------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1659 1fye_A) ( 6 1a04_A) 0.4433 0.7140 5.3150 ( 1 14 28) 0 0.4988 0.8044 18 11 ( 1659 1fye_A) ( 26 1a2o_A) 0.2778 0.5000 2.7207 ( 0 5 10) 0 0.5000 0.8994 18 10 ( 1659 1fye_A) ( 90 1a9x_B) 0.4444 0.4444 4.3781 ( 0 17 28) 0 0.7119 0.7119 18 18 ( 1659 1fye_A) ( 256 1b00_A) 0.3333 0.5994 6.6843 ( 0 8 15) 0 0.4995 0.8905 18 10 ( 1659 1fye_A) ( 266 1b1c_A) 0.3333 0.5454 4.2031 ( 0 6 15) 0 0.4990 0.8068 18 11 ( 1659 1fye_A) ( 428 1bmt_A) 0.2778 0.4545 3.6844 ( 0 5 10) 0 0.5343 0.8094 18 11 ( 1659 1fye_A) ( 477 1bvy_F) 0.2778 0.5553 5.6788 ( 0 4 10) 0 0.4994 0.9812 18 9 ( 1659 1fye_A) ( 523 1c4k_A) 0.3333 0.7490 5.7631 ( 0 8 15) 0 0.4415 0.8772 18 8 ( 1659 1fye_A) ( 562 1ccw_A) 0.3333 0.5997 5.7339 ( 0 7 15) 0 0.4415 0.7515 18 10 ( 1659 1fye_A) ( 745 1d4a_A) 0.2778 0.3333 4.1552 ( 0 6 10) 0 0.4983 0.5959 18 15 ( 1659 1fye_A) ( 786 1dbw_A) 0.3888 0.6990 6.3544 ( 0 13 21) 0 0.5548 0.9857 18 10 ( 1659 1fye_A) ( 793 1dcf_A) 0.3936 0.4824 5.8936 ( 2 10 28) 0 0.4990 0.8814 18 10 ( 1659 1fye_A) ( 971 1dxy ) 0.3867 0.7187 5.5821 ( 1 10 21) 0 0.4444 0.8876 18 9 ( 1659 1fye_A) ( 980 1dz3_A) 0.3333 0.5999 3.9536 ( 0 8 15) 0 0.4444 0.7996 18 10 ( 1659 1fye_A) ( 1042 1e5d_A) 0.2778 0.4999 4.5671 ( 0 6 10) 0 0.4779 0.7984 18 10 ( 1659 1fye_A) ( 1177 1eiw_A) 0.3333 0.6666 3.8626 ( 0 8 15) 0 0.4444 0.8884 18 9 ( 1659 1fye_A) ( 1252 1es9_A) 0.2778 0.4166 4.3679 ( 0 5 10) 0 0.5493 0.7903 18 12 ( 1659 1fye_A) ( 1253 1esc ) 0.2778 0.2941 3.6322 ( 0 8 10) 0 0.4998 0.5291 18 17 ( 1659 1fye_A) ( 1266 1euc_B) 0.3333 0.5000 4.3073 ( 0 7 15) 0 0.5546 0.8264 18 12 ( 1659 1fye_A) ( 1379 1f2v_A) 0.2778 0.3125 7.8465 ( 0 4 10) 0 0.5614 0.6221 18 16 ( 1659 1fye_A) ( 1397 1f4p_A) 0.3333 0.6666 3.8638 ( 0 5 15) 0 0.4444 0.8877 18 9 ( 1659 1fye_A) ( 1443 1f8y_A) 0.2747 0.4233 5.1176 ( 1 6 10) 0 0.4667 0.7196 18 11 ( 1659 1fye_A) ( 1516 1fjg_B) 0.2263 0.2319 4.7305 ( 3 7 21) 0 0.4280 0.5736 18 12 ( 1659 1fye_A) ( 1547 1flc_A) 0.2222 0.2222 4.1473 ( 0 3 6) 0 0.4972 0.4972 18 18 ( 1659 1fye_A) ( 1659 1fye_A) 1.0000 1.0000 0.0000 ( 0 120 153) 0 1.0000 1.0000 18 18 ( 1659 1fye_A) ( 1662 1fyx_A) 0.3801 0.5886 3.1137 ( 2 14 21) 0 0.4390 0.5997 18 10 ( 1659 1fye_A) ( 1700 1g2i_A) 0.3326 0.4261 4.5060 ( 1 11 15) 0 0.5952 0.7352 18 14 ( 1659 1fye_A) ( 1803 1gdh_A) 0.3333 0.5993 6.9788 ( 0 5 15) 0 0.4977 0.8609 18 10 ( 1659 1fye_A) ( 1901 1gpm_A) 0.2747 0.3070 4.9231 ( 1 6 10) 0 0.7440 0.8177 18 16 ( 1659 1fye_A) ( 2027 1h05_A) 0.4444 0.7266 5.3893 ( 0 9 28) 0 0.5326 0.7785 18 11 ( 1659 1fye_A) ( 2427 1i7q_B) 0.2778 0.2778 4.2506 ( 0 6 10) 0 0.5637 0.5637 18 18 ( 1659 1fye_A) ( 2470 1iex_A) 0.2778 0.4167 4.0237 ( 0 5 10) 0 0.5546 0.8265 18 12 ( 1659 1fye_A) ( 2714 1j2y_A) 0.4444 0.7265 5.5565 ( 0 10 28) 0 0.4978 0.7938 18 11 ( 1659 1fye_A) ( 2729 1j4a_A) 0.2778 0.5000 3.2606 ( 0 5 10) 0 0.4989 0.8806 18 10 ( 1659 1fye_A) ( 2809 1jbe_A) 0.3333 0.5999 4.3316 ( 0 9 15) 0 0.4719 0.7995 18 10 ( 1659 1fye_A) ( 3034 1jrl_A) 0.2778 0.5000 4.1859 ( 0 2 10) 0 0.4401 0.7328 18 10 ( 1659 1fye_A) ( 3073 1jvn_A) 0.2926 0.2830 5.9920 ( 3 11 15) 0 0.7710 0.7316 18 19 ( 1659 1fye_A) ( 3189 1k66_A) 0.2778 0.4545 4.6396 ( 0 2 10) 0 0.5493 0.8459 18 11 ( 1659 1fye_A) ( 3190 1k68_A) 0.2778 0.5000 4.4558 ( 0 4 10) 0 0.4999 0.8982 18 10 ( 1659 1fye_A) ( 3199 1k7c_A) 0.3889 0.4666 4.9651 ( 0 10 21) 0 0.4822 0.5595 18 15 ( 1659 1fye_A) ( 3234 1k9v_F) 0.2777 0.2777 9.2260 ( 0 4 10) 0 0.7545 0.7545 18 18 ( 1659 1fye_A) ( 3238 1ka9_H) 0.2222 0.2500 6.4924 ( 0 0 6) 0 0.7153 0.8003 18 16 ( 1659 1fye_A) ( 3295 1kgs_A) 0.4415 0.7515 5.2496 ( 1 11 28) 0 0.4999 0.8985 18 10 ( 1659 1fye_A) ( 3412 1krw_A) 0.3333 0.6000 3.5392 ( 0 7 15) 0 0.4984 0.8720 18 10 ( 1659 1fye_A) ( 3462 1kwg_A) 0.4444 0.4998 6.1197 ( 0 14 28) 0 0.4832 0.4998 18 16 ( 1659 1fye_A) ( 3560 1l7d_A) 0.2778 0.2941 5.1701 ( 0 7 10) 0 0.5553 0.5879 18 17 ( 1659 1fye_A) ( 3581 1l9x_A) 0.2778 0.2174 4.7761 ( 0 6 10) 0 0.7218 0.5903 18 23 ( 1659 1fye_A) ( 3632 1li4_A) 0.3333 0.3333 4.6716 ( 0 7 15) 0 0.6568 0.6568 18 18 ( 1659 1fye_A) ( 3801 1m2e_A) 0.3333 0.6666 3.3029 ( 0 8 15) 0 0.4987 0.9632 18 9 ( 1659 1fye_A) ( 3896 1mb3_A) 0.4433 0.7792 5.1265 ( 1 14 28) 0 0.5468 0.8771 18 10 ( 1659 1fye_A) ( 4066 1mx3_A) 0.3889 0.6361 4.9933 ( 0 12 21) 0 0.4999 0.8174 18 11 ( 1659 1fye_A) ( 4130 1n57_A) 0.3318 0.3318 4.4968 ( 1 9 15) 0 0.6107 0.6107 18 18 ( 1659 1fye_A) ( 4185 1nat ) 0.2778 0.5000 2.6792 ( 0 3 10) 0 0.5000 0.8992 18 10 ( 1659 1fye_A) ( 4323 1nni_1) 0.3333 0.5453 5.0701 ( 0 9 15) 0 0.5310 0.8101 18 11 ( 1659 1fye_A) ( 4433 1ny5_A) 0.2778 0.5000 3.0301 ( 0 3 10) 0 0.4998 0.8971 18 10 ( 1659 1fye_A) ( 4474 1o1y_A) 0.4444 0.4210 4.3119 ( 0 19 28) 0 0.5129 0.5026 18 19 ( 1659 1fye_A) ( 4590 1obo_A) 0.3333 0.5998 5.0231 ( 0 7 15) 0 0.4998 0.8963 18 10 ( 1659 1fye_A) ( 4669 1oi7_A) 0.2778 0.4543 7.7295 ( 0 1 10) 0 0.5542 0.8938 18 11 ( 1659 1fye_A) ( 4787 1ou0_A) 0.2420 0.2497 7.5543 ( 2 6 10) 0 0.5543 0.5866 18 17 ( 1659 1fye_A) ( 4813 1oxb_B) 0.3889 0.6993 5.6785 ( 0 8 21) 0 0.4988 0.8783 18 10 ( 1659 1fye_A) ( 4871 1p2f_A) 0.2778 0.5000 2.8320 ( 0 4 10) 0 0.5327 0.8997 18 10 ( 1659 1fye_A) ( 4905 1p5f_A) 0.3323 0.4250 4.5699 ( 1 10 15) 0 0.6983 0.8546 18 14 ( 1659 1fye_A) ( 4916 1p6u_A) 0.2778 0.4995 7.8907 ( 0 1 10) 0 0.5550 0.9891 18 10 ( 1659 1fye_A) ( 4926 1p80_A) 0.2222 0.3077 5.5562 ( 0 2 6) 0 0.5202 0.6385 18 13 ( 1659 1fye_A) ( 5096 1psd_A) 0.2778 0.5550 7.3240 ( 0 2 10) 0 0.4280 0.7773 18 9 ( 1659 1fye_A) ( 5234 1q7r_A) 0.3333 0.3333 4.8742 ( 0 9 15) 0 0.7354 0.7354 18 18 ( 1659 1fye_A) ( 5289 1qcz_A) 0.2778 0.5000 3.9135 ( 0 5 10) 0 0.4999 0.8990 18 10 ( 1659 1fye_A) ( 5297 1qdl_B) 0.4999 0.5293 4.8669 ( 0 21 36) 0 0.6066 0.6411 18 17 ( 1659 1fye_A) ( 5364 1qkk_A) 0.2778 0.5000 2.5081 ( 0 4 10) 0 0.5533 0.9610 18 10 ( 1659 1fye_A) ( 5397 1qo0_D) 0.3331 0.4983 11.0230 ( 0 9 15) 0 0.4975 0.7318 18 12 ( 1659 1fye_A) ( 5470 1qvz_A) 0.3333 0.3750 2.6248 ( 0 10 15) 0 0.6207 0.6833 18 16 ( 1659 1fye_A) ( 5673 1rli_A) 0.3333 0.5000 4.3374 ( 0 4 15) 0 0.5678 0.7837 18 12 ( 1659 1fye_A) ( 5752 1s2d_A) 0.2778 0.5554 4.9231 ( 0 3 10) 0 0.4429 0.8450 18 9 ( 1659 1fye_A) ( 5785 1say_A) 0.2778 0.2632 4.0901 ( 0 5 10) 0 0.5481 0.5206 18 19 ( 1659 1fye_A) ( 5842 1sqs_A) 0.3801 0.4717 6.7492 ( 1 7 21) 0 0.5481 0.6896 18 14 ( 1659 1fye_A) ( 5920 1tmy ) 0.3333 0.5996 6.2059 ( 0 9 15) 0 0.5549 0.9878 18 10 ( 1659 1fye_A) ( 6242 1vhq_A) 0.2778 0.3571 4.6473 ( 0 6 10) 0 0.5501 0.6960 18 14 ( 1659 1fye_A) ( 6258 1vi6_A) 0.2222 0.3077 3.9187 ( 0 3 6) 0 0.4990 0.6874 18 13 ( 1659 1fye_A) ( 6283 1vjg_A) 0.2778 0.4166 4.4647 ( 0 3 10) 0 0.4986 0.7397 18 12 ( 1659 1fye_A) ( 6496 2nac_A) 0.2778 0.3846 4.1051 ( 0 4 10) 0 0.5555 0.7688 18 13 ( 1659 1fye_A) ( 6624 5nul ) 0.2778 0.4998 6.0209 ( 0 6 10) 0 0.5553 0.9945 18 10 ( 1659 1fye_A) ( 6640 7req_A) 0.3333 0.4999 5.7991 ( 0 7 15) 0 0.4924 0.6997 18 12 ( 1659 1fye_A) ( 6642 7req_B) 0.3333 0.4615 3.8684 ( 0 6 15) 0 0.4924 0.6572 18 13 -------------------------------------------------------------------------------------------------------------------------