4.2432 ( 0 5 10) 0 0.7140 0.8327 14 12 ( 3734 1lu9_A) ( 4409 1nvt_A) 0.7137 0.8320 2.4679 ( 1 30 45) 0 0.7850 0.9151 14 12 ( 3734 1lu9_A) ( 4417 1nwc_A) 0.4286 0.5454 3.7783 ( 0 6 15) 0 0.7687 0.9476 14 11 ( 3734 1lu9_A) ( 4430 1nxq_A) 0.5000 0.3889 2.7386 ( 0 8 21) 0 0.7855 0.6111 14 18 ( 3734 1lu9_A) ( 4447 1nyt_A) 0.7851 0.8452 2.7831 ( 1 34 55) 0 0.8564 0.9220 14 13 ( 3734 1lu9_A) ( 4499 1o5i_A) 0.5714 0.4706 3.0649 ( 0 9 28) 0 0.8544 0.7048 14 17 ( 3734 1lu9_A) ( 4520 1o6z_A) 0.5501 0.6085 3.0820 ( 3 20 36) 0 0.6930 0.8454 14 11 ( 3734 1lu9_A) ( 4549 1o89_A) 0.7855 0.8458 3.8540 ( 0 35 55) 0 0.8562 0.9217 14 13 ( 3734 1lu9_A) ( 4573 1oaa ) 0.5000 0.4375 3.0954 ( 0 3 21) 0 0.7855 0.6874 14 16 ( 3734 1lu9_A) ( 4585 1obb_A) 0.6856 0.7290 3.4361 ( 2 22 45) 0 0.7609 0.8111 14 13 ( 3734 1lu9_A) ( 4588 1obf_O) 0.4285 0.4999 5.9048 ( 0 8 15) 0 0.7141 0.8330 14 12 ( 3734 1lu9_A) ( 4668 1oi7_A) 0.6428 0.8995 3.9210 ( 0 16 36) 0 0.7140 0.9985 14 10 ( 3734 1lu9_A) ( 4730 1ono_A) 0.4286 0.5000 3.4631 ( 0 3 15) 0 0.7243 0.8013 14 12 ( 3734 1lu9_A) ( 4739 1ooe_A) 0.7127 0.7127 6.8658 ( 0 22 45) 0 0.8521 0.8521 14 14 ( 3734 1lu9_A) ( 4765 1orr_A) 0.5000 0.2692 3.1161 ( 0 7 21) 0 0.7852 0.4231 14 26 ( 3734 1lu9_A) ( 4863 1p1j_A) 0.3369 0.1987 10.2935 ( 1 5 10) 0 0.7140 0.4000 14 25 ( 3734 1lu9_A) ( 4943 1p9l_A) 0.4285 0.5454 4.4423 ( 0 6 15) 0 0.7852 0.9984 14 11 ( 3734 1lu9_A) ( 5029 1pjq_A) 0.5714 0.7999 3.3029 ( 0 10 28) 0 0.5714 0.7999 14 10 ( 3734 1lu9_A) ( 5045 1pl7_A) 0.4285 0.4615 4.9690 ( 0 8 15) 0 0.8468 0.9083 14 13 ( 3734 1lu9_A) ( 5082 1pqw_A) 0.8561 0.7495 4.8904 ( 0 33 66) 0 0.8561 0.7495 14 16 ( 3734 1lu9_A) ( 5097 1psd_A) 0.4286 0.5000 2.7504 ( 0 6 15) 0 0.7244 0.8184 14 12 ( 3734 1lu9_A) ( 5140 1px0_A) 0.4286 0.3750 3.5628 ( 0 7 15) 0 0.7850 0.6871 14 16 ( 3734 1lu9_A) ( 5227 1q7c_A) 0.5000 0.3889 2.9566 ( 0 7 21) 0 0.7855 0.6111 14 18 ( 3734 1lu9_A) ( 5362 1qki_A) 0.3571 0.4167 3.3746 ( 0 5 10) 0 0.7140 0.8326 14 12 ( 3734 1lu9_A) ( 5387 1qmg_A) 0.4285 0.3158 5.8736 ( 0 6 15) 0 0.7094 0.5253 14 19 ( 3734 1lu9_A) ( 5406 1qor_A) 0.6426 0.6920 4.7495 ( 0 20 36) 0 0.7852 0.8454 14 13 ( 3734 1lu9_A) ( 5409 1qp8_A) 0.4999 0.5383 5.5744 ( 0 9 21) 0 0.7052 0.7563 14 13 ( 3734 1lu9_A) ( 5444 1qsg_A) 0.5000 0.3889 3.6372 ( 0 9 21) 0 0.7854 0.6110 14 18 ( 3734 1lu9_A) ( 5493 1qyc_A) 0.4285 0.2500 4.5576 ( 0 8 15) 0 0.7099 0.4200 14 24 ( 3734 1lu9_A) ( 5571 1r6d_A) 0.5000 0.2917 3.2321 ( 0 8 21) 0 0.7851 0.4583 14 24 ( 3734 1lu9_A) ( 5654 1rjw_A) 0.7141 0.6666 3.8976 ( 0 21 45) 0 0.8469 0.7927 14 15 ( 3734 1lu9_A) ( 5665 1rkx_A) 0.5629 0.3798 8.9908 ( 1 12 28) 0 0.7844 0.5236 14 21 ( 3734 1lu9_A) ( 5786 1say_A) 0.8268 0.9389 2.2739 ( 3 41 66) 0 0.8268 0.9389 14 12 ( 3734 1lu9_A) ( 5838 1spx_A) 0.5714 0.4706 2.9539 ( 0 9 28) 0 0.7855 0.6470 14 17 ( 3734 1lu9_A) ( 5877 1t2d_A) 0.5944 0.6491 4.3573 ( 3 21 45) 0 0.7110 0.8982 14 11 ( 3734 1lu9_A) ( 5942 1u8x_X) 0.7103 0.8249 5.0161 ( 1 19 45) 0 0.7120 0.8284 14 12 ( 3734 1lu9_A) ( 5954 1uay_A) 0.5000 0.4375 2.9557 ( 0 8 21) 0 0.7852 0.6872 14 16 ( 3734 1lu9_A) ( 6085 1ur5_A) 0.6894 0.7832 5.4046 ( 2 23 45) 0 0.7140 0.8326 14 12 ( 3734 1lu9_A) ( 6114 1uuf_A) 0.7141 0.7141 4.2344 ( 0 29 45) 0 0.8508 0.8508 14 14 ( 3734 1lu9_A) ( 6257 1vi2_A) 0.7498 0.7959 2.8375 ( 3 35 55) 0 0.8171 0.8672 14 13 ( 3734 1lu9_A) ( 6274 1vj0_A) 0.5714 0.5000 4.0158 ( 0 17 28) 0 0.7141 0.6249 14 16 ( 3734 1lu9_A) ( 6276 1vj1_A) 0.7142 0.7142 3.3161 ( 0 25 45) 0 0.8488 0.8488 14 14 ( 3734 1lu9_A) ( 6292 1vjp_A) 0.2857 0.2857 3.4389 ( 0 3 6) 0 0.7847 0.7847 14 14 ( 3734 1lu9_A) ( 6341 1xcb_A) 0.5713 0.9975 5.0814 ( 0 14 28) 0 0.5713 0.9975 14 8 ( 3734 1lu9_A) ( 6388 2ae1 ) 0.5000 0.4118 2.5272 ( 0 6 21) 0 0.8543 0.7048 14 17 ( 3734 1lu9_A) ( 6420 2cmd ) 0.5944 0.6326 4.2357 ( 3 21 45) 0 0.6933 0.7905 14 12 ( 3734 1lu9_A) ( 6426 2dap ) 0.6427 0.8992 4.3860 ( 0 16 36) 0 0.7136 0.9964 14 10 ( 3734 1lu9_A) ( 6497 2nac_A) 0.6856 0.7290 2.6699 ( 2 22 45) 0 0.7139 0.7687 14 13 ( 3734 1lu9_A) ( 6505 2pgd ) 0.4286 0.4286 4.2808 ( 0 6 15) 0 0.7840 0.7840 14 14 ( 3734 1lu9_A) ( 6627 6ldh ) 0.6899 0.7348 3.2888 ( 2 23 45) 0 0.7125 0.7666 14 13 -------------------------------------------------------------------------------------------------------------------------