------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1516 1fjg_B) ( 6 1a04_A) 0.3333 0.3636 3.5031 ( 0 2 6) 0 0.6512 0.7039 12 11 ( 1516 1fjg_B) ( 26 1a2o_A) 0.3333 0.3998 8.4622 ( 0 4 6) 0 0.4716 0.5381 12 10 ( 1516 1fjg_B) ( 90 1a9x_B) 0.3333 0.2222 3.8115 ( 0 1 6) 0 0.5285 0.3936 12 18 ( 1516 1fjg_B) ( 256 1b00_A) 0.3805 0.3900 5.0388 ( 1 4 21) 0 0.4999 0.5996 12 10 ( 1516 1fjg_B) ( 266 1b1c_A) 0.3333 0.3636 3.8493 ( 0 1 6) 0 0.6662 0.7266 12 11 ( 1516 1fjg_B) ( 428 1bmt_A) 0.3333 0.3636 3.6048 ( 0 2 6) 0 0.4743 0.4909 12 11 ( 1516 1fjg_B) ( 477 1bvy_F) 0.3333 0.4444 3.7073 ( 0 2 6) 0 0.4999 0.6665 12 9 ( 1516 1fjg_B) ( 523 1c4k_A) 0.4999 0.7494 5.1595 ( 0 1 15) 0 0.4999 0.7494 12 8 ( 1516 1fjg_B) ( 562 1ccw_A) 0.3333 0.4000 5.3056 ( 0 0 6) 0 0.5596 0.6464 12 10 ( 1516 1fjg_B) ( 745 1d4a_A) 0.4162 0.3332 9.8066 ( 0 3 10) 0 0.5719 0.4628 12 15 ( 1516 1fjg_B) ( 786 1dbw_A) 0.4488 0.4719 4.7849 ( 1 5 21) 0 0.5672 0.6626 12 10 ( 1516 1fjg_B) ( 793 1dcf_A) 0.3333 0.3998 8.3420 ( 0 0 6) 0 0.5820 0.6966 12 10 ( 1516 1fjg_B) ( 971 1dxy ) 0.5000 0.6666 3.6171 ( 0 4 15) 0 0.5000 0.6666 12 9 ( 1516 1fjg_B) ( 980 1dz3_A) 0.3671 0.3824 3.1882 ( 1 4 15) 0 0.4971 0.5384 12 10 ( 1516 1fjg_B) ( 1042 1e5d_A) 0.5832 0.6996 5.0764 ( 0 4 21) 0 0.5832 0.6996 12 10 ( 1516 1fjg_B) ( 1177 1eiw_A) 0.5832 0.7773 4.5834 ( 0 6 21) 0 0.5832 0.7773 12 9 ( 1516 1fjg_B) ( 1252 1es9_A) 0.4166 0.4166 4.8774 ( 0 0 10) 0 0.6575 0.6575 12 12 ( 1516 1fjg_B) ( 1253 1esc ) 0.4166 0.2941 6.3034 ( 0 0 10) 0 0.4170 0.3605 12 17 ( 1516 1fjg_B) ( 1266 1euc_B) 0.4488 0.4488 4.5287 ( 1 5 21) 0 0.4996 0.4996 12 12 ( 1516 1fjg_B) ( 1379 1f2v_A) 0.6602 0.4984 3.7322 ( 1 15 28) 0 0.6602 0.4984 12 16 ( 1516 1fjg_B) ( 1397 1f4p_A) 0.5832 0.7773 4.4606 ( 0 4 21) 0 0.5832 0.7773 12 9 ( 1516 1fjg_B) ( 1443 1f8y_A) 0.5481 0.5849 3.4390 ( 1 8 21) 0 0.5831 0.6360 12 11 ( 1516 1fjg_B) ( 1516 1fjg_B) 1.0000 1.0000 0.0000 ( 0 49 66) 0 1.0000 1.0000 12 12 ( 1516 1fjg_B) ( 1547 1flc_A) 0.4167 0.2778 3.5576 ( 0 2 10) 0 0.4167 0.2778 12 18 ( 1516 1fjg_B) ( 1659 1fye_A) 0.3333 0.2222 4.7990 ( 0 0 6) 0 0.5736 0.4280 12 18 ( 1516 1fjg_B) ( 1662 1fyx_A) 0.3671 0.3824 4.2515 ( 1 4 15) 0 0.5833 0.7000 12 10 ( 1516 1fjg_B) ( 1700 1g2i_A) 0.3430 0.3158 6.8830 ( 1 4 10) 0 0.6665 0.5714 12 14 ( 1516 1fjg_B) ( 1803 1gdh_A) 0.3333 0.4000 3.0453 ( 0 0 6) 0 0.5829 0.6990 12 10 ( 1516 1fjg_B) ( 1901 1gpm_A) 0.3333 0.2500 3.8074 ( 0 0 6) 0 0.6514 0.4962 12 16 ( 1516 1fjg_B) ( 2027 1h05_A) 0.5833 0.6363 3.8382 ( 0 3 21) 0 0.5833 0.6363 12 11 ( 1516 1fjg_B) ( 2427 1i7q_B) 0.3776 0.2715 5.7792 ( 1 5 10) 0 0.5674 0.3867 12 18 ( 1516 1fjg_B) ( 2470 1iex_A) 0.4488 0.4488 4.2456 ( 1 5 21) 0 0.4998 0.4998 12 12 ( 1516 1fjg_B) ( 2714 1j2y_A) 0.4166 0.4545 5.4838 ( 0 4 10) 0 0.5829 0.6356 12 11 ( 1516 1fjg_B) ( 2729 1j4a_A) 0.5000 0.6000 3.2359 ( 0 4 15) 0 0.5000 0.6000 12 10 ( 1516 1fjg_B) ( 2809 1jbe_A) 0.4972 0.5385 4.8983 ( 1 6 21) 0 0.4972 0.5385 12 10 ( 1516 1fjg_B) ( 3034 1jrl_A) 0.3333 0.4000 4.8473 ( 0 1 6) 0 0.4488 0.4999 12 10 ( 1516 1fjg_B) ( 3073 1jvn_A) 0.3333 0.2105 5.7540 ( 0 0 6) 0 0.5478 0.3911 12 19 ( 1516 1fjg_B) ( 3189 1k66_A) 0.4488 0.4612 3.4103 ( 1 5 21) 0 0.4995 0.5447 12 11 ( 1516 1fjg_B) ( 3190 1k68_A) 0.4488 0.4719 3.1251 ( 1 5 21) 0 0.5824 0.6977 12 10 ( 1516 1fjg_B) ( 3199 1k7c_A) 0.3333 0.2667 7.2781 ( 0 3 6) 0 0.6486 0.5272 12 15 ( 1516 1fjg_B) ( 3234 1k9v_F) 0.3333 0.2222 5.4928 ( 0 0 6) 0 0.4999 0.3678 12 18 ( 1516 1fjg_B) ( 3238 1ka9_H) 0.3333 0.2500 3.6367 ( 0 2 6) 0 0.5723 0.4348 12 16 ( 1516 1fjg_B) ( 3295 1kgs_A) 0.3333 0.4000 3.0744 ( 0 0 6) 0 0.6576 0.7783 12 10 ( 1516 1fjg_B) ( 3412 1krw_A) 0.4488 0.4719 3.6295 ( 1 5 21) 0 0.4488 0.4719 12 10 ( 1516 1fjg_B) ( 3462 1kwg_A) 0.3430 0.2887 6.1451 ( 1 4 10) 0 0.5831 0.4375 12 16 ( 1516 1fjg_B) ( 3560 1l7d_A) 0.4170 0.3605 6.9816 ( 2 9 21) 0 0.5284 0.4002 12 17 ( 1516 1fjg_B) ( 3581 1l9x_A) 0.3332 0.1739 9.1852 ( 0 3 6) 0 0.5666 0.3189 12 23 ( 1516 1fjg_B) ( 3632 1li4_A) 0.4166 0.2778 4.9845 ( 0 2 10) 0 0.6862 0.4900 12 18 ( 1516 1fjg_B) ( 3801 1m2e_A) 0.4204 0.4668 3.2299 ( 1 5 15) 0 0.4997 0.6654 12 9 ( 1516 1fjg_B) ( 3896 1mb3_A) 0.3805 0.3900 4.1518 ( 1 4 21) 0 0.4488 0.4992 12 10 ( 1516 1fjg_B) ( 4066 1mx3_A) 0.3333 0.3636 3.5569 ( 0 0 6) 0 0.5831 0.6360 12 11 ( 1516 1fjg_B) ( 4130 1n57_A) 0.5833 0.3889 4.0153 ( 0 5 21) 0 0.8043 0.5515 12 18 ( 1516 1fjg_B) ( 4185 1nat ) 0.3805 0.3900 3.7199 ( 1 4 21) 0 0.4166 0.4999 12 10 ( 1516 1fjg_B) ( 4323 1nni_1) 0.3333 0.3636 3.5728 ( 0 2 6) 0 0.5832 0.6362 12 11 ( 1516 1fjg_B) ( 4433 1ny5_A) 0.3333 0.4000 3.8892 ( 0 2 6) 0 0.5000 0.6000 12 10 ( 1516 1fjg_B) ( 4474 1o1y_A) 0.3333 0.2105 5.4696 ( 0 0 6) 0 0.6661 0.4210 12 19 ( 1516 1fjg_B) ( 4590 1obo_A) 0.3333 0.4000 4.0600 ( 0 3 6) 0 0.5000 0.5999 12 10 ( 1516 1fjg_B) ( 4669 1oi7_A) 0.3332 0.3634 9.8241 ( 0 3 6) 0 0.3333 0.3636 12 11 ( 1516 1fjg_B) ( 4787 1ou0_A) 0.6583 0.4691 3.5735 ( 1 14 28) 0 0.7421 0.5280 12 17 ( 1516 1fjg_B) ( 4813 1oxb_B) 0.5733 0.6230 6.7427 ( 1 7 28) 0 0.5733 0.6230 12 10 ( 1516 1fjg_B) ( 4871 1p2f_A) 0.3805 0.3900 4.1910 ( 1 4 21) 0 0.4772 0.4996 12 10 ( 1516 1fjg_B) ( 4905 1p5f_A) 0.5833 0.5000 3.5395 ( 0 5 21) 0 0.6238 0.5501 12 14 ( 1516 1fjg_B) ( 4916 1p6u_A) 0.3333 0.4000 2.6052 ( 0 2 6) 0 0.4718 0.5385 12 10 ( 1516 1fjg_B) ( 4926 1p80_A) 0.5832 0.5384 4.4719 ( 0 5 21) 0 0.5899 0.5600 12 13 ( 1516 1fjg_B) ( 5096 1psd_A) 0.3333 0.4444 3.1378 ( 0 0 6) 0 0.5831 0.7766 12 9 ( 1516 1fjg_B) ( 5234 1q7r_A) 0.3333 0.2222 3.6751 ( 0 1 6) 0 0.5674 0.3867 12 18 ( 1516 1fjg_B) ( 5289 1qcz_A) 0.3333 0.4000 2.6745 ( 0 0 6) 0 0.5832 0.6997 12 10 ( 1516 1fjg_B) ( 5297 1qdl_B) 0.3333 0.2353 3.6894 ( 0 0 6) 0 0.5831 0.4117 12 17 ( 1516 1fjg_B) ( 5364 1qkk_A) 0.4165 0.4995 8.0641 ( 0 1 10) 0 0.4170 0.4995 12 10 ( 1516 1fjg_B) ( 5397 1qo0_D) 0.3333 0.3333 6.2246 ( 0 2 6) 0 0.5815 0.5815 12 12 ( 1516 1fjg_B) ( 5470 1qvz_A) 0.5833 0.4375 3.8696 ( 0 5 21) 0 0.6601 0.4984 12 16 ( 1516 1fjg_B) ( 5673 1rli_A) 0.4488 0.4488 5.0289 ( 1 5 21) 0 0.5720 0.5720 12 12 ( 1516 1fjg_B) ( 5752 1s2d_A) 0.5000 0.6666 3.8151 ( 0 4 15) 0 0.5833 0.7775 12 9 ( 1516 1fjg_B) ( 5785 1say_A) 0.4165 0.2631 8.0079 ( 0 5 10) 0 0.5673 0.3667 12 19 ( 1516 1fjg_B) ( 5842 1sqs_A) 0.5832 0.4999 4.7624 ( 0 4 21) 0 0.6551 0.5660 12 14 ( 1516 1fjg_B) ( 5920 1tmy ) 0.4488 0.4719 4.2849 ( 1 5 21) 0 0.5709 0.6708 12 10 ( 1516 1fjg_B) ( 6242 1vhq_A) 0.5833 0.5000 3.6850 ( 0 5 21) 0 0.5833 0.5000 12 14 ( 1516 1fjg_B) ( 6258 1vi6_A) 0.7500 0.6923 2.0849 ( 0 22 36) 0 0.7500 0.6923 12 13 ( 1516 1fjg_B) ( 6283 1vjg_A) 0.3333 0.3333 5.2946 ( 0 3 6) 0 0.5830 0.5830 12 12 ( 1516 1fjg_B) ( 6496 2nac_A) 0.3333 0.3077 2.9476 ( 0 0 6) 0 0.4488 0.4351 12 13 ( 1516 1fjg_B) ( 6624 5nul ) 0.5832 0.6997 4.6070 ( 0 4 21) 0 0.5832 0.6997 12 10 ( 1516 1fjg_B) ( 6640 7req_A) 0.4163 0.4163 9.2512 ( 0 5 10) 0 0.5672 0.5672 12 12 ( 1516 1fjg_B) ( 6642 7req_B) 0.4824 0.4495 6.1350 ( 1 8 15) 0 0.4998 0.4614 12 13 -------------------------------------------------------------------------------------------------------------------------