------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4341 1np3_A) ( 42 1a4i_A) 0.3475 0.5386 1.6000 ( 1 7 15) 0 0.4179 0.6999 17 10 ( 4341 1np3_A) ( 265 1b16_A) 0.4116 0.4373 7.9707 ( 0 7 21) 0 0.6465 0.6868 17 16 ( 4341 1np3_A) ( 312 1b7g_O) 0.4180 0.4377 4.9222 ( 6 27 45) 0 0.6009 0.7110 17 13 ( 4341 1np3_A) ( 319 1b8p_A) 0.6432 0.9681 3.9578 ( 2 33 55) 0 0.6466 0.9959 17 11 ( 4341 1np3_A) ( 352 1bdb ) 0.3529 0.3333 5.8761 ( 0 2 15) 0 0.5290 0.4997 17 18 ( 4341 1np3_A) ( 377 1bg6 ) 0.8227 0.7771 3.4129 ( 2 69 91) 0 0.8227 0.7771 17 18 ( 4341 1np3_A) ( 506 1c1d_A) 0.4117 0.5832 4.7841 ( 0 8 21) 0 0.4704 0.6658 17 12 ( 4341 1np3_A) ( 707 1cyd_A) 0.2941 0.2778 4.9406 ( 0 5 10) 0 0.5880 0.5554 17 18 ( 4341 1np3_A) ( 781 1db3_A) 0.3529 0.2727 6.8151 ( 0 5 15) 0 0.6409 0.4983 17 22 ( 4341 1np3_A) ( 847 1dih ) 0.4118 0.9991 3.9450 ( 0 9 21) 0 0.4118 0.9991 17 7 ( 4341 1np3_A) ( 873 1dlj_A) 0.8628 0.9114 3.4019 ( 5 80 105) 0 0.8734 0.9255 17 16 ( 4341 1np3_A) ( 906 1dpg_A) 0.3529 0.4615 3.8101 ( 0 8 15) 0 0.5292 0.6915 17 13 ( 4341 1np3_A) ( 972 1dxy ) 0.4118 0.4375 4.0037 ( 0 12 21) 0 0.5716 0.6029 17 16 ( 4341 1np3_A) ( 1053 1e6u_A) 0.3529 0.2727 8.1272 ( 0 6 15) 0 0.5870 0.4803 17 22 ( 4341 1np3_A) ( 1071 1e7w_A) 0.3529 0.3529 5.6559 ( 0 2 15) 0 0.5638 0.5638 17 17 ( 4341 1np3_A) ( 1094 1ebf_A) 0.3529 0.5000 4.0069 ( 0 6 15) 0 0.4116 0.5825 17 12 ( 4341 1np3_A) ( 1117 1edz_A) 0.4700 0.6635 3.3641 ( 1 18 28) 0 0.4700 0.6635 17 12 ( 4341 1np3_A) ( 1189 1ek6_A) 0.3529 0.2727 3.5010 ( 0 6 15) 0 0.5880 0.4545 17 22 ( 4341 1np3_A) ( 1219 1enp ) 0.2941 0.2778 5.8345 ( 0 2 10) 0 0.5293 0.4999 17 18 ( 4341 1np3_A) ( 1221 1eny ) 0.4117 0.4117 5.2634 ( 0 6 21) 0 0.6095 0.6095 17 17 ( 4341 1np3_A) ( 1242 1eq2_A) 0.2941 0.2273 4.2629 ( 0 4 10) 0 0.4936 0.4513 17 22 ( 4341 1np3_A) ( 1355 1f14_A) 0.7610 0.8598 3.6089 ( 3 62 78) 0 0.8146 0.9169 17 15 ( 4341 1np3_A) ( 1436 1f8f_A) 0.4705 0.5712 5.4683 ( 0 13 28) 0 0.5880 0.7137 17 14 ( 4341 1np3_A) ( 1487 1ff9_A) 0.4467 0.4540 5.0516 ( 9 42 66) 0 0.5294 0.6000 17 15 ( 4341 1np3_A) ( 1531 1fjh_A) 0.3529 0.3749 7.1488 ( 0 2 15) 0 0.4704 0.4998 17 16 ( 4341 1np3_A) ( 1560 1fmc_A) 0.2941 0.2941 5.6800 ( 0 1 10) 0 0.5392 0.5392 17 17 ( 4341 1np3_A) ( 1804 1gdh_A) 0.2941 0.3571 3.9450 ( 0 3 10) 0 0.5606 0.6495 17 14 ( 4341 1np3_A) ( 1807 1gee_A) 0.3474 0.2975 5.2618 ( 1 7 15) 0 0.5877 0.4998 17 20 ( 4341 1np3_A) ( 1809 1geg_A) 0.2941 0.2941 4.8523 ( 0 3 10) 0 0.5876 0.5876 17 17 ( 4341 1np3_A) ( 1899 1gpj_A) 0.5294 0.7499 3.0271 ( 0 20 36) 0 0.5294 0.7499 17 12 ( 4341 1np3_A) ( 1922 1gr0_A) 0.3459 0.3518 4.8736 ( 7 25 45) 0 0.5834 0.6515 17 14 ( 4341 1np3_A) ( 1948 1gtm_A) 0.3529 0.3750 4.5598 ( 0 11 15) 0 0.4500 0.4587 17 16 ( 4341 1np3_A) ( 1956 1gu7_A) 0.4706 0.4706 3.6160 ( 0 14 28) 0 0.5968 0.5968 17 17 ( 4341 1np3_A) ( 2004 1gy8_A) 0.3529 0.2609 5.1999 ( 0 2 15) 0 0.5857 0.4622 17 23 ( 4341 1np3_A) ( 2016 1gz3_A) 0.2941 0.2941 3.2502 ( 0 2 10) 0 0.6332 0.6332 17 17 ( 4341 1np3_A) ( 2017 1gz6_A) 0.3529 0.3000 7.2393 ( 0 4 15) 0 0.6703 0.5833 17 20 ( 4341 1np3_A) ( 2046 1h2b_A) 0.3529 0.4286 2.8478 ( 0 6 15) 0 0.6339 0.7529 17 14 ( 4341 1np3_A) ( 2090 1h5q_A) 0.3529 0.3000 3.4491 ( 0 5 15) 0 0.4890 0.4581 17 20 ( 4341 1np3_A) ( 2095 1h6d_A) 0.4694 0.5684 4.1803 ( 1 15 28) 0 0.5173 0.6128 17 14 ( 4341 1np3_A) ( 2180 1hdc_A) 0.3529 0.3529 2.4583 ( 0 6 15) 0 0.4931 0.4931 17 17 ( 4341 1np3_A) ( 2189 1hdo_A) 0.3529 0.4000 2.7399 ( 0 10 15) 0 0.6439 0.7274 17 15 ( 4341 1np3_A) ( 2194 1het_A) 0.5878 0.6658 6.3594 ( 0 26 45) 0 0.6317 0.7056 17 15 ( 4341 1np3_A) ( 2270 1hrd_A) 0.2941 0.3125 3.6416 ( 0 4 10) 0 0.4994 0.5144 17 16 ( 4341 1np3_A) ( 2309 1hwx_A) 0.3529 0.3529 2.8526 ( 0 8 15) 0 0.3728 0.3728 17 17 ( 4341 1np3_A) ( 2316 1hxh_A) 0.3529 0.3750 5.1497 ( 0 3 15) 0 0.4705 0.4999 17 16 ( 4341 1np3_A) ( 2328 1hye_A) 0.6452 0.9842 3.8834 ( 2 40 55) 0 0.6452 0.9842 17 11 ( 4341 1np3_A) ( 2330 1hyh_A) 0.6454 0.9858 3.4604 ( 2 41 55) 0 0.6467 0.9968 17 11 ( 4341 1np3_A) ( 2368 1i24_A) 0.3529 0.2222 4.7355 ( 0 3 15) 0 0.5493 0.4185 17 27 ( 4341 1np3_A) ( 2376 1i36_A) 0.7644 0.8661 3.7748 ( 1 53 78) 0 0.8229 0.9322 17 15 ( 4341 1np3_A) ( 2463 1id1_A) 0.6432 0.8319 3.5744 ( 2 33 55) 0 0.6461 0.8427 17 13 ( 4341 1np3_A) ( 2615 1iuk_A) 0.5316 0.6326 4.2065 ( 4 28 45) 0 0.5822 0.8013 17 12 ( 4341 1np3_A) ( 2657 1iy8_A) 0.3529 0.3529 6.0169 ( 0 1 15) 0 0.5878 0.5878 17 17 ( 4341 1np3_A) ( 2674 1iz0_A) 0.2941 0.3333 4.6339 ( 0 4 10) 0 0.5873 0.6649 17 15 ( 4341 1np3_A) ( 2725 1j3v_A) 0.7632 0.9246 4.1438 ( 2 54 78) 0 0.8217 0.9953 17 14 ( 4341 1np3_A) ( 2736 1j5p_A) 0.5211 0.8072 4.8122 ( 2 21 36) 0 0.5294 0.8994 17 10 ( 4341 1np3_A) ( 2781 1ja9_A) 0.4832 0.4832 4.7175 ( 2 13 36) 0 0.5291 0.5291 17 17 ( 4341 1np3_A) ( 2789 1jax_A) 0.8124 0.6950 3.4109 ( 4 68 91) 0 0.8718 0.7453 17 20 ( 4341 1np3_A) ( 3017 1jqb_A) 0.3529 0.4000 2.7664 ( 0 7 15) 0 0.4932 0.5386 17 15 ( 4341 1np3_A) ( 3059 1jtv_A) 0.3529 0.3333 3.3800 ( 0 5 15) 0 0.6255 0.5946 17 18 ( 4341 1np3_A) ( 3072 1jvb_A) 0.5876 0.7669 5.7212 ( 1 27 45) 0 0.5876 0.7669 17 13 ( 4341 1np3_A) ( 3144 1k2w_A) 0.3529 0.3529 2.8344 ( 0 6 15) 0 0.5281 0.5281 17 17 ( 4341 1np3_A) ( 3192 1k6j_A) 0.2941 0.2083 2.8007 ( 0 3 10) 0 0.5872 0.4221 17 24 ( 4341 1np3_A) ( 3257 1kbz_A) 0.2941 0.2632 5.1510 ( 0 1 10) 0 0.5869 0.5256 17 19 ( 4341 1np3_A) ( 3385 1kol_A) 0.5606 0.5886 3.7448 ( 3 26 45) 0 0.5881 0.6249 17 16 ( 4341 1np3_A) ( 3414 1ks9_A) 0.7599 0.7599 3.8703 ( 3 58 78) 0 0.7599 0.7599 17 17 ( 4341 1np3_A) ( 3481 1kyq_A) 0.2941 0.5000 3.8802 ( 0 4 10) 0 0.5278 0.8783 17 10 ( 4341 1np3_A) ( 3561 1l7d_A) 0.3135 0.3363 5.6761 ( 2 8 15) 0 0.5811 0.6536 17 15 ( 4341 1np3_A) ( 3593 1lc0_A) 0.4706 0.6666 3.6430 ( 0 16 28) 0 0.4993 0.6666 17 12 ( 4341 1np3_A) ( 3606 1ldn_A) 0.6470 0.9163 3.5049 ( 0 38 55) 0 0.6470 0.9163 17 12 ( 4341 1np3_A) ( 3610 1leh_A) 0.4118 0.5385 2.7400 ( 0 8 21) 0 0.4929 0.6051 17 13 ( 4341 1np3_A) ( 3633 1li4_A) 0.4118 0.5385 1.4855 ( 0 8 21) 0 0.4594 0.5603 17 13 ( 4341 1np3_A) ( 3637 1lj8_A) 0.7293 0.6334 5.8486 ( 5 57 78) 0 0.7759 0.6774 17 20 ( 4341 1np3_A) ( 3677 1lnq_A) 0.6953 0.6586 5.5744 ( 3 43 66) 0 0.6953 0.6586 17 18 ( 4341 1np3_A) ( 3722 1lss_A) 0.6242 0.8123 3.9617 ( 3 31 55) 0 0.6242 0.8123 17 12 ( 4341 1np3_A) ( 3724 1lsu_A) 0.5812 0.7965 3.0132 ( 2 25 45) 0 0.5877 0.8303 17 12 ( 4341 1np3_A) ( 3734 1lu9_A) 0.4539 0.5314 2.7586 ( 2 15 28) 0 0.6414 0.7711 17 14 ( 4341 1np3_A) ( 3854 1m66_A) 0.9045 0.9515 3.9442 ( 6 88 120) 0 0.9045 0.9515 17 16 ( 4341 1np3_A) ( 4047 1mv8_A) 0.8387 0.8387 3.7280 ( 6 77 105) 0 0.8761 0.8761 17 17 ( 4341 1np3_A) ( 4067 1mx3_A) 0.2941 0.3571 4.0430 ( 0 2 10) 0 0.5864 0.7095 17 14 ( 4341 1np3_A) ( 4131 1n5d_A) 0.3529 0.3529 2.8963 ( 0 7 15) 0 0.6416 0.6416 17 17 ( 4341 1np3_A) ( 4341 1np3_A) 1.0000 1.0000 0.0000 ( 0 114 136) 0 1.0000 1.0000 17 17 ( 4341 1np3_A) ( 4351 1npy_A) 0.4706 0.6154 2.2832 ( 0 17 28) 0 0.5876 0.7669 17 13 ( 4341 1np3_A) ( 4404 1nvm_B) 0.5145 0.6791 5.6797 ( 2 18 36) 0 0.5877 0.8304 17 12 ( 4341 1np3_A) ( 4409 1nvt_A) 0.4705 0.6664 4.6856 ( 0 18 28) 0 0.5881 0.8324 17 12 ( 4341 1np3_A) ( 4417 1nwc_A) 0.4869 0.6084 4.0194 ( 3 20 36) 0 0.5967 0.8178 17 11 ( 4341 1np3_A) ( 4430 1nxq_A) 0.3529 0.3333 2.7229 ( 0 5 15) 0 0.5712 0.5426 17 18 ( 4341 1np3_A) ( 4447 1nyt_A) 0.5294 0.6923 3.1027 ( 0 20 36) 0 0.5878 0.7674 17 13 ( 4341 1np3_A) ( 4499 1o5i_A) 0.2941 0.2941 3.8232 ( 0 3 10) 0 0.5880 0.5880 17 17 ( 4341 1np3_A) ( 4520 1o6z_A) 0.6469 0.9985 3.5495 ( 1 41 55) 0 0.6469 0.9985 17 11 ( 4341 1np3_A) ( 4549 1o89_A) 0.5564 0.6710 4.1776 ( 3 25 45) 0 0.6382 0.8145 17 13 ( 4341 1np3_A) ( 4573 1oaa ) 0.3609 0.3637 5.7933 ( 4 15 45) 0 0.6160 0.6467 17 16 ( 4341 1np3_A) ( 4585 1obb_A) 0.3529 0.4615 5.4668 ( 0 3 15) 0 0.7057 0.9222 17 13 ( 4341 1np3_A) ( 4588 1obf_O) 0.3921 0.4082 4.6181 ( 7 29 45) 0 0.6213 0.8015 17 12 ( 4341 1np3_A) ( 4668 1oi7_A) 0.4706 0.7999 3.0762 ( 0 18 28) 0 0.5873 0.9876 17 10 ( 4341 1np3_A) ( 4730 1ono_A) 0.5287 0.7461 4.1577 ( 1 20 36) 0 0.5765 0.7747 17 12 ( 4341 1np3_A) ( 4739 1ooe_A) 0.2941 0.3571 3.3455 ( 0 3 10) 0 0.6873 0.8114 17 14 ( 4341 1np3_A) ( 4765 1orr_A) 0.3529 0.2308 2.8865 ( 0 3 15) 0 0.5564 0.4211 17 26 ( 4341 1np3_A) ( 4863 1p1j_A) 0.2353 0.1600 5.7058 ( 0 1 6) 0 0.5172 0.3581 17 25 ( 4341 1np3_A) ( 4943 1p9l_A) 0.3529 0.5452 5.8540 ( 0 7 15) 0 0.5281 0.8073 17 11 ( 4341 1np3_A) ( 5029 1pjq_A) 0.5067 0.7085 3.4875 ( 2 16 36) 0 0.5067 0.7999 17 10 ( 4341 1np3_A) ( 5045 1pl7_A) 0.3529 0.4614 6.1358 ( 0 5 15) 0 0.6213 0.7657 17 13 ( 4341 1np3_A) ( 5082 1pqw_A) 0.4118 0.4375 3.2446 ( 0 12 21) 0 0.5312 0.5623 17 16 ( 4341 1np3_A) ( 5097 1psd_A) 0.3529 0.4998 5.9575 ( 0 7 15) 0 0.5293 0.7492 17 12 ( 4341 1np3_A) ( 5140 1px0_A) 0.2941 0.3125 8.0364 ( 0 4 10) 0 0.5880 0.6247 17 16 ( 4341 1np3_A) ( 5227 1q7c_A) 0.2941 0.2778 5.2753 ( 0 2 10) 0 0.5876 0.5550 17 18 ( 4341 1np3_A) ( 5362 1qki_A) 0.3529 0.4998 6.5133 ( 0 8 15) 0 0.5191 0.6983 17 12 ( 4341 1np3_A) ( 5387 1qmg_A) 0.8712 0.8124 2.6649 ( 10 108 136) 0 0.8712 0.8124 17 19 ( 4341 1np3_A) ( 5406 1qor_A) 0.4706 0.6153 3.7884 ( 0 14 28) 0 0.6097 0.7676 17 13 ( 4341 1np3_A) ( 5409 1qp8_A) 0.3529 0.4614 6.0258 ( 0 6 15) 0 0.4575 0.5708 17 13 ( 4341 1np3_A) ( 5444 1qsg_A) 0.4116 0.3888 7.2062 ( 0 10 21) 0 0.5293 0.4999 17 18 ( 4341 1np3_A) ( 5493 1qyc_A) 0.3529 0.2500 2.9222 ( 0 6 15) 0 0.6242 0.4540 17 24 ( 4341 1np3_A) ( 5571 1r6d_A) 0.3529 0.2500 6.0321 ( 0 3 15) 0 0.5313 0.4045 17 24 ( 4341 1np3_A) ( 5654 1rjw_A) 0.5880 0.6662 5.6190 ( 0 28 45) 0 0.5880 0.6662 17 15 ( 4341 1np3_A) ( 5665 1rkx_A) 0.3497 0.2846 3.2015 ( 1 8 15) 0 0.5271 0.4442 17 21 ( 4341 1np3_A) ( 5786 1say_A) 0.2941 0.4167 3.9081 ( 0 3 10) 0 0.6324 0.8447 17 12 ( 4341 1np3_A) ( 5838 1spx_A) 0.2941 0.2941 5.4935 ( 0 1 10) 0 0.5293 0.5293 17 17 ( 4341 1np3_A) ( 5877 1t2d_A) 0.6446 0.9791 3.6690 ( 2 37 55) 0 0.6446 0.9791 17 11 ( 4341 1np3_A) ( 5942 1u8x_X) 0.6446 0.9028 4.0060 ( 2 37 55) 0 0.6446 0.9028 17 12 ( 4341 1np3_A) ( 5954 1uay_A) 0.2941 0.3125 6.5952 ( 0 3 10) 0 0.6239 0.6568 17 16 ( 4341 1np3_A) ( 6085 1ur5_A) 0.6469 0.9157 3.1608 ( 1 39 55) 0 0.6469 0.9157 17 12 ( 4341 1np3_A) ( 6114 1uuf_A) 0.3496 0.4201 6.8461 ( 1 8 15) 0 0.6391 0.7654 17 14 ( 4341 1np3_A) ( 6257 1vi2_A) 0.5291 0.6913 2.8079 ( 1 25 36) 0 0.5881 0.7688 17 13 ( 4341 1np3_A) ( 6274 1vj0_A) 0.4117 0.4374 5.3728 ( 0 12 21) 0 0.4869 0.5077 17 16 ( 4341 1np3_A) ( 6276 1vj1_A) 0.5800 0.6934 3.7156 ( 2 24 45) 0 0.6030 0.7127 17 14 ( 4341 1np3_A) ( 6292 1vjp_A) 0.2941 0.3570 8.6822 ( 0 7 10) 0 0.5280 0.6392 17 14 ( 4341 1np3_A) ( 6341 1xcb_A) 0.4118 0.8746 3.6801 ( 0 13 21) 0 0.4118 0.8749 17 8 ( 4341 1np3_A) ( 6388 2ae1 ) 0.3529 0.3529 5.4533 ( 0 3 15) 0 0.5314 0.5314 17 17 ( 4341 1np3_A) ( 6420 2cmd ) 0.6451 0.9056 3.2231 ( 2 39 55) 0 0.6451 0.9056 17 12 ( 4341 1np3_A) ( 6426 2dap ) 0.5878 0.9944 4.5151 ( 1 28 45) 0 0.5878 0.9944 17 10 ( 4341 1np3_A) ( 6497 2nac_A) 0.4706 0.6153 3.8349 ( 0 15 28) 0 0.5008 0.6153 17 13 ( 4341 1np3_A) ( 6505 2pgd ) 0.7201 0.8269 3.1973 ( 5 53 78) 0 0.7445 0.8789 17 14 ( 4341 1np3_A) ( 6627 6ldh ) 0.6980 0.8946 3.7605 ( 3 46 66) 0 0.6980 0.8946 17 13 -------------------------------------------------------------------------------------------------------------------------