------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5877 1t2d_A) ( 42 1a4i_A) 0.5587 0.5886 3.0891 ( 1 7 21) 0 0.6362 0.6997 11 10 ( 5877 1t2d_A) ( 265 1b16_A) 0.9935 0.6865 4.1945 ( 1 26 55) 0 0.9935 0.6865 11 16 ( 5877 1t2d_A) ( 312 1b7g_O) 0.9040 0.7670 5.5582 ( 1 27 45) 0 0.9040 0.7670 11 13 ( 5877 1t2d_A) ( 319 1b8p_A) 0.9967 0.9967 2.8727 ( 1 30 55) 0 0.9967 0.9967 11 11 ( 5877 1t2d_A) ( 352 1bdb ) 0.9937 0.6106 4.0035 ( 1 26 55) 0 0.9937 0.6106 11 18 ( 5877 1t2d_A) ( 377 1bg6 ) 0.9993 0.6111 3.6897 ( 0 37 55) 0 0.9993 0.6111 11 18 ( 5877 1t2d_A) ( 506 1c1d_A) 0.6362 0.5832 4.8085 ( 0 2 21) 0 0.6380 0.6038 11 12 ( 5877 1t2d_A) ( 707 1cyd_A) 0.9969 0.6108 5.3653 ( 0 22 55) 0 0.9969 0.6108 11 18 ( 5877 1t2d_A) ( 781 1db3_A) 0.8459 0.4522 4.5408 ( 2 24 45) 0 0.8459 0.4586 11 22 ( 5877 1t2d_A) ( 847 1dih ) 0.5850 0.7341 3.1128 ( 1 8 21) 0 0.6363 0.9992 11 7 ( 5877 1t2d_A) ( 873 1dlj_A) 0.9994 0.6874 3.4790 ( 0 37 55) 0 0.9994 0.6874 11 16 ( 5877 1t2d_A) ( 906 1dpg_A) 0.9644 0.8301 3.8113 ( 2 32 55) 0 0.9644 0.8301 11 13 ( 5877 1t2d_A) ( 972 1dxy ) 0.6364 0.4375 2.3409 ( 0 11 21) 0 0.8176 0.5725 11 16 ( 5877 1t2d_A) ( 1053 1e6u_A) 0.6961 0.3626 3.5007 ( 1 11 28) 0 0.8165 0.4498 11 22 ( 5877 1t2d_A) ( 1071 1e7w_A) 0.9895 0.6458 4.6958 ( 1 23 55) 0 0.9895 0.6458 11 17 ( 5877 1t2d_A) ( 1094 1ebf_A) 0.4545 0.4166 5.8235 ( 0 3 10) 0 0.6363 0.5833 11 12 ( 5877 1t2d_A) ( 1117 1edz_A) 0.5043 0.4719 2.1885 ( 1 7 15) 0 0.6835 0.6371 11 12 ( 5877 1t2d_A) ( 1189 1ek6_A) 0.9951 0.4998 3.9128 ( 1 28 55) 0 0.9951 0.4998 11 22 ( 5877 1t2d_A) ( 1219 1enp ) 0.9419 0.6055 5.0578 ( 2 28 55) 0 0.9476 0.6061 11 18 ( 5877 1t2d_A) ( 1221 1eny ) 0.9422 0.6397 4.8421 ( 2 28 55) 0 0.9422 0.6397 11 17 ( 5877 1t2d_A) ( 1242 1eq2_A) 0.8457 0.4522 4.8835 ( 2 24 45) 0 0.9042 0.4914 11 22 ( 5877 1t2d_A) ( 1355 1f14_A) 0.9795 0.7288 2.7566 ( 2 37 55) 0 0.9795 0.7288 11 15 ( 5877 1t2d_A) ( 1436 1f8f_A) 0.8973 0.7107 3.3596 ( 1 19 45) 0 0.8973 0.7107 11 14 ( 5877 1t2d_A) ( 1487 1ff9_A) 0.9431 0.7200 4.0029 ( 2 28 55) 0 0.9941 0.7321 11 15 ( 5877 1t2d_A) ( 1531 1fjh_A) 0.8172 0.5623 5.1719 ( 0 10 36) 0 0.9059 0.6245 11 16 ( 5877 1t2d_A) ( 1560 1fmc_A) 0.9894 0.6458 4.7566 ( 1 23 55) 0 0.9894 0.6458 11 17 ( 5877 1t2d_A) ( 1804 1gdh_A) 0.7272 0.5714 3.0903 ( 0 15 28) 0 0.8714 0.7023 11 14 ( 5877 1t2d_A) ( 1807 1gee_A) 0.9929 0.5496 4.6189 ( 1 26 55) 0 0.9969 0.5498 11 20 ( 5877 1t2d_A) ( 1809 1geg_A) 0.9920 0.6461 4.6041 ( 1 25 55) 0 0.9920 0.6461 11 17 ( 5877 1t2d_A) ( 1899 1gpj_A) 0.9079 0.8326 4.7027 ( 0 26 45) 0 0.9079 0.8326 11 12 ( 5877 1t2d_A) ( 1922 1gr0_A) 0.8095 0.6402 3.4909 ( 1 18 36) 0 0.8095 0.6740 11 14 ( 5877 1t2d_A) ( 1948 1gtm_A) 0.5454 0.3750 2.6341 ( 0 7 15) 0 0.6793 0.5323 11 16 ( 5877 1t2d_A) ( 1956 1gu7_A) 0.9027 0.5875 4.4335 ( 1 23 45) 0 0.9027 0.5875 11 17 ( 5877 1t2d_A) ( 2004 1gy8_A) 0.9548 0.4770 4.3730 ( 2 30 55) 0 0.9852 0.4779 11 23 ( 5877 1t2d_A) ( 2016 1gz3_A) 0.8174 0.5293 4.9286 ( 0 12 36) 0 0.8174 0.5427 11 17 ( 5877 1t2d_A) ( 2017 1gz6_A) 0.9081 0.5000 4.4930 ( 0 16 45) 0 0.9081 0.5416 11 20 ( 5877 1t2d_A) ( 2046 1h2b_A) 0.9010 0.7118 3.2343 ( 1 21 45) 0 0.9033 0.7125 11 14 ( 5877 1t2d_A) ( 2090 1h5q_A) 0.9928 0.5496 4.6728 ( 1 26 55) 0 0.9928 0.5496 11 20 ( 5877 1t2d_A) ( 2095 1h6d_A) 0.9039 0.7127 4.0228 ( 1 24 45) 0 0.9039 0.7127 11 14 ( 5877 1t2d_A) ( 2180 1hdc_A) 0.9892 0.6458 4.8580 ( 1 23 55) 0 0.9892 0.6458 11 17 ( 5877 1t2d_A) ( 2189 1hdo_A) 0.9007 0.6649 3.9701 ( 1 21 45) 0 0.9041 0.6656 11 15 ( 5877 1t2d_A) ( 2194 1het_A) 0.8973 0.6641 3.1943 ( 1 19 45) 0 0.8977 0.6642 11 15 ( 5877 1t2d_A) ( 2270 1hrd_A) 0.4545 0.3125 5.4551 ( 0 5 10) 0 0.7451 0.5491 11 16 ( 5877 1t2d_A) ( 2309 1hwx_A) 0.5454 0.3529 4.6265 ( 0 4 15) 0 0.6799 0.5066 11 17 ( 5877 1t2d_A) ( 2316 1hxh_A) 0.9894 0.6858 4.7723 ( 1 23 55) 0 0.9894 0.6858 11 16 ( 5877 1t2d_A) ( 2328 1hye_A) 0.9985 0.9985 1.6046 ( 1 36 55) 0 0.9985 0.9985 11 11 ( 5877 1t2d_A) ( 2330 1hyh_A) 0.9999 0.9999 1.8233 ( 0 37 55) 0 0.9999 0.9999 11 11 ( 5877 1t2d_A) ( 2368 1i24_A) 0.9958 0.4074 3.6323 ( 1 29 55) 0 0.9958 0.4074 11 27 ( 5877 1t2d_A) ( 2376 1i36_A) 0.9088 0.6666 3.4446 ( 0 27 45) 0 0.9088 0.6666 11 15 ( 5877 1t2d_A) ( 2463 1id1_A) 0.9966 0.8447 3.7718 ( 1 31 55) 0 0.9966 0.8447 11 13 ( 5877 1t2d_A) ( 2615 1iuk_A) 0.7271 0.6666 3.6786 ( 0 12 28) 0 0.9066 0.8317 11 12 ( 5877 1t2d_A) ( 2657 1iy8_A) 0.9983 0.6469 4.6286 ( 0 23 55) 0 0.9983 0.6469 11 17 ( 5877 1t2d_A) ( 2674 1iz0_A) 0.8370 0.6490 3.2902 ( 2 23 45) 0 0.9061 0.7090 11 15 ( 5877 1t2d_A) ( 2725 1j3v_A) 0.9089 0.7142 3.0094 ( 0 27 45) 0 0.9089 0.7142 11 14 ( 5877 1t2d_A) ( 2736 1j5p_A) 0.7272 0.7998 3.3708 ( 0 14 28) 0 0.8072 0.8825 11 10 ( 5877 1t2d_A) ( 2781 1ja9_A) 0.9914 0.6461 4.2670 ( 1 24 55) 0 0.9914 0.6461 11 17 ( 5877 1t2d_A) ( 2789 1jax_A) 0.9773 0.5488 2.6795 ( 2 36 55) 0 0.9773 0.5488 11 20 ( 5877 1t2d_A) ( 3017 1jqb_A) 0.8180 0.6000 3.2491 ( 0 17 36) 0 0.8890 0.6622 11 15 ( 5877 1t2d_A) ( 3059 1jtv_A) 0.8094 0.5857 5.2843 ( 3 28 55) 0 0.9896 0.6102 11 18 ( 5877 1t2d_A) ( 3072 1jvb_A) 0.8112 0.6893 2.7074 ( 1 19 36) 0 0.8133 0.6902 11 13 ( 5877 1t2d_A) ( 3144 1k2w_A) 0.9926 0.6462 4.8165 ( 1 26 55) 0 0.9926 0.6462 11 17 ( 5877 1t2d_A) ( 3192 1k6j_A) 0.9928 0.4582 3.9935 ( 1 25 55) 0 0.9928 0.4582 11 24 ( 5877 1t2d_A) ( 3257 1kbz_A) 0.7271 0.4210 4.0953 ( 0 8 28) 0 0.9794 0.5775 11 19 ( 5877 1t2d_A) ( 3385 1kol_A) 0.8464 0.6140 3.5344 ( 2 24 45) 0 0.9059 0.6443 11 16 ( 5877 1t2d_A) ( 3414 1ks9_A) 0.9059 0.5879 4.1104 ( 1 28 45) 0 0.9059 0.5879 11 17 ( 5877 1t2d_A) ( 3481 1kyq_A) 0.6837 0.7340 3.8105 ( 1 10 28) 0 0.6837 0.7340 11 10 ( 5877 1t2d_A) ( 3561 1l7d_A) 0.7269 0.5333 4.7410 ( 0 13 28) 0 0.8177 0.5999 11 15 ( 5877 1t2d_A) ( 3593 1lc0_A) 0.8179 0.7498 3.7979 ( 0 17 36) 0 0.8179 0.7498 11 12 ( 5877 1t2d_A) ( 3606 1ldn_A) 0.9985 0.9157 1.7132 ( 1 36 55) 0 0.9985 0.9157 11 12 ( 5877 1t2d_A) ( 3610 1leh_A) 0.7267 0.6151 5.2746 ( 0 9 28) 0 0.7267 0.6151 11 13 ( 5877 1t2d_A) ( 3633 1li4_A) 0.8174 0.6920 4.9071 ( 0 14 36) 0 0.8174 0.6920 11 13 ( 5877 1t2d_A) ( 3637 1lj8_A) 0.9052 0.4998 5.4197 ( 1 30 45) 0 0.9052 0.4998 11 20 ( 5877 1t2d_A) ( 3677 1lnq_A) 0.9971 0.6109 3.4114 ( 1 32 55) 0 0.9971 0.6109 11 18 ( 5877 1t2d_A) ( 3722 1lss_A) 0.9961 0.9141 3.8542 ( 1 30 55) 0 0.9961 0.9141 11 12 ( 5877 1t2d_A) ( 3724 1lsu_A) 0.8545 0.7964 3.5042 ( 2 25 45) 0 0.8545 0.8018 11 12 ( 5877 1t2d_A) ( 3734 1lu9_A) 0.6491 0.5944 4.3573 ( 3 21 45) 0 0.8982 0.7110 11 14 ( 5877 1t2d_A) ( 3854 1m66_A) 0.9989 0.6873 4.0780 ( 0 36 55) 0 0.9989 0.6873 11 16 ( 5877 1t2d_A) ( 4047 1mv8_A) 0.9979 0.6468 3.7320 ( 1 37 55) 0 0.9979 0.6468 11 17 ( 5877 1t2d_A) ( 4067 1mx3_A) 0.7005 0.5988 4.3629 ( 2 17 36) 0 0.9009 0.7118 11 14 ( 5877 1t2d_A) ( 4131 1n5d_A) 0.9058 0.6340 3.8857 ( 2 24 55) 0 0.9352 0.6386 11 17 ( 5877 1t2d_A) ( 4341 1np3_A) 0.9791 0.6446 3.6690 ( 2 37 55) 0 0.9791 0.6446 11 17 ( 5877 1t2d_A) ( 4351 1npy_A) 0.7195 0.6120 4.2455 ( 1 16 28) 0 0.8543 0.7437 11 13 ( 5877 1t2d_A) ( 4404 1nvm_B) 0.8180 0.7499 3.5007 ( 0 22 36) 0 0.9075 0.8323 11 12 ( 5877 1t2d_A) ( 4409 1nvt_A) 0.8182 0.7500 2.1814 ( 0 20 36) 0 0.8613 0.8012 11 12 ( 5877 1t2d_A) ( 4417 1nwc_A) 0.8121 0.8121 5.7015 ( 1 21 36) 0 0.9021 0.9021 11 11 ( 5877 1t2d_A) ( 4430 1nxq_A) 0.9165 0.6025 4.7491 ( 2 25 55) 0 0.9165 0.6025 11 18 ( 5877 1t2d_A) ( 4447 1nyt_A) 0.9043 0.7671 2.8641 ( 1 24 45) 0 0.9043 0.7671 11 13 ( 5877 1t2d_A) ( 4499 1o5i_A) 0.9966 0.6467 5.4565 ( 0 20 55) 0 0.9966 0.6467 11 17 ( 5877 1t2d_A) ( 4520 1o6z_A) 0.9999 0.9999 2.0186 ( 0 36 55) 0 0.9999 0.9999 11 11 ( 5877 1t2d_A) ( 4549 1o89_A) 0.8180 0.6922 3.4947 ( 0 17 36) 0 0.8368 0.7347 11 13 ( 5877 1t2d_A) ( 4573 1oaa ) 0.9982 0.6872 4.6348 ( 0 19 55) 0 0.9982 0.6872 11 16 ( 5877 1t2d_A) ( 4585 1obb_A) 0.9978 0.8452 2.2325 ( 1 33 55) 0 0.9978 0.8452 11 13 ( 5877 1t2d_A) ( 4588 1obf_O) 0.8177 0.7497 4.2274 ( 0 22 36) 0 0.8177 0.7549 11 12 ( 5877 1t2d_A) ( 4668 1oi7_A) 0.8675 0.9362 2.6133 ( 2 27 45) 0 0.8675 0.9362 11 10 ( 5877 1t2d_A) ( 4730 1ono_A) 0.6363 0.5833 3.8537 ( 0 12 21) 0 0.8256 0.7757 11 12 ( 5877 1t2d_A) ( 4739 1ooe_A) 0.8987 0.7111 4.5833 ( 1 20 45) 0 0.9015 0.7513 11 14 ( 5877 1t2d_A) ( 4765 1orr_A) 0.9056 0.4214 4.1796 ( 2 24 55) 0 0.9083 0.4214 11 26 ( 5877 1t2d_A) ( 4863 1p1j_A) 0.7179 0.3577 4.9144 ( 2 18 36) 0 0.7179 0.3577 11 25 ( 5877 1t2d_A) ( 4943 1p9l_A) 0.8075 0.8075 2.9368 ( 1 17 36) 0 0.9006 0.9006 11 11 ( 5877 1t2d_A) ( 5029 1pjq_A) 0.5455 0.5601 2.7806 ( 2 12 28) 0 0.6837 0.7341 11 10 ( 5877 1t2d_A) ( 5045 1pl7_A) 0.8126 0.7217 4.5368 ( 2 21 45) 0 0.8533 0.7432 11 13 ( 5877 1t2d_A) ( 5082 1pqw_A) 0.9981 0.6872 4.7179 ( 0 22 55) 0 0.9981 0.6872 11 16 ( 5877 1t2d_A) ( 5097 1psd_A) 0.6364 0.5833 2.3644 ( 0 11 21) 0 0.8176 0.7547 11 12 ( 5877 1t2d_A) ( 5140 1px0_A) 0.8251 0.6095 5.1106 ( 2 22 45) 0 0.9410 0.6773 11 16 ( 5877 1t2d_A) ( 5227 1q7c_A) 0.9891 0.6102 4.9457 ( 1 23 55) 0 0.9891 0.6102 11 18 ( 5877 1t2d_A) ( 5362 1qki_A) 0.8459 0.7904 4.5716 ( 2 24 45) 0 0.8459 0.7904 11 12 ( 5877 1t2d_A) ( 5387 1qmg_A) 0.9970 0.5787 4.4972 ( 1 36 55) 0 0.9970 0.5787 11 19 ( 5877 1t2d_A) ( 5406 1qor_A) 0.9961 0.8444 3.9144 ( 1 30 55) 0 0.9961 0.8444 11 13 ( 5877 1t2d_A) ( 5409 1qp8_A) 0.6364 0.5385 1.2766 ( 0 10 21) 0 0.8831 0.7879 11 13 ( 5877 1t2d_A) ( 5444 1qsg_A) 0.9420 0.6055 4.9828 ( 2 28 55) 0 0.9420 0.6055 11 18 ( 5877 1t2d_A) ( 5493 1qyc_A) 0.9546 0.4573 4.5417 ( 2 30 55) 0 0.9938 0.4582 11 24 ( 5877 1t2d_A) ( 5571 1r6d_A) 0.9358 0.4568 3.6734 ( 2 27 55) 0 0.9485 0.4571 11 24 ( 5877 1t2d_A) ( 5654 1rjw_A) 0.8370 0.6490 3.4060 ( 2 23 45) 0 0.9051 0.6687 11 15 ( 5877 1t2d_A) ( 5665 1rkx_A) 0.9431 0.5212 3.9667 ( 2 28 55) 0 0.9431 0.5212 11 21 ( 5877 1t2d_A) ( 5786 1say_A) 0.9082 0.8327 4.4352 ( 0 23 45) 0 0.9082 0.8327 11 12 ( 5877 1t2d_A) ( 5838 1spx_A) 0.9857 0.6454 4.7714 ( 1 21 55) 0 0.9938 0.6463 11 17 ( 5877 1t2d_A) ( 5877 1t2d_A) 1.0000 1.0000 0.0000 ( 0 37 55) 0 1.0000 1.0000 11 11 ( 5877 1t2d_A) ( 5942 1u8x_X) 0.9979 0.9153 2.7593 ( 1 34 55) 0 0.9979 0.9153 11 12 ( 5877 1t2d_A) ( 5954 1uay_A) 0.8966 0.6230 4.5656 ( 1 19 45) 0 0.8966 0.6230 11 16 ( 5877 1t2d_A) ( 6085 1ur5_A) 0.9999 0.9166 2.0270 ( 0 35 55) 0 0.9999 0.9166 11 12 ( 5877 1t2d_A) ( 6114 1uuf_A) 0.9043 0.7129 4.3395 ( 1 25 45) 0 0.9047 0.7172 11 14 ( 5877 1t2d_A) ( 6257 1vi2_A) 0.9090 0.7692 2.6424 ( 0 28 45) 0 0.9090 0.7692 11 13 ( 5877 1t2d_A) ( 6274 1vj0_A) 0.9034 0.6241 3.1767 ( 1 23 45) 0 0.9034 0.6241 11 16 ( 5877 1t2d_A) ( 6276 1vj1_A) 0.9006 0.7117 4.1679 ( 1 21 45) 0 0.9006 0.7117 11 14 ( 5877 1t2d_A) ( 6292 1vjp_A) 0.8454 0.6930 5.2419 ( 2 24 45) 0 0.8454 0.6930 11 14 ( 5877 1t2d_A) ( 6341 1xcb_A) 0.6363 0.8748 3.0576 ( 0 12 21) 0 0.6363 0.8748 11 8 ( 5877 1t2d_A) ( 6388 2ae1 ) 0.9879 0.6457 4.6326 ( 1 22 55) 0 0.9916 0.6461 11 17 ( 5877 1t2d_A) ( 6420 2cmd ) 0.9998 0.9166 2.5449 ( 0 36 55) 0 0.9998 0.9166 11 12 ( 5877 1t2d_A) ( 6426 2dap ) 0.9049 0.9933 3.1783 ( 1 25 45) 0 0.9049 0.9933 11 10 ( 5877 1t2d_A) ( 6497 2nac_A) 0.8937 0.7624 4.8608 ( 1 18 45) 0 0.8937 0.7624 11 13 ( 5877 1t2d_A) ( 6505 2pgd ) 0.9057 0.7133 3.8360 ( 1 27 45) 0 0.9057 0.7133 11 14 ( 5877 1t2d_A) ( 6627 6ldh ) 0.9983 0.8454 2.6010 ( 1 36 55) 0 0.9983 0.8454 11 13 -------------------------------------------------------------------------------------------------------------------------