------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4430 1nxq_A) ( 42 1a4i_A) 0.2778 0.4999 4.8262 ( 0 2 10) 0 0.4444 0.7998 18 10 ( 4430 1nxq_A) ( 265 1b16_A) 0.8318 0.9348 2.8121 ( 2 58 105) 0 0.8318 0.9348 18 16 ( 4430 1nxq_A) ( 312 1b7g_O) 0.5543 0.7627 3.8794 ( 1 18 45) 0 0.6630 0.9049 18 13 ( 4430 1nxq_A) ( 319 1b8p_A) 0.6105 0.9930 4.9960 ( 1 27 55) 0 0.6106 0.9935 18 11 ( 4430 1nxq_A) ( 352 1bdb ) 0.8881 0.8881 2.5375 ( 2 75 120) 0 0.8881 0.8881 18 18 ( 4430 1nxq_A) ( 377 1bg6 ) 0.5912 0.5912 5.5798 ( 3 30 55) 0 0.5912 0.5912 18 18 ( 4430 1nxq_A) ( 506 1c1d_A) 0.5534 0.8175 7.3743 ( 1 17 45) 0 0.5542 0.8234 18 12 ( 4430 1nxq_A) ( 707 1cyd_A) 0.9975 0.9975 2.4042 ( 3 96 153) 0 0.9975 0.9975 18 18 ( 4430 1nxq_A) ( 781 1db3_A) 0.7222 0.5909 2.7347 ( 0 40 78) 0 0.7561 0.6281 18 22 ( 4430 1nxq_A) ( 847 1dih ) 0.3889 0.9991 3.9591 ( 0 2 21) 0 0.3889 0.9993 18 7 ( 4430 1nxq_A) ( 873 1dlj_A) 0.3489 0.3507 5.1902 ( 13 46 78) 0 0.5551 0.6242 18 16 ( 4430 1nxq_A) ( 906 1dpg_A) 0.6665 0.9223 4.2349 ( 0 35 66) 0 0.6665 0.9223 18 13 ( 4430 1nxq_A) ( 972 1dxy ) 0.3332 0.3747 9.9380 ( 0 7 15) 0 0.6652 0.7473 18 16 ( 4430 1nxq_A) ( 1053 1e6u_A) 0.4590 0.4385 4.6857 ( 10 48 78) 0 0.6104 0.4998 18 22 ( 4430 1nxq_A) ( 1071 1e7w_A) 0.9444 0.9999 1.5675 ( 1 90 136) 0 0.9444 0.9999 18 17 ( 4430 1nxq_A) ( 1094 1ebf_A) 0.3333 0.4996 7.8293 ( 0 2 15) 0 0.4924 0.6999 18 12 ( 4430 1nxq_A) ( 1117 1edz_A) 0.3333 0.5000 3.7086 ( 0 1 15) 0 0.4886 0.6789 18 12 ( 4430 1nxq_A) ( 1189 1ek6_A) 0.7755 0.6355 4.0420 ( 2 49 91) 0 0.7755 0.6355 18 22 ( 4430 1nxq_A) ( 1219 1enp ) 0.9443 0.9443 2.6442 ( 0 96 136) 0 0.9443 0.9443 18 18 ( 4430 1nxq_A) ( 1221 1eny ) 0.9367 0.9898 2.9216 ( 4 89 136) 0 0.9367 0.9898 18 17 ( 4430 1nxq_A) ( 1242 1eq2_A) 0.7220 0.5908 3.2392 ( 1 41 78) 0 0.7220 0.6088 18 22 ( 4430 1nxq_A) ( 1355 1f14_A) 0.3333 0.3999 6.6898 ( 0 6 15) 0 0.5553 0.6661 18 15 ( 4430 1nxq_A) ( 1436 1f8f_A) 0.4444 0.5714 2.8743 ( 0 8 28) 0 0.6653 0.8524 18 14 ( 4430 1nxq_A) ( 1487 1ff9_A) 0.6662 0.7989 3.6864 ( 1 31 66) 0 0.7188 0.8583 18 15 ( 4430 1nxq_A) ( 1531 1fjh_A) 0.7222 0.8124 2.7621 ( 0 45 78) 0 0.7763 0.8724 18 16 ( 4430 1nxq_A) ( 1560 1fmc_A) 0.9438 0.9991 1.8651 ( 2 83 136) 0 0.9438 0.9991 18 17 ( 4430 1nxq_A) ( 1804 1gdh_A) 0.3333 0.4286 4.1824 ( 0 8 15) 0 0.6591 0.8317 18 14 ( 4430 1nxq_A) ( 1807 1gee_A) 0.9939 0.8964 1.6702 ( 4 101 153) 0 0.9939 0.8964 18 20 ( 4430 1nxq_A) ( 1809 1geg_A) 0.9414 0.9959 2.8984 ( 3 85 136) 0 0.9414 0.9959 18 17 ( 4430 1nxq_A) ( 1899 1gpj_A) 0.3333 0.4999 5.0740 ( 0 3 15) 0 0.6069 0.8866 18 12 ( 4430 1nxq_A) ( 1922 1gr0_A) 0.6098 0.7813 4.9130 ( 1 21 55) 0 0.6098 0.7813 18 14 ( 4430 1nxq_A) ( 1948 1gtm_A) 0.3333 0.3750 5.3030 ( 0 4 15) 0 0.5552 0.6244 18 16 ( 4430 1nxq_A) ( 1956 1gu7_A) 0.3333 0.3529 4.6228 ( 0 6 15) 0 0.6659 0.7049 18 17 ( 4430 1nxq_A) ( 2004 1gy8_A) 0.7190 0.5643 4.1204 ( 2 40 78) 0 0.7190 0.5802 18 23 ( 4430 1nxq_A) ( 2016 1gz3_A) 0.3333 0.3529 3.1683 ( 0 2 15) 0 0.6095 0.6449 18 17 ( 4430 1nxq_A) ( 2017 1gz6_A) 0.8073 0.7342 2.5249 ( 4 55 105) 0 0.8521 0.7775 18 20 ( 4430 1nxq_A) ( 2046 1h2b_A) 0.3889 0.5000 2.6198 ( 0 5 21) 0 0.6663 0.8558 18 14 ( 4430 1nxq_A) ( 2090 1h5q_A) 0.9939 0.8964 1.7054 ( 4 101 153) 0 0.9939 0.8964 18 20 ( 4430 1nxq_A) ( 2095 1h6d_A) 0.6109 0.7851 4.8339 ( 0 22 55) 0 0.6548 0.8184 18 14 ( 4430 1nxq_A) ( 2180 1hdc_A) 0.8880 0.9399 1.2525 ( 2 70 120) 0 0.8880 0.9399 18 17 ( 4430 1nxq_A) ( 2189 1hdo_A) 0.6664 0.7992 2.9004 ( 1 33 66) 0 0.6664 0.7992 18 15 ( 4430 1nxq_A) ( 2194 1het_A) 0.3889 0.4667 2.5728 ( 0 8 21) 0 0.6663 0.7991 18 15 ( 4430 1nxq_A) ( 2270 1hrd_A) 0.3889 0.4375 5.3094 ( 0 7 21) 0 0.5611 0.6248 18 16 ( 4430 1nxq_A) ( 2309 1hwx_A) 0.2778 0.2941 5.6772 ( 0 4 10) 0 0.6231 0.6500 18 17 ( 4430 1nxq_A) ( 2316 1hxh_A) 0.8888 0.9999 1.0488 ( 1 70 120) 0 0.8888 0.9999 18 16 ( 4430 1nxq_A) ( 2328 1hye_A) 0.6055 0.9417 5.1966 ( 2 28 55) 0 0.6100 0.9875 18 11 ( 4430 1nxq_A) ( 2330 1hyh_A) 0.5822 0.7925 5.2075 ( 3 27 55) 0 0.6101 0.9886 18 11 ( 4430 1nxq_A) ( 2368 1i24_A) 0.8031 0.5513 4.5009 ( 4 53 105) 0 0.8031 0.5513 18 27 ( 4430 1nxq_A) ( 2376 1i36_A) 0.2778 0.3333 2.6199 ( 0 2 10) 0 0.5554 0.6662 18 15 ( 4430 1nxq_A) ( 2463 1id1_A) 0.6111 0.8459 3.5795 ( 0 26 55) 0 0.6111 0.8459 18 13 ( 4430 1nxq_A) ( 2615 1iuk_A) 0.3333 0.5000 4.4208 ( 0 6 15) 0 0.5820 0.8122 18 12 ( 4430 1nxq_A) ( 2657 1iy8_A) 0.9444 0.9999 2.1500 ( 0 82 136) 0 0.9444 0.9999 18 17 ( 4430 1nxq_A) ( 2674 1iz0_A) 0.3889 0.4666 3.9939 ( 0 5 21) 0 0.6664 0.7993 18 15 ( 4430 1nxq_A) ( 2725 1j3v_A) 0.3333 0.4286 3.5557 ( 0 4 15) 0 0.5851 0.7105 18 14 ( 4430 1nxq_A) ( 2736 1j5p_A) 0.5000 0.8991 4.5102 ( 0 9 36) 0 0.5508 0.9245 18 10 ( 4430 1nxq_A) ( 2781 1ja9_A) 0.9230 0.9719 2.8655 ( 5 85 136) 0 0.9230 0.9719 18 17 ( 4430 1nxq_A) ( 2789 1jax_A) 0.3333 0.3000 2.5218 ( 0 6 15) 0 0.4899 0.4665 18 20 ( 4430 1nxq_A) ( 3017 1jqb_A) 0.4444 0.5333 3.1064 ( 0 11 28) 0 0.6111 0.7333 18 15 ( 4430 1nxq_A) ( 3059 1jtv_A) 0.8393 0.8393 3.9672 ( 6 75 120) 0 0.8393 0.8393 18 18 ( 4430 1nxq_A) ( 3072 1jvb_A) 0.3889 0.5385 2.6820 ( 0 5 21) 0 0.6110 0.8455 18 13 ( 4430 1nxq_A) ( 3144 1k2w_A) 0.9367 0.9897 3.0949 ( 4 89 136) 0 0.9367 0.9897 18 17 ( 4430 1nxq_A) ( 3192 1k6j_A) 0.7756 0.5828 2.9540 ( 2 48 91) 0 0.7756 0.5828 18 24 ( 4430 1nxq_A) ( 3257 1kbz_A) 0.7154 0.6789 4.8180 ( 2 33 78) 0 0.7154 0.6789 18 19 ( 4430 1nxq_A) ( 3385 1kol_A) 0.3889 0.4375 4.1320 ( 0 12 21) 0 0.6664 0.7496 18 16 ( 4430 1nxq_A) ( 3414 1ks9_A) 0.4444 0.4705 4.6868 ( 0 10 28) 0 0.4999 0.5293 18 17 ( 4430 1nxq_A) ( 3481 1kyq_A) 0.4344 0.6727 2.9613 ( 1 8 28) 0 0.4444 0.7996 18 10 ( 4430 1nxq_A) ( 3561 1l7d_A) 0.4441 0.5325 8.3972 ( 0 7 28) 0 0.5554 0.6663 18 15 ( 4430 1nxq_A) ( 3593 1lc0_A) 0.5529 0.8138 4.8507 ( 1 15 45) 0 0.6107 0.9132 18 12 ( 4430 1nxq_A) ( 3606 1ldn_A) 0.6037 0.8663 4.9356 ( 2 26 55) 0 0.6047 0.8725 18 12 ( 4430 1nxq_A) ( 3610 1leh_A) 0.5108 0.6138 6.3112 ( 3 21 45) 0 0.5546 0.7642 18 13 ( 4430 1nxq_A) ( 3633 1li4_A) 0.4442 0.6141 7.8482 ( 0 10 28) 0 0.6101 0.8409 18 13 ( 4430 1nxq_A) ( 3637 1lj8_A) 0.6072 0.5477 5.1996 ( 2 31 55) 0 0.6097 0.5492 18 20 ( 4430 1nxq_A) ( 3677 1lnq_A) 0.6661 0.6661 5.7313 ( 0 36 66) 0 0.6661 0.6661 18 18 ( 4430 1nxq_A) ( 3722 1lss_A) 0.6111 0.9164 3.3509 ( 0 24 55) 0 0.6111 0.9164 18 12 ( 4430 1nxq_A) ( 3724 1lsu_A) 0.6111 0.9163 3.5158 ( 0 25 55) 0 0.6111 0.9163 18 12 ( 4430 1nxq_A) ( 3734 1lu9_A) 0.3889 0.5000 2.7386 ( 0 8 21) 0 0.6111 0.7855 18 14 ( 4430 1nxq_A) ( 3854 1m66_A) 0.3333 0.3750 5.9966 ( 0 4 15) 0 0.5854 0.6438 18 16 ( 4430 1nxq_A) ( 4047 1mv8_A) 0.3333 0.3529 3.8916 ( 0 8 15) 0 0.6628 0.7008 18 17 ( 4430 1nxq_A) ( 4067 1mx3_A) 0.3333 0.4286 2.7814 ( 0 5 15) 0 0.6664 0.8563 18 14 ( 4430 1nxq_A) ( 4131 1n5d_A) 0.7778 0.8235 2.0491 ( 0 47 91) 0 0.8155 0.8589 18 17 ( 4430 1nxq_A) ( 4341 1np3_A) 0.3333 0.3529 2.7229 ( 0 5 15) 0 0.5426 0.5712 18 17 ( 4430 1nxq_A) ( 4351 1npy_A) 0.3889 0.5384 3.4304 ( 0 7 21) 0 0.6105 0.8429 18 13 ( 4430 1nxq_A) ( 4404 1nvm_B) 0.5555 0.8329 4.0237 ( 0 16 45) 0 0.6106 0.9131 18 12 ( 4430 1nxq_A) ( 4409 1nvt_A) 0.3333 0.5000 2.8629 ( 0 6 15) 0 0.6110 0.9160 18 12 ( 4430 1nxq_A) ( 4417 1nwc_A) 0.3333 0.5453 5.1742 ( 0 2 15) 0 0.6106 0.9945 18 11 ( 4430 1nxq_A) ( 4430 1nxq_A) 1.0000 1.0000 0.0000 ( 0 109 153) 0 1.0000 1.0000 18 18 ( 4430 1nxq_A) ( 4447 1nyt_A) 0.4444 0.6151 5.4444 ( 0 14 28) 0 0.6663 0.9213 18 13 ( 4430 1nxq_A) ( 4499 1o5i_A) 0.9444 0.9999 1.8858 ( 1 81 136) 0 0.9444 0.9999 18 17 ( 4430 1nxq_A) ( 4520 1o6z_A) 0.5857 0.8095 5.1251 ( 3 28 55) 0 0.5857 0.9011 18 11 ( 4430 1nxq_A) ( 4549 1o89_A) 0.3889 0.5384 3.7895 ( 0 7 21) 0 0.6109 0.8451 18 13 ( 4430 1nxq_A) ( 4573 1oaa ) 0.8329 0.9368 3.2741 ( 1 46 105) 0 0.8329 0.9368 18 16 ( 4430 1nxq_A) ( 4585 1obb_A) 0.6038 0.8116 4.0239 ( 2 26 55) 0 0.6660 0.9197 18 13 ( 4430 1nxq_A) ( 4588 1obf_O) 0.5555 0.8329 4.0270 ( 0 23 45) 0 0.5555 0.8329 18 12 ( 4430 1nxq_A) ( 4668 1oi7_A) 0.5555 0.9990 3.9834 ( 0 19 45) 0 0.5555 0.9993 18 10 ( 4430 1nxq_A) ( 4730 1ono_A) 0.5526 0.8118 6.7571 ( 1 15 45) 0 0.5970 0.8327 18 12 ( 4430 1nxq_A) ( 4739 1ooe_A) 0.7218 0.9270 4.3266 ( 1 41 78) 0 0.7218 0.9270 18 14 ( 4430 1nxq_A) ( 4765 1orr_A) 0.4422 0.4102 4.4096 ( 11 50 91) 0 0.7750 0.5380 18 26 ( 4430 1nxq_A) ( 4863 1p1j_A) 0.5554 0.4000 4.9381 ( 0 21 45) 0 0.6093 0.4396 18 25 ( 4430 1nxq_A) ( 4943 1p9l_A) 0.6109 0.9981 4.7476 ( 0 23 55) 0 0.6110 0.9987 18 11 ( 4430 1nxq_A) ( 5029 1pjq_A) 0.4444 0.7999 2.7243 ( 0 9 28) 0 0.4948 0.8199 18 10 ( 4430 1nxq_A) ( 5045 1pl7_A) 0.3889 0.5385 2.0566 ( 0 7 21) 0 0.6663 0.9212 18 13 ( 4430 1nxq_A) ( 5082 1pqw_A) 0.4444 0.5000 2.8678 ( 0 7 28) 0 0.6662 0.7491 18 16 ( 4430 1nxq_A) ( 5097 1psd_A) 0.3333 0.4999 5.1087 ( 0 4 15) 0 0.5945 0.8324 18 12 ( 4430 1nxq_A) ( 5140 1px0_A) 0.8778 0.9803 3.3014 ( 4 75 120) 0 0.8778 0.9803 18 16 ( 4430 1nxq_A) ( 5227 1q7c_A) 0.9418 0.9418 1.3948 ( 3 87 136) 0 0.9729 0.9729 18 18 ( 4430 1nxq_A) ( 5362 1qki_A) 0.6103 0.9109 4.4229 ( 1 24 55) 0 0.6103 0.9109 18 12 ( 4430 1nxq_A) ( 5387 1qmg_A) 0.3333 0.3158 3.0487 ( 0 5 15) 0 0.5497 0.5218 18 19 ( 4430 1nxq_A) ( 5406 1qor_A) 0.3889 0.5385 2.7300 ( 0 6 21) 0 0.6663 0.9210 18 13 ( 4430 1nxq_A) ( 5409 1qp8_A) 0.3333 0.4615 4.0246 ( 0 7 15) 0 0.6659 0.9194 18 13 ( 4430 1nxq_A) ( 5444 1qsg_A) 0.9935 0.9935 2.6230 ( 4 100 153) 0 0.9935 0.9935 18 18 ( 4430 1nxq_A) ( 5493 1qyc_A) 0.7756 0.5828 3.9347 ( 2 49 91) 0 0.7756 0.5828 18 24 ( 4430 1nxq_A) ( 5571 1r6d_A) 0.5125 0.4705 4.0731 ( 10 54 91) 0 0.7741 0.5824 18 24 ( 4430 1nxq_A) ( 5654 1rjw_A) 0.3889 0.4667 2.7699 ( 0 6 21) 0 0.6606 0.7853 18 15 ( 4430 1nxq_A) ( 5665 1rkx_A) 0.7544 0.6555 4.1543 ( 4 52 91) 0 0.7544 0.6555 18 21 ( 4430 1nxq_A) ( 5786 1say_A) 0.3333 0.5000 2.1272 ( 0 5 15) 0 0.6102 0.9096 18 12 ( 4430 1nxq_A) ( 5838 1spx_A) 0.9444 0.9999 2.0456 ( 0 89 136) 0 0.9444 0.9999 18 17 ( 4430 1nxq_A) ( 5877 1t2d_A) 0.6025 0.9165 4.7491 ( 2 25 55) 0 0.6025 0.9165 18 11 ( 4430 1nxq_A) ( 5942 1u8x_X) 0.6102 0.9102 5.1507 ( 1 24 55) 0 0.6108 0.9140 18 12 ( 4430 1nxq_A) ( 5954 1uay_A) 0.8320 0.9351 2.2394 ( 2 59 105) 0 0.8320 0.9351 18 16 ( 4430 1nxq_A) ( 6085 1ur5_A) 0.6045 0.8716 5.6668 ( 2 27 55) 0 0.6045 0.8716 18 12 ( 4430 1nxq_A) ( 6114 1uuf_A) 0.4442 0.5707 7.4145 ( 0 10 28) 0 0.6109 0.7849 18 14 ( 4430 1nxq_A) ( 6257 1vi2_A) 0.3889 0.5384 4.8070 ( 0 9 21) 0 0.6530 0.8616 18 13 ( 4430 1nxq_A) ( 6274 1vj0_A) 0.3889 0.4375 2.6784 ( 0 5 21) 0 0.6111 0.6874 18 16 ( 4430 1nxq_A) ( 6276 1vj1_A) 0.4444 0.5711 5.8947 ( 0 8 28) 0 0.6664 0.8563 18 14 ( 4430 1nxq_A) ( 6292 1vjp_A) 0.6109 0.7851 4.8393 ( 0 27 55) 0 0.6524 0.8113 18 14 ( 4430 1nxq_A) ( 6341 1xcb_A) 0.3889 0.8741 4.6083 ( 0 6 21) 0 0.3889 0.8743 18 8 ( 4430 1nxq_A) ( 6388 2ae1 ) 0.9444 0.9999 1.7576 ( 1 88 136) 0 0.9444 0.9999 18 17 ( 4430 1nxq_A) ( 6420 2cmd ) 0.5782 0.7480 4.5349 ( 3 26 55) 0 0.6102 0.9097 18 12 ( 4430 1nxq_A) ( 6426 2dap ) 0.5554 0.9978 4.9032 ( 0 17 45) 0 0.5555 0.9984 18 10 ( 4430 1nxq_A) ( 6497 2nac_A) 0.3333 0.4614 5.7792 ( 0 2 15) 0 0.6093 0.8372 18 13 ( 4430 1nxq_A) ( 6505 2pgd ) 0.3855 0.4885 6.7720 ( 1 9 21) 0 0.5971 0.7408 18 14 ( 4430 1nxq_A) ( 6627 6ldh ) 0.6608 0.8951 4.6865 ( 2 31 66) 0 0.6608 0.8951 18 13 -------------------------------------------------------------------------------------------------------------------------