------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1379 1f2v_A) ( 6 1a04_A) 0.6213 0.8863 4.0910 ( 1 16 45) 0 0.6213 0.8863 16 11 ( 1379 1f2v_A) ( 26 1a2o_A) 0.5987 0.8182 4.0097 ( 2 19 45) 0 0.6029 0.8829 16 10 ( 1379 1f2v_A) ( 90 1a9x_B) 0.3125 0.2778 4.3873 ( 0 6 10) 0 0.6848 0.6096 16 18 ( 1379 1f2v_A) ( 256 1b00_A) 0.6248 0.9978 4.9078 ( 0 15 45) 0 0.6248 0.9978 16 10 ( 1379 1f2v_A) ( 266 1b1c_A) 0.5859 0.7365 5.9133 ( 2 17 45) 0 0.5983 0.7791 16 11 ( 1379 1f2v_A) ( 428 1bmt_A) 0.3750 0.5454 4.1363 ( 0 2 15) 0 0.5624 0.8174 16 11 ( 1379 1f2v_A) ( 477 1bvy_F) 0.5428 0.7925 5.1170 ( 2 18 36) 0 0.5614 0.9815 16 9 ( 1379 1f2v_A) ( 523 1c4k_A) 0.4947 0.8760 5.6427 ( 1 11 28) 0 0.4947 0.8760 16 8 ( 1379 1f2v_A) ( 562 1ccw_A) 0.5250 0.6793 5.1223 ( 2 15 36) 0 0.5250 0.7636 16 10 ( 1379 1f2v_A) ( 745 1d4a_A) 0.3125 0.3333 5.8763 ( 0 4 10) 0 0.6437 0.6754 16 15 ( 1379 1f2v_A) ( 786 1dbw_A) 0.6231 0.9806 4.1937 ( 1 19 45) 0 0.6231 0.9806 16 10 ( 1379 1f2v_A) ( 793 1dcf_A) 0.5931 0.7930 4.2157 ( 2 18 45) 0 0.5931 0.8813 16 10 ( 1379 1f2v_A) ( 971 1dxy ) 0.5000 0.8882 4.2179 ( 0 9 28) 0 0.5529 0.8882 16 9 ( 1379 1f2v_A) ( 980 1dz3_A) 0.5603 0.8784 3.6630 ( 1 16 36) 0 0.5603 0.8784 16 10 ( 1379 1f2v_A) ( 1042 1e5d_A) 0.5662 0.6995 5.8115 ( 2 15 45) 0 0.5662 0.8966 16 10 ( 1379 1f2v_A) ( 1177 1eiw_A) 0.4747 0.5529 4.3735 ( 3 17 36) 0 0.4973 0.8454 16 9 ( 1379 1f2v_A) ( 1252 1es9_A) 0.5861 0.7074 3.8681 ( 2 17 45) 0 0.6848 0.9057 16 12 ( 1379 1f2v_A) ( 1253 1esc ) 0.2500 0.2353 6.6519 ( 0 0 6) 0 0.4983 0.4792 16 17 ( 1379 1f2v_A) ( 1266 1euc_B) 0.6213 0.8184 3.8433 ( 1 16 45) 0 0.7465 0.9855 16 12 ( 1379 1f2v_A) ( 1379 1f2v_A) 1.0000 1.0000 0.0000 ( 0 92 120) 0 1.0000 1.0000 16 16 ( 1379 1f2v_A) ( 1397 1f4p_A) 0.5155 0.6630 5.2147 ( 2 14 36) 0 0.5623 0.9958 16 9 ( 1379 1f2v_A) ( 1443 1f8y_A) 0.4676 0.5250 4.6613 ( 2 11 36) 0 0.4987 0.7192 16 11 ( 1379 1f2v_A) ( 1516 1fjg_B) 0.4984 0.6602 3.7322 ( 1 15 28) 0 0.4984 0.6602 16 12 ( 1379 1f2v_A) ( 1547 1flc_A) 0.4887 0.4381 3.2003 ( 1 9 28) 0 0.5557 0.4962 16 18 ( 1379 1f2v_A) ( 1659 1fye_A) 0.3125 0.2778 7.8465 ( 0 4 10) 0 0.6221 0.5614 16 18 ( 1379 1f2v_A) ( 1662 1fyx_A) 0.4336 0.6632 3.9587 ( 1 10 21) 0 0.4779 0.6632 16 10 ( 1379 1f2v_A) ( 1700 1g2i_A) 0.3748 0.4281 9.4210 ( 0 9 15) 0 0.6249 0.7117 16 14 ( 1379 1f2v_A) ( 1803 1gdh_A) 0.5000 0.7997 3.8598 ( 0 7 28) 0 0.5000 0.7997 16 10 ( 1379 1f2v_A) ( 1901 1gpm_A) 0.3125 0.3125 6.8565 ( 0 0 10) 0 0.6221 0.6221 16 16 ( 1379 1f2v_A) ( 2027 1h05_A) 0.5576 0.7886 4.0842 ( 1 13 36) 0 0.5623 0.8168 16 11 ( 1379 1f2v_A) ( 2427 1i7q_B) 0.3125 0.2778 4.0153 ( 0 6 10) 0 0.4177 0.4096 16 18 ( 1379 1f2v_A) ( 2470 1iex_A) 0.6837 0.9009 4.5137 ( 1 18 55) 0 0.6837 0.9009 16 12 ( 1379 1f2v_A) ( 2714 1j2y_A) 0.5602 0.8039 5.1504 ( 1 16 36) 0 0.5602 0.8039 16 11 ( 1379 1f2v_A) ( 2729 1j4a_A) 0.5624 0.8991 4.4499 ( 0 11 36) 0 0.5624 0.8991 16 10 ( 1379 1f2v_A) ( 2809 1jbe_A) 0.6226 0.9760 4.5906 ( 1 18 45) 0 0.6226 0.9760 16 10 ( 1379 1f2v_A) ( 3034 1jrl_A) 0.5558 0.8393 4.8943 ( 1 12 36) 0 0.5558 0.8393 16 10 ( 1379 1f2v_A) ( 3073 1jvn_A) 0.3125 0.2631 6.5395 ( 0 4 10) 0 0.6233 0.5256 16 19 ( 1379 1f2v_A) ( 3189 1k66_A) 0.6221 0.8910 3.8052 ( 1 17 45) 0 0.6221 0.8910 16 11 ( 1379 1f2v_A) ( 3190 1k68_A) 0.6221 0.9716 3.4979 ( 1 17 45) 0 0.6221 0.9716 16 10 ( 1379 1f2v_A) ( 3199 1k7c_A) 0.3125 0.3333 2.9454 ( 0 3 10) 0 0.4999 0.5331 16 15 ( 1379 1f2v_A) ( 3234 1k9v_F) 0.3125 0.2778 4.3088 ( 0 6 10) 0 0.5861 0.5327 16 18 ( 1379 1f2v_A) ( 3238 1ka9_H) 0.3125 0.3125 4.4962 ( 0 6 10) 0 0.6387 0.6387 16 16 ( 1379 1f2v_A) ( 3295 1kgs_A) 0.5558 0.8397 4.1581 ( 1 12 36) 0 0.5623 0.8983 16 10 ( 1379 1f2v_A) ( 3412 1krw_A) 0.6221 0.9715 3.7494 ( 1 17 45) 0 0.6221 0.9715 16 10 ( 1379 1f2v_A) ( 3462 1kwg_A) 0.3125 0.3125 7.0142 ( 0 0 10) 0 0.6234 0.6234 16 16 ( 1379 1f2v_A) ( 3560 1l7d_A) 0.2500 0.2353 3.9201 ( 0 2 6) 0 0.6870 0.6467 16 17 ( 1379 1f2v_A) ( 3581 1l9x_A) 0.2887 0.2129 3.6458 ( 1 4 10) 0 0.6248 0.4660 16 23 ( 1379 1f2v_A) ( 3632 1li4_A) 0.3750 0.3333 3.0784 ( 0 6 15) 0 0.6863 0.6104 16 18 ( 1379 1f2v_A) ( 3801 1m2e_A) 0.5325 0.7337 5.0239 ( 2 16 36) 0 0.5325 0.8459 16 9 ( 1379 1f2v_A) ( 3896 1mb3_A) 0.6249 0.9991 3.8837 ( 0 16 45) 0 0.6249 0.9991 16 10 ( 1379 1f2v_A) ( 4066 1mx3_A) 0.5427 0.7178 5.2043 ( 1 9 36) 0 0.5458 0.7304 16 11 ( 1379 1f2v_A) ( 4130 1n57_A) 0.3125 0.2778 5.2143 ( 0 5 10) 0 0.6723 0.6025 16 18 ( 1379 1f2v_A) ( 4185 1nat ) 0.6249 0.9993 3.6448 ( 0 13 45) 0 0.6249 0.9993 16 10 ( 1379 1f2v_A) ( 4323 1nni_1) 0.5575 0.7881 5.2077 ( 1 13 36) 0 0.6136 0.8449 16 11 ( 1379 1f2v_A) ( 4433 1ny5_A) 0.6241 0.9908 7.0493 ( 0 12 45) 0 0.6241 0.9908 16 10 ( 1379 1f2v_A) ( 4474 1o1y_A) 0.2500 0.2105 7.7742 ( 0 3 6) 0 0.5605 0.4728 16 19 ( 1379 1f2v_A) ( 4590 1obo_A) 0.5859 0.7643 5.5839 ( 2 17 45) 0 0.5859 0.8972 16 10 ( 1379 1f2v_A) ( 4669 1oi7_A) 0.5624 0.8177 4.2537 ( 0 11 36) 0 0.5624 0.8177 16 11 ( 1379 1f2v_A) ( 4787 1ou0_A) 0.9997 0.9409 2.8976 ( 1 86 120) 0 0.9997 0.9409 16 17 ( 1379 1f2v_A) ( 4813 1oxb_B) 0.5931 0.7930 4.1718 ( 2 18 45) 0 0.5931 0.8641 16 10 ( 1379 1f2v_A) ( 4871 1p2f_A) 0.6203 0.9549 4.3452 ( 1 15 45) 0 0.6242 0.9919 16 10 ( 1379 1f2v_A) ( 4905 1p5f_A) 0.3706 0.4201 5.0066 ( 1 8 15) 0 0.7416 0.8411 16 14 ( 1379 1f2v_A) ( 4916 1p6u_A) 0.5155 0.6473 4.3083 ( 2 14 36) 0 0.5155 0.7339 16 10 ( 1379 1f2v_A) ( 4926 1p80_A) 0.5611 0.6884 4.2519 ( 1 18 36) 0 0.6235 0.7650 16 13 ( 1379 1f2v_A) ( 5096 1psd_A) 0.4375 0.7775 3.8339 ( 0 2 21) 0 0.4375 0.7775 16 9 ( 1379 1f2v_A) ( 5234 1q7r_A) 0.3722 0.3318 4.5289 ( 1 9 15) 0 0.6220 0.5613 16 18 ( 1379 1f2v_A) ( 5289 1qcz_A) 0.5588 0.8646 4.3025 ( 1 14 36) 0 0.5624 0.8985 16 10 ( 1379 1f2v_A) ( 5297 1qdl_B) 0.3125 0.2941 4.4465 ( 0 2 10) 0 0.6843 0.6447 16 17 ( 1379 1f2v_A) ( 5364 1qkk_A) 0.6204 0.9560 7.3498 ( 1 16 45) 0 0.6204 0.9560 16 10 ( 1379 1f2v_A) ( 5397 1qo0_D) 0.3125 0.4167 3.7731 ( 0 2 10) 0 0.5623 0.7493 16 12 ( 1379 1f2v_A) ( 5470 1qvz_A) 0.3125 0.3125 4.2409 ( 0 5 10) 0 0.6870 0.6870 16 16 ( 1379 1f2v_A) ( 5673 1rli_A) 0.6247 0.8322 5.2081 ( 0 18 45) 0 0.6247 0.8322 16 12 ( 1379 1f2v_A) ( 5752 1s2d_A) 0.4018 0.4295 5.3834 ( 3 13 36) 0 0.4531 0.7772 16 9 ( 1379 1f2v_A) ( 5785 1say_A) 0.3750 0.3158 6.1762 ( 0 6 15) 0 0.5412 0.4846 16 19 ( 1379 1f2v_A) ( 5842 1sqs_A) 0.5859 0.6452 5.5074 ( 2 17 45) 0 0.6236 0.7115 16 14 ( 1379 1f2v_A) ( 5920 1tmy ) 0.6221 0.9713 3.9760 ( 1 17 45) 0 0.6221 0.9713 16 10 ( 1379 1f2v_A) ( 6242 1vhq_A) 0.3125 0.3571 4.2355 ( 0 4 10) 0 0.6859 0.7826 16 14 ( 1379 1f2v_A) ( 6258 1vi6_A) 0.5514 0.6628 4.4460 ( 2 21 36) 0 0.5702 0.6921 16 13 ( 1379 1f2v_A) ( 6283 1vjg_A) 0.3125 0.4166 5.2116 ( 0 6 10) 0 0.4530 0.5831 16 12 ( 1379 1f2v_A) ( 6496 2nac_A) 0.3125 0.3846 4.7045 ( 0 2 10) 0 0.6245 0.7678 16 13 ( 1379 1f2v_A) ( 6624 5nul ) 0.4979 0.5527 5.8341 ( 3 17 45) 0 0.6118 0.8911 16 10 ( 1379 1f2v_A) ( 6640 7req_A) 0.6230 0.8250 4.7996 ( 1 19 45) 0 0.6230 0.8250 16 12 ( 1379 1f2v_A) ( 6642 7req_B) 0.4375 0.5384 3.8908 ( 0 5 21) 0 0.5603 0.6861 16 13 -------------------------------------------------------------------------------------------------------------------------