------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5838 1spx_A) ( 42 1a4i_A) 0.2941 0.5000 4.4845 ( 0 2 10) 0 0.4706 0.7998 17 10 ( 5838 1spx_A) ( 265 1b16_A) 0.8235 0.8749 2.3026 ( 0 41 91) 0 0.8235 0.8749 17 16 ( 5838 1spx_A) ( 312 1b7g_O) 0.5882 0.7689 4.1248 ( 0 16 45) 0 0.6465 0.8439 17 13 ( 5838 1spx_A) ( 319 1b8p_A) 0.6468 0.9974 5.1264 ( 0 23 55) 0 0.6468 0.9974 17 11 ( 5838 1spx_A) ( 352 1bdb ) 0.9397 0.8878 2.7875 ( 2 69 120) 0 0.9397 0.8878 17 18 ( 5838 1spx_A) ( 377 1bg6 ) 0.3529 0.3333 3.4514 ( 0 4 15) 0 0.5881 0.5555 17 18 ( 5838 1spx_A) ( 506 1c1d_A) 0.3529 0.4997 7.1492 ( 0 5 15) 0 0.5291 0.7484 17 12 ( 5838 1spx_A) ( 707 1cyd_A) 0.9998 0.9443 2.3925 ( 1 86 136) 0 0.9998 0.9443 17 18 ( 5838 1spx_A) ( 781 1db3_A) 0.7647 0.5909 2.6540 ( 0 35 78) 0 0.7647 0.5909 17 22 ( 5838 1spx_A) ( 847 1dih ) 0.4118 0.9991 3.9464 ( 0 2 21) 0 0.4118 0.9994 17 7 ( 5838 1spx_A) ( 873 1dlj_A) 0.7048 0.7485 5.3342 ( 1 30 66) 0 0.7048 0.7485 17 16 ( 5838 1spx_A) ( 906 1dpg_A) 0.7057 0.9222 4.2797 ( 0 30 66) 0 0.7057 0.9222 17 13 ( 5838 1spx_A) ( 972 1dxy ) 0.3529 0.3750 3.4844 ( 0 7 15) 0 0.7027 0.7457 17 16 ( 5838 1spx_A) ( 1053 1e6u_A) 0.7031 0.5447 4.5764 ( 2 41 66) 0 0.7031 0.5447 17 22 ( 5838 1spx_A) ( 1071 1e7w_A) 0.9999 0.9999 1.9802 ( 1 84 136) 0 0.9999 0.9999 17 17 ( 5838 1spx_A) ( 1094 1ebf_A) 0.3529 0.4997 7.1007 ( 0 1 15) 0 0.5820 0.8001 17 12 ( 5838 1spx_A) ( 1117 1edz_A) 0.2941 0.4167 3.0269 ( 0 1 10) 0 0.5294 0.7498 17 12 ( 5838 1spx_A) ( 1189 1ek6_A) 0.7646 0.5909 3.3559 ( 0 39 78) 0 0.7646 0.6075 17 22 ( 5838 1spx_A) ( 1219 1enp ) 0.9997 0.9442 3.0868 ( 0 89 136) 0 0.9997 0.9442 17 18 ( 5838 1spx_A) ( 1221 1eny ) 0.9397 0.9397 3.3321 ( 2 71 120) 0 0.9397 0.9397 17 17 ( 5838 1spx_A) ( 1242 1eq2_A) 0.7931 0.6275 3.6661 ( 3 39 91) 0 0.7931 0.6275 17 22 ( 5838 1spx_A) ( 1355 1f14_A) 0.2941 0.3333 3.3993 ( 0 4 10) 0 0.6357 0.7127 17 15 ( 5838 1spx_A) ( 1436 1f8f_A) 0.4706 0.5714 2.9753 ( 0 7 28) 0 0.7053 0.8557 17 14 ( 5838 1spx_A) ( 1487 1ff9_A) 0.7057 0.7997 4.0906 ( 0 26 66) 0 0.7324 0.8099 17 15 ( 5838 1spx_A) ( 1531 1fjh_A) 0.7647 0.8124 2.7091 ( 0 45 78) 0 0.8213 0.8719 17 16 ( 5838 1spx_A) ( 1560 1fmc_A) 0.9411 0.9411 1.6555 ( 1 70 120) 0 0.9411 0.9411 17 17 ( 5838 1spx_A) ( 1804 1gdh_A) 0.4118 0.5000 4.0310 ( 0 10 21) 0 0.7043 0.8529 17 14 ( 5838 1spx_A) ( 1807 1gee_A) 0.9999 0.8500 1.5301 ( 1 84 136) 0 0.9999 0.8500 17 20 ( 5838 1spx_A) ( 1809 1geg_A) 0.9399 0.9399 2.3133 ( 2 71 120) 0 0.9399 0.9399 17 17 ( 5838 1spx_A) ( 1899 1gpj_A) 0.3529 0.5000 3.2478 ( 0 4 15) 0 0.6468 0.9151 17 12 ( 5838 1spx_A) ( 1922 1gr0_A) 0.6446 0.7793 5.0694 ( 1 19 55) 0 0.6467 0.7847 17 14 ( 5838 1spx_A) ( 1948 1gtm_A) 0.3529 0.3750 5.2285 ( 0 1 15) 0 0.6157 0.6464 17 16 ( 5838 1spx_A) ( 1956 1gu7_A) 0.4118 0.4118 3.7447 ( 0 5 21) 0 0.6984 0.6984 17 17 ( 5838 1spx_A) ( 2004 1gy8_A) 0.4109 0.3929 5.0198 ( 10 42 78) 0 0.7252 0.5557 17 23 ( 5838 1spx_A) ( 2016 1gz3_A) 0.5880 0.5880 5.3472 ( 0 14 45) 0 0.6467 0.6467 17 17 ( 5838 1spx_A) ( 2017 1gz6_A) 0.8235 0.7000 1.6212 ( 0 41 91) 0 0.8707 0.7448 17 20 ( 5838 1spx_A) ( 2046 1h2b_A) 0.4118 0.5000 2.5222 ( 0 4 21) 0 0.7054 0.8558 17 14 ( 5838 1spx_A) ( 2090 1h5q_A) 0.9999 0.8499 2.1915 ( 1 85 136) 0 0.9999 0.8499 17 20 ( 5838 1spx_A) ( 2095 1h6d_A) 0.6468 0.7850 5.0745 ( 0 21 55) 0 0.7034 0.8506 17 14 ( 5838 1spx_A) ( 2180 1hdc_A) 0.9406 0.9406 3.8078 ( 0 71 120) 0 0.9406 0.9406 17 17 ( 5838 1spx_A) ( 2189 1hdo_A) 0.7058 0.7999 2.8419 ( 0 28 66) 0 0.7058 0.7999 17 15 ( 5838 1spx_A) ( 2194 1het_A) 0.4706 0.5333 2.6504 ( 0 8 28) 0 0.7056 0.7994 17 15 ( 5838 1spx_A) ( 2270 1hrd_A) 0.4117 0.4375 5.0925 ( 0 6 21) 0 0.5915 0.6248 17 16 ( 5838 1spx_A) ( 2309 1hwx_A) 0.4117 0.4117 5.9094 ( 0 7 21) 0 0.6446 0.6446 17 17 ( 5838 1spx_A) ( 2316 1hxh_A) 0.8822 0.9373 1.6769 ( 1 57 105) 0 0.8822 0.9373 17 16 ( 5838 1spx_A) ( 2328 1hye_A) 0.6467 0.9972 5.2083 ( 0 23 55) 0 0.6467 0.9972 17 11 ( 5838 1spx_A) ( 2330 1hyh_A) 0.6455 0.9867 5.3138 ( 1 22 55) 0 0.6455 0.9867 17 11 ( 5838 1spx_A) ( 2368 1i24_A) 0.4843 0.4279 4.5149 ( 10 50 91) 0 0.7855 0.5144 17 27 ( 5838 1spx_A) ( 2376 1i36_A) 0.2941 0.3333 3.3737 ( 0 1 10) 0 0.5880 0.6663 17 15 ( 5838 1spx_A) ( 2463 1id1_A) 0.6470 0.8458 3.6856 ( 0 21 55) 0 0.6470 0.8458 17 13 ( 5838 1spx_A) ( 2615 1iuk_A) 0.3529 0.4997 6.9435 ( 0 2 15) 0 0.5880 0.8319 17 12 ( 5838 1spx_A) ( 2657 1iy8_A) 0.9412 0.9412 1.5864 ( 0 73 120) 0 0.9412 0.9412 17 17 ( 5838 1spx_A) ( 2674 1iz0_A) 0.4706 0.5333 3.0287 ( 0 8 28) 0 0.7055 0.7993 17 15 ( 5838 1spx_A) ( 2725 1j3v_A) 0.3529 0.4286 4.2845 ( 0 3 15) 0 0.5981 0.7134 17 14 ( 5838 1spx_A) ( 2736 1j5p_A) 0.5293 0.8990 4.5625 ( 0 9 36) 0 0.5294 0.8994 17 10 ( 5838 1spx_A) ( 2781 1ja9_A) 0.9411 0.9411 1.9617 ( 0 70 120) 0 0.9411 0.9411 17 17 ( 5838 1spx_A) ( 2789 1jax_A) 0.4343 0.3824 4.3312 ( 1 6 28) 0 0.5283 0.4495 17 20 ( 5838 1spx_A) ( 3017 1jqb_A) 0.4706 0.5333 2.9129 ( 0 8 28) 0 0.7052 0.7986 17 15 ( 5838 1spx_A) ( 3059 1jtv_A) 0.8822 0.8332 2.7973 ( 0 60 105) 0 0.8822 0.8332 17 18 ( 5838 1spx_A) ( 3072 1jvb_A) 0.4118 0.5385 2.6362 ( 0 4 21) 0 0.6469 0.8455 17 13 ( 5838 1spx_A) ( 3144 1k2w_A) 0.9411 0.9411 2.2698 ( 0 74 120) 0 0.9411 0.9411 17 17 ( 5838 1spx_A) ( 3192 1k6j_A) 0.5882 0.4167 3.0889 ( 0 26 45) 0 0.7564 0.5402 17 24 ( 5838 1spx_A) ( 3257 1kbz_A) 0.7057 0.6315 3.8509 ( 0 28 66) 0 0.7057 0.6315 17 19 ( 5838 1spx_A) ( 3385 1kol_A) 0.5882 0.6250 3.4199 ( 0 16 45) 0 0.7055 0.7495 17 16 ( 5838 1spx_A) ( 3414 1ks9_A) 0.2941 0.2941 2.7554 ( 0 1 10) 0 0.4830 0.4830 17 17 ( 5838 1spx_A) ( 3481 1kyq_A) 0.4343 0.5601 2.8931 ( 1 6 28) 0 0.4706 0.7996 17 10 ( 5838 1spx_A) ( 3561 1l7d_A) 0.3529 0.4000 3.1665 ( 0 4 15) 0 0.5881 0.6665 17 15 ( 5838 1spx_A) ( 3593 1lc0_A) 0.6439 0.8995 7.5264 ( 1 20 55) 0 0.7039 0.9888 17 12 ( 5838 1spx_A) ( 3606 1ldn_A) 0.6456 0.9083 5.1065 ( 1 22 55) 0 0.6461 0.9111 17 12 ( 5838 1spx_A) ( 3610 1leh_A) 0.5256 0.6783 6.1684 ( 1 13 36) 0 0.5678 0.7018 17 13 ( 5838 1spx_A) ( 3633 1li4_A) 0.3529 0.4615 4.0721 ( 0 1 15) 0 0.5881 0.7687 17 13 ( 5838 1spx_A) ( 3637 1lj8_A) 0.5880 0.4999 5.4680 ( 0 15 45) 0 0.6337 0.5439 17 20 ( 5838 1spx_A) ( 3677 1lnq_A) 0.7051 0.6661 5.7846 ( 0 31 66) 0 0.7051 0.6661 17 18 ( 5838 1spx_A) ( 3722 1lss_A) 0.6470 0.9164 3.3657 ( 0 20 55) 0 0.6470 0.9164 17 12 ( 5838 1spx_A) ( 3724 1lsu_A) 0.6470 0.9162 3.6403 ( 0 21 55) 0 0.6470 0.9162 17 12 ( 5838 1spx_A) ( 3734 1lu9_A) 0.4706 0.5714 2.9539 ( 0 9 28) 0 0.6470 0.7855 17 14 ( 5838 1spx_A) ( 3854 1m66_A) 0.3529 0.3750 3.9504 ( 0 4 15) 0 0.6454 0.6852 17 16 ( 5838 1spx_A) ( 4047 1mv8_A) 0.3836 0.3836 5.6562 ( 10 39 78) 0 0.7026 0.7026 17 17 ( 5838 1spx_A) ( 4067 1mx3_A) 0.3529 0.4286 3.4252 ( 0 7 15) 0 0.7632 0.9247 17 14 ( 5838 1spx_A) ( 4131 1n5d_A) 0.8235 0.8235 1.9976 ( 0 42 91) 0 0.8503 0.8503 17 17 ( 5838 1spx_A) ( 4341 1np3_A) 0.2941 0.2941 5.4935 ( 0 1 10) 0 0.5293 0.5293 17 17 ( 5838 1spx_A) ( 4351 1npy_A) 0.4118 0.5384 3.2483 ( 0 6 21) 0 0.6947 0.8832 17 13 ( 5838 1spx_A) ( 4404 1nvm_B) 0.5882 0.8329 4.1263 ( 0 16 45) 0 0.6466 0.9138 17 12 ( 5838 1spx_A) ( 4409 1nvt_A) 0.4118 0.5833 3.0052 ( 0 7 21) 0 0.6470 0.9161 17 12 ( 5838 1spx_A) ( 4417 1nwc_A) 0.3529 0.5453 5.1829 ( 0 5 15) 0 0.6468 0.9980 17 11 ( 5838 1spx_A) ( 4430 1nxq_A) 0.9999 0.9444 2.0456 ( 0 89 136) 0 0.9999 0.9444 17 18 ( 5838 1spx_A) ( 4447 1nyt_A) 0.4118 0.5384 3.1691 ( 0 7 21) 0 0.7056 0.9221 17 13 ( 5838 1spx_A) ( 4499 1o5i_A) 0.9411 0.9411 2.1971 ( 0 69 120) 0 0.9411 0.9411 17 17 ( 5838 1spx_A) ( 4520 1o6z_A) 0.6457 0.9885 5.2323 ( 1 23 55) 0 0.6460 0.9910 17 11 ( 5838 1spx_A) ( 4549 1o89_A) 0.4118 0.5384 3.9161 ( 0 4 21) 0 0.6468 0.8451 17 13 ( 5838 1spx_A) ( 4573 1oaa ) 0.8235 0.8749 2.7045 ( 0 40 91) 0 0.8235 0.8749 17 16 ( 5838 1spx_A) ( 4585 1obb_A) 0.6457 0.8412 4.0585 ( 1 22 55) 0 0.6465 0.8441 17 13 ( 5838 1spx_A) ( 4588 1obf_O) 0.5882 0.8329 4.1406 ( 0 21 45) 0 0.5882 0.8329 17 12 ( 5838 1spx_A) ( 4668 1oi7_A) 0.5882 0.9990 4.0666 ( 0 15 45) 0 0.5882 0.9993 17 10 ( 5838 1spx_A) ( 4730 1ono_A) 0.5844 0.8123 6.4090 ( 1 15 45) 0 0.6445 0.9024 17 12 ( 5838 1spx_A) ( 4739 1ooe_A) 0.7057 0.8566 4.1689 ( 0 33 66) 0 0.7201 0.8566 17 14 ( 5838 1spx_A) ( 4765 1orr_A) 0.8190 0.5379 3.3884 ( 2 43 91) 0 0.8190 0.5379 17 26 ( 5838 1spx_A) ( 4863 1p1j_A) 0.5881 0.4000 4.8935 ( 0 19 45) 0 0.5881 0.4000 17 25 ( 5838 1spx_A) ( 4943 1p9l_A) 0.6469 0.9982 4.6602 ( 0 23 55) 0 0.6469 0.9988 17 11 ( 5838 1spx_A) ( 5029 1pjq_A) 0.4706 0.7999 2.8907 ( 0 5 28) 0 0.5225 0.8200 17 10 ( 5838 1spx_A) ( 5045 1pl7_A) 0.4118 0.5385 2.1551 ( 0 4 21) 0 0.7054 0.9211 17 13 ( 5838 1spx_A) ( 5082 1pqw_A) 0.4706 0.5000 2.9701 ( 0 6 28) 0 0.7055 0.7495 17 16 ( 5838 1spx_A) ( 5097 1psd_A) 0.4117 0.5831 5.2193 ( 0 6 21) 0 0.6468 0.9152 17 12 ( 5838 1spx_A) ( 5140 1px0_A) 0.8822 0.9373 3.0165 ( 0 61 105) 0 0.8822 0.9373 17 16 ( 5838 1spx_A) ( 5227 1q7c_A) 0.9411 0.8888 1.6018 ( 1 72 120) 0 0.9889 0.9361 17 18 ( 5838 1spx_A) ( 5362 1qki_A) 0.5881 0.8328 4.2251 ( 0 16 45) 0 0.6425 0.8919 17 12 ( 5838 1spx_A) ( 5387 1qmg_A) 0.3529 0.3158 3.8801 ( 0 6 15) 0 0.5855 0.5406 17 19 ( 5838 1spx_A) ( 5406 1qor_A) 0.4118 0.5385 2.7519 ( 0 5 21) 0 0.7054 0.9211 17 13 ( 5838 1spx_A) ( 5409 1qp8_A) 0.3529 0.4615 3.5846 ( 0 3 15) 0 0.7048 0.9190 17 13 ( 5838 1spx_A) ( 5444 1qsg_A) 0.9997 0.9442 2.8757 ( 1 84 136) 0 0.9997 0.9442 17 18 ( 5838 1spx_A) ( 5493 1qyc_A) 0.8229 0.5832 3.9415 ( 1 44 91) 0 0.8229 0.5832 17 24 ( 5838 1spx_A) ( 5571 1r6d_A) 0.8189 0.5825 3.4855 ( 2 43 91) 0 0.8189 0.5825 17 24 ( 5838 1spx_A) ( 5654 1rjw_A) 0.4118 0.4667 2.7592 ( 0 4 21) 0 0.7054 0.7991 17 15 ( 5838 1spx_A) ( 5665 1rkx_A) 0.7729 0.6475 3.9079 ( 4 45 91) 0 0.7729 0.6475 17 21 ( 5838 1spx_A) ( 5786 1say_A) 0.4117 0.5830 5.8069 ( 0 3 21) 0 0.6459 0.9103 17 12 ( 5838 1spx_A) ( 5838 1spx_A) 1.0000 1.0000 0.0000 ( 0 89 136) 0 1.0000 1.0000 17 17 ( 5838 1spx_A) ( 5877 1t2d_A) 0.6454 0.9857 4.7714 ( 1 21 55) 0 0.6463 0.9938 17 11 ( 5838 1spx_A) ( 5942 1u8x_X) 0.6467 0.9146 5.3913 ( 0 21 55) 0 0.6467 0.9146 17 12 ( 5838 1spx_A) ( 5954 1uay_A) 0.8235 0.8749 2.3255 ( 0 46 91) 0 0.8576 0.9046 17 16 ( 5838 1spx_A) ( 6085 1ur5_A) 0.6458 0.9096 4.9297 ( 1 23 55) 0 0.6466 0.9139 17 12 ( 5838 1spx_A) ( 6114 1uuf_A) 0.4118 0.5000 3.4194 ( 0 5 21) 0 0.7047 0.8539 17 14 ( 5838 1spx_A) ( 6257 1vi2_A) 0.3529 0.4615 2.3993 ( 0 2 15) 0 0.7053 0.9209 17 13 ( 5838 1spx_A) ( 6274 1vj0_A) 0.4118 0.4375 2.5803 ( 0 4 21) 0 0.6470 0.6874 17 16 ( 5838 1spx_A) ( 6276 1vj1_A) 0.4118 0.5000 3.1436 ( 0 5 21) 0 0.7055 0.8562 17 14 ( 5838 1spx_A) ( 6292 1vjp_A) 0.5881 0.7139 4.8280 ( 0 18 45) 0 0.6468 0.7849 17 14 ( 5838 1spx_A) ( 6341 1xcb_A) 0.4117 0.8741 4.6178 ( 0 6 21) 0 0.4117 0.8742 17 8 ( 5838 1spx_A) ( 6388 2ae1 ) 0.9998 0.9998 2.3627 ( 1 84 136) 0 0.9998 0.9998 17 17 ( 5838 1spx_A) ( 6420 2cmd ) 0.6454 0.9073 4.7811 ( 1 21 55) 0 0.6464 0.9131 17 12 ( 5838 1spx_A) ( 6426 2dap ) 0.5881 0.9977 4.9623 ( 0 13 45) 0 0.5881 0.9982 17 10 ( 5838 1spx_A) ( 6497 2nac_A) 0.3529 0.4615 3.3500 ( 0 3 15) 0 0.6465 0.8441 17 13 ( 5838 1spx_A) ( 6505 2pgd ) 0.2941 0.3571 4.0721 ( 0 1 10) 0 0.6096 0.7001 17 14 ( 5838 1spx_A) ( 6627 6ldh ) 0.7056 0.9221 4.4261 ( 0 24 66) 0 0.7056 0.9221 17 13 -------------------------------------------------------------------------------------------------------------------------