------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1443 1f8y_A) ( 6 1a04_A) 0.5849 0.5849 4.4265 ( 1 8 21) 0 0.6363 0.6363 11 11 ( 1443 1f8y_A) ( 26 1a2o_A) 0.4545 0.4999 5.8831 ( 0 4 10) 0 0.6242 0.6809 11 10 ( 1443 1f8y_A) ( 90 1a9x_B) 0.7203 0.4438 6.0477 ( 1 17 28) 0 0.7203 0.4717 11 18 ( 1443 1f8y_A) ( 256 1b00_A) 0.7141 0.7792 5.2161 ( 1 14 28) 0 0.7141 0.7792 11 10 ( 1443 1f8y_A) ( 266 1b1c_A) 0.4348 0.4348 6.5885 ( 2 9 28) 0 0.6832 0.6832 11 11 ( 1443 1f8y_A) ( 428 1bmt_A) 0.5587 0.5587 3.9818 ( 1 7 21) 0 0.7142 0.7142 11 11 ( 1443 1f8y_A) ( 477 1bvy_F) 0.6651 0.7514 5.0989 ( 1 9 28) 0 0.6651 0.7772 11 9 ( 1443 1f8y_A) ( 523 1c4k_A) 0.6126 0.7796 3.0133 ( 1 10 21) 0 0.6126 0.7796 11 8 ( 1443 1f8y_A) ( 562 1ccw_A) 0.4545 0.5000 3.5081 ( 0 5 10) 0 0.6362 0.6997 11 10 ( 1443 1f8y_A) ( 745 1d4a_A) 0.7042 0.5282 5.0031 ( 1 12 28) 0 0.7042 0.5282 11 15 ( 1443 1f8y_A) ( 786 1dbw_A) 0.3945 0.3962 5.1471 ( 3 12 36) 0 0.7166 0.7546 11 10 ( 1443 1f8y_A) ( 793 1dcf_A) 0.4544 0.4998 6.6695 ( 0 2 10) 0 0.6125 0.6631 11 10 ( 1443 1f8y_A) ( 971 1dxy ) 0.7101 0.8451 4.8249 ( 1 13 28) 0 0.7101 0.8451 11 9 ( 1443 1f8y_A) ( 980 1dz3_A) 0.4544 0.4998 6.3597 ( 0 4 10) 0 0.7248 0.7961 11 10 ( 1443 1f8y_A) ( 1042 1e5d_A) 0.6831 0.7333 5.8251 ( 1 10 28) 0 0.7038 0.7635 11 10 ( 1443 1f8y_A) ( 1177 1eiw_A) 0.6126 0.7194 2.4433 ( 1 10 21) 0 0.6126 0.7194 11 9 ( 1443 1f8y_A) ( 1252 1es9_A) 0.4545 0.4167 3.5894 ( 0 6 10) 0 0.8087 0.7438 11 12 ( 1443 1f8y_A) ( 1253 1esc ) 0.5449 0.3529 7.4427 ( 0 8 15) 0 0.6823 0.4648 11 17 ( 1443 1f8y_A) ( 1266 1euc_B) 0.4544 0.4166 6.1963 ( 0 6 10) 0 0.7250 0.6652 11 12 ( 1443 1f8y_A) ( 1379 1f2v_A) 0.5250 0.4676 4.6613 ( 2 11 36) 0 0.7192 0.4987 11 16 ( 1443 1f8y_A) ( 1397 1f4p_A) 0.6362 0.7773 4.5753 ( 0 6 21) 0 0.6833 0.7864 11 9 ( 1443 1f8y_A) ( 1443 1f8y_A) 1.0000 1.0000 0.0000 ( 0 43 55) 0 1.0000 1.0000 11 11 ( 1443 1f8y_A) ( 1516 1fjg_B) 0.5849 0.5481 3.4390 ( 1 8 21) 0 0.6360 0.5831 11 12 ( 1443 1f8y_A) ( 1547 1flc_A) 0.4375 0.3186 4.5903 ( 1 5 15) 0 0.6362 0.3889 11 18 ( 1443 1f8y_A) ( 1659 1fye_A) 0.4545 0.2778 5.3107 ( 0 5 10) 0 0.7196 0.4667 11 18 ( 1443 1f8y_A) ( 1662 1fyx_A) 0.4233 0.4531 3.9069 ( 1 6 10) 0 0.6384 0.6893 11 10 ( 1443 1f8y_A) ( 1700 1g2i_A) 0.7142 0.5674 4.9903 ( 1 14 28) 0 0.7142 0.5674 11 14 ( 1443 1f8y_A) ( 1803 1gdh_A) 0.5453 0.5997 5.5667 ( 0 5 15) 0 0.6351 0.6979 11 10 ( 1443 1f8y_A) ( 1901 1gpm_A) 0.6470 0.5221 5.7042 ( 3 22 36) 0 0.6532 0.5221 11 16 ( 1443 1f8y_A) ( 2027 1h05_A) 0.7269 0.7269 4.7411 ( 0 8 28) 0 0.7269 0.7269 11 11 ( 1443 1f8y_A) ( 2427 1i7q_B) 0.6649 0.4380 5.7882 ( 2 18 28) 0 0.6649 0.4389 11 18 ( 1443 1f8y_A) ( 2470 1iex_A) 0.5454 0.5000 4.2206 ( 0 6 15) 0 0.5454 0.5000 11 12 ( 1443 1f8y_A) ( 2714 1j2y_A) 0.5741 0.5741 6.6855 ( 2 13 28) 0 0.6358 0.6358 11 11 ( 1443 1f8y_A) ( 2729 1j4a_A) 0.7142 0.7794 4.7819 ( 1 14 28) 0 0.7142 0.7794 11 10 ( 1443 1f8y_A) ( 2809 1jbe_A) 0.4542 0.4995 8.0177 ( 0 5 10) 0 0.4545 0.4999 11 10 ( 1443 1f8y_A) ( 3034 1jrl_A) 0.3636 0.4000 5.2604 ( 0 1 6) 0 0.6361 0.6996 11 10 ( 1443 1f8y_A) ( 3073 1jvn_A) 0.3636 0.2105 5.6371 ( 0 2 6) 0 0.6362 0.3684 11 19 ( 1443 1f8y_A) ( 3189 1k66_A) 0.5995 0.5995 3.7777 ( 1 7 28) 0 0.7861 0.7861 11 11 ( 1443 1f8y_A) ( 3190 1k68_A) 0.5995 0.6237 3.6335 ( 1 7 28) 0 0.7966 0.8663 11 10 ( 1443 1f8y_A) ( 3199 1k7c_A) 0.4540 0.3332 9.1491 ( 0 3 10) 0 0.6188 0.4627 11 15 ( 1443 1f8y_A) ( 3234 1k9v_F) 0.6243 0.3878 3.8547 ( 1 12 21) 0 0.6275 0.4101 11 18 ( 1443 1f8y_A) ( 3238 1ka9_H) 0.5407 0.4175 3.9636 ( 2 13 21) 0 0.6752 0.4908 11 16 ( 1443 1f8y_A) ( 3295 1kgs_A) 0.5187 0.5386 4.3949 ( 1 6 21) 0 0.7260 0.7980 11 10 ( 1443 1f8y_A) ( 3412 1krw_A) 0.4545 0.4999 5.4363 ( 0 4 10) 0 0.7938 0.8620 11 10 ( 1443 1f8y_A) ( 3462 1kwg_A) 0.5995 0.4719 3.7907 ( 1 7 28) 0 0.5995 0.4719 11 16 ( 1443 1f8y_A) ( 3560 1l7d_A) 0.5742 0.4428 6.3243 ( 2 13 28) 0 0.7256 0.5111 11 17 ( 1443 1f8y_A) ( 3581 1l9x_A) 0.6751 0.3463 5.3938 ( 2 19 28) 0 0.7208 0.3837 11 23 ( 1443 1f8y_A) ( 3632 1li4_A) 0.4543 0.2778 7.4714 ( 0 5 10) 0 0.6360 0.4279 11 18 ( 1443 1f8y_A) ( 3801 1m2e_A) 0.5043 0.5737 3.0070 ( 1 7 15) 0 0.5454 0.6665 11 9 ( 1443 1f8y_A) ( 3896 1mb3_A) 0.5849 0.6236 4.3250 ( 1 8 21) 0 0.5849 0.6236 11 10 ( 1443 1f8y_A) ( 4066 1mx3_A) 0.5123 0.5123 5.7744 ( 2 11 28) 0 0.6358 0.6358 11 11 ( 1443 1f8y_A) ( 4130 1n57_A) 0.5455 0.4161 4.3517 ( 2 12 28) 0 0.8082 0.4991 11 18 ( 1443 1f8y_A) ( 4185 1nat ) 0.3636 0.4000 3.4520 ( 0 1 6) 0 0.6363 0.6999 11 10 ( 1443 1f8y_A) ( 4323 1nni_1) 0.5442 0.5442 9.0577 ( 0 3 15) 0 0.6361 0.6361 11 11 ( 1443 1f8y_A) ( 4433 1ny5_A) 0.3636 0.4000 3.7881 ( 0 3 6) 0 0.7269 0.7994 11 10 ( 1443 1f8y_A) ( 4474 1o1y_A) 0.3636 0.2105 5.4954 ( 0 4 6) 0 0.6652 0.4161 11 19 ( 1443 1f8y_A) ( 4590 1obo_A) 0.3709 0.3722 6.2866 ( 4 15 36) 0 0.6957 0.7515 11 10 ( 1443 1f8y_A) ( 4669 1oi7_A) 0.4543 0.4543 7.7457 ( 0 2 10) 0 0.5454 0.5454 11 11 ( 1443 1f8y_A) ( 4787 1ou0_A) 0.3417 0.2325 10.5959 ( 1 5 6) 0 0.8255 0.5767 11 17 ( 1443 1f8y_A) ( 4813 1oxb_B) 0.3857 0.3900 4.3661 ( 2 8 21) 0 0.6014 0.6469 11 10 ( 1443 1f8y_A) ( 4871 1p2f_A) 0.4545 0.5000 4.1891 ( 0 2 10) 0 0.6651 0.7081 11 10 ( 1443 1f8y_A) ( 4905 1p5f_A) 0.5193 0.4201 5.2444 ( 1 8 15) 0 0.7004 0.5988 11 14 ( 1443 1f8y_A) ( 4916 1p6u_A) 0.3636 0.4000 3.5782 ( 0 1 6) 0 0.6834 0.7337 11 10 ( 1443 1f8y_A) ( 4926 1p80_A) 0.5587 0.4995 4.0439 ( 1 7 21) 0 0.7207 0.6125 11 13 ( 1443 1f8y_A) ( 5096 1psd_A) 0.4545 0.5553 5.9424 ( 0 2 10) 0 0.6353 0.7748 11 9 ( 1443 1f8y_A) ( 5234 1q7r_A) 0.7193 0.4437 4.9658 ( 1 16 28) 0 0.7271 0.4444 11 18 ( 1443 1f8y_A) ( 5289 1qcz_A) 0.5186 0.5385 4.6721 ( 1 6 21) 0 0.7270 0.7996 11 10 ( 1443 1f8y_A) ( 5297 1qdl_B) 0.7189 0.4696 5.7711 ( 1 16 28) 0 0.7189 0.4868 11 17 ( 1443 1f8y_A) ( 5364 1qkk_A) 0.3636 0.4000 3.7862 ( 0 1 6) 0 0.6369 0.6977 11 10 ( 1443 1f8y_A) ( 5397 1qo0_D) 0.4543 0.4165 7.8852 ( 0 4 10) 0 0.5454 0.5000 11 12 ( 1443 1f8y_A) ( 5470 1qvz_A) 0.5994 0.4718 5.0032 ( 2 14 28) 0 0.5994 0.4718 11 16 ( 1443 1f8y_A) ( 5673 1rli_A) 0.7101 0.6554 4.7837 ( 1 13 28) 0 0.7101 0.6554 11 12 ( 1443 1f8y_A) ( 5752 1s2d_A) 0.6265 0.7521 7.2574 ( 1 13 21) 0 0.6948 0.8105 11 9 ( 1443 1f8y_A) ( 5785 1say_A) 0.7041 0.4194 5.2099 ( 1 12 28) 0 0.8117 0.5182 11 19 ( 1443 1f8y_A) ( 5842 1sqs_A) 0.6957 0.5613 5.2441 ( 1 11 28) 0 0.6957 0.5768 11 14 ( 1443 1f8y_A) ( 5920 1tmy ) 0.3913 0.3940 4.3637 ( 3 12 28) 0 0.4789 0.5045 11 10 ( 1443 1f8y_A) ( 6242 1vhq_A) 0.7142 0.5674 4.9017 ( 1 14 28) 0 0.7142 0.5674 11 14 ( 1443 1f8y_A) ( 6258 1vi6_A) 0.4545 0.3846 4.9738 ( 0 5 10) 0 0.6018 0.5309 11 13 ( 1443 1f8y_A) ( 6283 1vjg_A) 0.4545 0.4166 5.7862 ( 0 3 10) 0 0.5744 0.5532 11 12 ( 1443 1f8y_A) ( 6496 2nac_A) 0.4545 0.3846 3.6819 ( 0 3 10) 0 0.6361 0.5384 11 13 ( 1443 1f8y_A) ( 6624 5nul ) 0.7042 0.7640 5.1630 ( 1 12 28) 0 0.7260 0.7979 11 10 ( 1443 1f8y_A) ( 6640 7req_A) 0.5281 0.4885 6.9678 ( 1 9 15) 0 0.6355 0.5828 11 12 ( 1443 1f8y_A) ( 6642 7req_B) 0.7145 0.6097 3.4325 ( 1 14 28) 0 0.7184 0.6115 11 13 -------------------------------------------------------------------------------------------------------------------------