------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4573 1oaa ) ( 42 1a4i_A) 0.3125 0.5000 4.4663 ( 0 1 10) 0 0.5000 0.7997 16 10 ( 4573 1oaa ) ( 265 1b16_A) 0.9371 0.9371 3.4389 ( 0 44 105) 0 0.9371 0.9371 16 16 ( 4573 1oaa ) ( 312 1b7g_O) 0.6249 0.7689 4.2104 ( 0 13 45) 0 0.6249 0.7689 16 13 ( 4573 1oaa ) ( 319 1b8p_A) 0.6872 0.9982 4.6350 ( 0 19 55) 0 0.6872 0.9982 16 11 ( 4573 1oaa ) ( 352 1bdb ) 0.8748 0.7777 3.2722 ( 0 40 91) 0 0.8748 0.7777 16 18 ( 4573 1oaa ) ( 377 1bg6 ) 0.3750 0.3333 4.0714 ( 0 3 15) 0 0.5625 0.5000 16 18 ( 4573 1oaa ) ( 506 1c1d_A) 0.3125 0.4166 5.7642 ( 0 0 10) 0 0.5621 0.7482 16 12 ( 4573 1oaa ) ( 707 1cyd_A) 0.9374 0.8333 2.6691 ( 0 46 105) 0 0.9374 0.8333 16 18 ( 4573 1oaa ) ( 781 1db3_A) 0.8117 0.5908 3.3507 ( 1 35 78) 0 0.9174 0.6776 16 22 ( 4573 1oaa ) ( 847 1dih ) 0.4375 0.9994 3.5412 ( 0 2 21) 0 0.4375 0.9997 16 7 ( 4573 1oaa ) ( 873 1dlj_A) 0.3750 0.3750 4.0940 ( 0 6 15) 0 0.6468 0.6468 16 16 ( 4573 1oaa ) ( 906 1dpg_A) 0.7496 0.9220 4.5013 ( 0 27 66) 0 0.7496 0.9220 16 13 ( 4573 1oaa ) ( 972 1dxy ) 0.3750 0.3750 4.1051 ( 0 6 15) 0 0.6904 0.6904 16 16 ( 4573 1oaa ) ( 1053 1e6u_A) 0.6874 0.5000 3.7402 ( 0 23 55) 0 0.8011 0.5885 16 22 ( 4573 1oaa ) ( 1071 1e7w_A) 0.8745 0.8231 2.5749 ( 1 41 91) 0 0.8745 0.8231 16 17 ( 4573 1oaa ) ( 1094 1ebf_A) 0.3749 0.4995 8.0331 ( 0 1 15) 0 0.5323 0.6493 16 12 ( 4573 1oaa ) ( 1117 1edz_A) 0.3750 0.5000 3.7042 ( 0 2 15) 0 0.5619 0.7473 16 12 ( 4573 1oaa ) ( 1189 1ek6_A) 0.8123 0.5909 3.5194 ( 0 37 78) 0 0.8742 0.6569 16 22 ( 4573 1oaa ) ( 1219 1enp ) 0.8748 0.7776 3.3021 ( 0 45 91) 0 0.8748 0.7776 16 18 ( 4573 1oaa ) ( 1221 1eny ) 0.9369 0.8819 3.1321 ( 1 50 105) 0 0.9369 0.8819 16 17 ( 4573 1oaa ) ( 1242 1eq2_A) 0.5000 0.3636 3.4596 ( 0 14 28) 0 0.9490 0.7159 16 22 ( 4573 1oaa ) ( 1355 1f14_A) 0.3125 0.3333 3.5021 ( 0 4 10) 0 0.6669 0.7055 16 15 ( 4573 1oaa ) ( 1436 1f8f_A) 0.4997 0.5709 6.9269 ( 0 2 28) 0 0.7469 0.8511 16 14 ( 4573 1oaa ) ( 1487 1ff9_A) 0.8120 0.8660 4.3345 ( 0 33 78) 0 0.8120 0.8660 16 15 ( 4573 1oaa ) ( 1531 1fjh_A) 0.6875 0.6875 2.5468 ( 0 22 55) 0 0.7491 0.7491 16 16 ( 4573 1oaa ) ( 1560 1fmc_A) 0.9370 0.8819 2.6942 ( 1 46 105) 0 0.9370 0.8819 16 17 ( 4573 1oaa ) ( 1804 1gdh_A) 0.4878 0.5487 9.6454 ( 1 9 28) 0 0.7481 0.8535 16 14 ( 4573 1oaa ) ( 1807 1gee_A) 0.9369 0.7498 3.0087 ( 1 46 105) 0 0.9369 0.7498 16 20 ( 4573 1oaa ) ( 1809 1geg_A) 0.9370 0.8819 2.9472 ( 1 48 105) 0 0.9370 0.8819 16 17 ( 4573 1oaa ) ( 1899 1gpj_A) 0.3750 0.5000 4.3524 ( 0 2 15) 0 0.6872 0.9155 16 12 ( 4573 1oaa ) ( 1922 1gr0_A) 0.6796 0.7706 5.5031 ( 1 15 55) 0 0.6796 0.7706 16 14 ( 4573 1oaa ) ( 1948 1gtm_A) 0.5140 0.5140 7.9550 ( 2 12 45) 0 0.6869 0.6869 16 16 ( 4573 1oaa ) ( 1956 1gu7_A) 0.6529 0.6208 6.4820 ( 2 20 55) 0 0.7471 0.7037 16 17 ( 4573 1oaa ) ( 2004 1gy8_A) 0.8120 0.5651 4.3686 ( 0 37 78) 0 0.8739 0.6085 16 23 ( 4573 1oaa ) ( 2016 1gz3_A) 0.4375 0.4117 5.1742 ( 0 0 21) 0 0.7444 0.7018 16 17 ( 4573 1oaa ) ( 2017 1gz6_A) 0.9373 0.7499 3.0194 ( 0 48 105) 0 0.9373 0.7499 16 20 ( 4573 1oaa ) ( 2046 1h2b_A) 0.4998 0.5711 6.3194 ( 0 3 28) 0 0.7492 0.8556 16 14 ( 4573 1oaa ) ( 2090 1h5q_A) 0.9369 0.7498 2.8818 ( 1 46 105) 0 0.9369 0.7498 16 20 ( 4573 1oaa ) ( 2095 1h6d_A) 0.6871 0.7848 5.2544 ( 0 19 55) 0 0.7129 0.7903 16 14 ( 4573 1oaa ) ( 2180 1hdc_A) 0.9368 0.8818 3.1253 ( 1 45 105) 0 0.9368 0.8818 16 17 ( 4573 1oaa ) ( 2189 1hdo_A) 0.7499 0.7999 3.0053 ( 0 28 66) 0 0.7499 0.7999 16 15 ( 4573 1oaa ) ( 2194 1het_A) 0.4998 0.5330 6.6443 ( 0 3 28) 0 0.7492 0.7989 16 15 ( 4573 1oaa ) ( 2270 1hrd_A) 0.4375 0.4375 5.0917 ( 0 4 21) 0 0.6842 0.6842 16 16 ( 4573 1oaa ) ( 2309 1hwx_A) 0.3749 0.3528 8.4830 ( 0 5 15) 0 0.6809 0.6421 16 17 ( 4573 1oaa ) ( 2316 1hxh_A) 0.9366 0.9366 3.3305 ( 1 43 105) 0 0.9366 0.9366 16 16 ( 4573 1oaa ) ( 2328 1hye_A) 0.6871 0.9975 5.0703 ( 0 19 55) 0 0.6871 0.9975 16 11 ( 4573 1oaa ) ( 2330 1hyh_A) 0.6871 0.9974 5.1257 ( 0 19 55) 0 0.6871 0.9974 16 11 ( 4573 1oaa ) ( 2368 1i24_A) 0.8743 0.5185 4.3845 ( 0 45 91) 0 0.9353 0.5554 16 27 ( 4573 1oaa ) ( 2376 1i36_A) 0.3125 0.3333 4.2986 ( 0 1 10) 0 0.6249 0.6665 16 15 ( 4573 1oaa ) ( 2463 1id1_A) 0.6874 0.8458 3.8613 ( 0 18 55) 0 0.6874 0.8458 16 13 ( 4573 1oaa ) ( 2615 1iuk_A) 0.3125 0.4166 6.4906 ( 0 3 10) 0 0.6247 0.8321 16 12 ( 4573 1oaa ) ( 2657 1iy8_A) 0.9369 0.8819 2.7156 ( 1 46 105) 0 0.9369 0.8819 16 17 ( 4573 1oaa ) ( 2674 1iz0_A) 0.4375 0.4667 3.4278 ( 0 3 21) 0 0.7494 0.7992 16 15 ( 4573 1oaa ) ( 2725 1j3v_A) 0.3125 0.3571 2.9620 ( 0 2 10) 0 0.6247 0.7136 16 14 ( 4573 1oaa ) ( 2736 1j5p_A) 0.5624 0.8994 4.0447 ( 0 8 36) 0 0.5625 0.8997 16 10 ( 4573 1oaa ) ( 2781 1ja9_A) 0.9371 0.8821 2.3230 ( 1 49 105) 0 0.9371 0.8821 16 17 ( 4573 1oaa ) ( 2789 1jax_A) 0.2500 0.2000 4.4318 ( 0 3 6) 0 0.6467 0.5354 16 20 ( 4573 1oaa ) ( 3017 1jqb_A) 0.4375 0.4667 3.7215 ( 0 3 21) 0 0.7495 0.7993 16 15 ( 4573 1oaa ) ( 3059 1jtv_A) 0.9330 0.8308 3.1961 ( 2 51 105) 0 0.9330 0.8308 16 18 ( 4573 1oaa ) ( 3072 1jvb_A) 0.4375 0.5384 3.7904 ( 0 3 21) 0 0.6872 0.8453 16 13 ( 4573 1oaa ) ( 3144 1k2w_A) 0.9369 0.8819 3.0559 ( 1 49 105) 0 0.9369 0.8819 16 17 ( 4573 1oaa ) ( 3192 1k6j_A) 0.8124 0.5416 3.1124 ( 0 34 78) 0 0.8744 0.6100 16 24 ( 4573 1oaa ) ( 3257 1kbz_A) 0.7485 0.6309 3.8333 ( 1 26 66) 0 0.8586 0.7297 16 19 ( 4573 1oaa ) ( 3385 1kol_A) 0.3750 0.3750 3.0880 ( 0 6 15) 0 0.8094 0.8094 16 16 ( 4573 1oaa ) ( 3414 1ks9_A) 0.3125 0.2941 4.1206 ( 0 4 10) 0 0.6246 0.5880 16 17 ( 4573 1oaa ) ( 3481 1kyq_A) 0.4719 0.6237 3.1357 ( 1 7 28) 0 0.4999 0.7994 16 10 ( 4573 1oaa ) ( 3561 1l7d_A) 0.3750 0.4000 4.4029 ( 0 3 15) 0 0.6248 0.6665 16 15 ( 4573 1oaa ) ( 3593 1lc0_A) 0.3125 0.4167 3.3167 ( 0 1 10) 0 0.7404 0.9620 16 12 ( 4573 1oaa ) ( 3606 1ldn_A) 0.6872 0.9153 4.8219 ( 0 19 55) 0 0.6872 0.9153 16 12 ( 4573 1oaa ) ( 3610 1leh_A) 0.3125 0.3846 5.4675 ( 0 1 10) 0 0.6231 0.7640 16 13 ( 4573 1oaa ) ( 3633 1li4_A) 0.3750 0.4615 4.1839 ( 0 1 15) 0 0.6248 0.7687 16 13 ( 4573 1oaa ) ( 3637 1lj8_A) 0.3125 0.2500 4.7802 ( 0 3 10) 0 0.7480 0.5994 16 20 ( 4573 1oaa ) ( 3677 1lnq_A) 0.7490 0.6661 5.7079 ( 0 30 66) 0 0.7490 0.6661 16 18 ( 4573 1oaa ) ( 3722 1lss_A) 0.6874 0.9162 3.8035 ( 0 18 55) 0 0.6874 0.9163 16 12 ( 4573 1oaa ) ( 3724 1lsu_A) 0.6874 0.9163 3.4827 ( 0 19 55) 0 0.6874 0.9163 16 12 ( 4573 1oaa ) ( 3734 1lu9_A) 0.4375 0.5000 3.0954 ( 0 3 21) 0 0.6874 0.7855 16 14 ( 4573 1oaa ) ( 3854 1m66_A) 0.3125 0.3125 5.2434 ( 0 4 10) 0 0.6246 0.6246 16 16 ( 4573 1oaa ) ( 4047 1mv8_A) 0.3229 0.3224 5.1796 ( 12 39 78) 0 0.6868 0.6465 16 17 ( 4573 1oaa ) ( 4067 1mx3_A) 0.3750 0.4286 4.0746 ( 0 6 15) 0 0.7496 0.8564 16 14 ( 4573 1oaa ) ( 4131 1n5d_A) 0.8749 0.8235 2.4314 ( 0 42 91) 0 0.8749 0.8235 16 17 ( 4573 1oaa ) ( 4341 1np3_A) 0.3637 0.3609 5.7933 ( 4 15 45) 0 0.6467 0.6160 16 17 ( 4573 1oaa ) ( 4351 1npy_A) 0.3750 0.4615 3.2747 ( 0 3 15) 0 0.6871 0.8450 16 13 ( 4573 1oaa ) ( 4404 1nvm_B) 0.6249 0.8331 3.6223 ( 0 14 45) 0 0.6868 0.9135 16 12 ( 4573 1oaa ) ( 4409 1nvt_A) 0.3898 0.4487 7.1823 ( 1 5 21) 0 0.6249 0.8330 16 12 ( 4573 1oaa ) ( 4417 1nwc_A) 0.3125 0.4545 5.8247 ( 0 0 10) 0 0.6869 0.9963 16 11 ( 4573 1oaa ) ( 4430 1nxq_A) 0.9368 0.8329 3.2741 ( 1 46 105) 0 0.9368 0.8329 16 18 ( 4573 1oaa ) ( 4447 1nyt_A) 0.3750 0.4615 3.3187 ( 0 3 15) 0 0.6873 0.8457 16 13 ( 4573 1oaa ) ( 4499 1o5i_A) 0.9366 0.8817 3.3592 ( 1 42 105) 0 0.9366 0.8817 16 17 ( 4573 1oaa ) ( 4520 1o6z_A) 0.6871 0.9975 5.0532 ( 0 19 55) 0 0.6871 0.9975 16 11 ( 4573 1oaa ) ( 4549 1o89_A) 0.4375 0.5384 3.5067 ( 0 3 21) 0 0.6872 0.8452 16 13 ( 4573 1oaa ) ( 4573 1oaa ) 1.0000 1.0000 0.0000 ( 0 65 120) 0 1.0000 1.0000 16 16 ( 4573 1oaa ) ( 4585 1obb_A) 0.6874 0.8458 3.9261 ( 0 19 55) 0 0.7474 0.9159 16 13 ( 4573 1oaa ) ( 4588 1obf_O) 0.5624 0.7497 4.3825 ( 0 16 36) 0 0.6164 0.7498 16 12 ( 4573 1oaa ) ( 4668 1oi7_A) 0.6249 0.9989 4.1272 ( 0 13 45) 0 0.6249 0.9995 16 10 ( 4573 1oaa ) ( 4730 1ono_A) 0.6249 0.8331 3.5197 ( 0 9 45) 0 0.6872 0.9155 16 12 ( 4573 1oaa ) ( 4739 1ooe_A) 0.8114 0.9263 4.5204 ( 1 35 78) 0 0.8114 0.9263 16 14 ( 4573 1oaa ) ( 4765 1orr_A) 0.4110 0.2666 5.9495 ( 1 6 21) 0 0.9178 0.5751 16 26 ( 4573 1oaa ) ( 4863 1p1j_A) 0.6844 0.4397 5.9417 ( 1 20 55) 0 0.6844 0.4397 16 25 ( 4573 1oaa ) ( 4943 1p9l_A) 0.6872 0.9984 4.5482 ( 0 20 55) 0 0.6874 0.9991 16 11 ( 4573 1oaa ) ( 5029 1pjq_A) 0.5000 0.7998 3.7107 ( 0 3 28) 0 0.5428 0.7998 16 10 ( 4573 1oaa ) ( 5045 1pl7_A) 0.4998 0.6149 6.2014 ( 0 3 28) 0 0.7492 0.9208 16 13 ( 4573 1oaa ) ( 5082 1pqw_A) 0.5000 0.5000 3.9990 ( 0 4 28) 0 0.7497 0.7497 16 16 ( 4573 1oaa ) ( 5097 1psd_A) 0.3750 0.5000 4.1233 ( 0 6 15) 0 0.6871 0.9148 16 12 ( 4573 1oaa ) ( 5140 1px0_A) 0.8122 0.8122 3.7571 ( 0 35 78) 0 0.8596 0.8596 16 16 ( 4573 1oaa ) ( 5227 1q7c_A) 0.9367 0.8329 3.1509 ( 1 43 105) 0 0.9367 0.8329 16 18 ( 4573 1oaa ) ( 5362 1qki_A) 0.6249 0.8329 4.0418 ( 0 13 45) 0 0.6776 0.8779 16 12 ( 4573 1oaa ) ( 5387 1qmg_A) 0.3125 0.2632 4.2510 ( 0 1 10) 0 0.6868 0.5787 16 19 ( 4573 1oaa ) ( 5406 1qor_A) 0.4375 0.5384 4.0068 ( 0 3 21) 0 0.7495 0.9216 16 13 ( 4573 1oaa ) ( 5409 1qp8_A) 0.3749 0.4613 7.5362 ( 0 3 15) 0 0.7462 0.9125 16 13 ( 4573 1oaa ) ( 5444 1qsg_A) 0.9373 0.8332 2.9489 ( 0 48 105) 0 0.9373 0.8332 16 18 ( 4573 1oaa ) ( 5493 1qyc_A) 0.8736 0.5831 4.6699 ( 1 40 91) 0 0.9305 0.6241 16 24 ( 4573 1oaa ) ( 5571 1r6d_A) 0.5625 0.3750 3.0276 ( 0 18 36) 0 0.8746 0.5833 16 24 ( 4573 1oaa ) ( 5654 1rjw_A) 0.6249 0.6666 3.6121 ( 0 14 45) 0 0.7490 0.7986 16 15 ( 4573 1oaa ) ( 5665 1rkx_A) 0.8119 0.6189 3.5938 ( 1 40 78) 0 0.8711 0.6657 16 21 ( 4573 1oaa ) ( 5786 1say_A) 0.4374 0.5829 6.3327 ( 0 3 21) 0 0.6873 0.9160 16 12 ( 4573 1oaa ) ( 5838 1spx_A) 0.8749 0.8235 2.7045 ( 0 40 91) 0 0.8749 0.8235 16 17 ( 4573 1oaa ) ( 5877 1t2d_A) 0.6872 0.9982 4.6348 ( 0 19 55) 0 0.6872 0.9982 16 11 ( 4573 1oaa ) ( 5942 1u8x_X) 0.6872 0.9152 4.9248 ( 0 19 55) 0 0.7471 0.9880 16 12 ( 4573 1oaa ) ( 5954 1uay_A) 0.8630 0.8630 2.9857 ( 2 36 91) 0 0.8741 0.8741 16 16 ( 4573 1oaa ) ( 6085 1ur5_A) 0.6872 0.9153 4.8528 ( 0 19 55) 0 0.6872 0.9153 16 12 ( 4573 1oaa ) ( 6114 1uuf_A) 0.4374 0.4998 6.4201 ( 0 1 21) 0 0.7494 0.8561 16 14 ( 4573 1oaa ) ( 6257 1vi2_A) 0.3750 0.4615 2.8474 ( 0 2 15) 0 0.6873 0.8457 16 13 ( 4573 1oaa ) ( 6274 1vj0_A) 0.4375 0.4375 3.8183 ( 0 3 21) 0 0.6874 0.6874 16 16 ( 4573 1oaa ) ( 6276 1vj1_A) 0.4998 0.5710 6.6196 ( 0 3 28) 0 0.7495 0.8562 16 14 ( 4573 1oaa ) ( 6292 1vjp_A) 0.6871 0.7849 5.2100 ( 0 19 55) 0 0.6871 0.7849 16 14 ( 4573 1oaa ) ( 6341 1xcb_A) 0.4375 0.8745 3.9954 ( 0 4 21) 0 0.4375 0.8747 16 8 ( 4573 1oaa ) ( 6388 2ae1 ) 0.8749 0.8235 2.4460 ( 0 41 91) 0 0.9337 0.8795 16 17 ( 4573 1oaa ) ( 6420 2cmd ) 0.6872 0.9156 4.5791 ( 0 19 55) 0 0.6872 0.9156 16 12 ( 4573 1oaa ) ( 6426 2dap ) 0.6248 0.9977 4.9358 ( 0 12 45) 0 0.6249 0.9989 16 10 ( 4573 1oaa ) ( 6497 2nac_A) 0.3749 0.4614 6.8869 ( 0 0 15) 0 0.6872 0.8453 16 13 ( 4573 1oaa ) ( 6505 2pgd ) 0.3125 0.3571 3.4669 ( 0 4 10) 0 0.6826 0.7764 16 14 ( 4573 1oaa ) ( 6627 6ldh ) 0.7495 0.9218 4.7762 ( 0 22 66) 0 0.7495 0.9218 16 13 -------------------------------------------------------------------------------------------------------------------------