------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1662 1fyx_A) ( 6 1a04_A) 0.5938 0.5745 3.4942 ( 2 13 28) 0 0.6999 0.6363 10 11 ( 1662 1fyx_A) ( 26 1a2o_A) 0.6999 0.6999 3.1539 ( 0 11 21) 0 0.7734 0.7734 10 10 ( 1662 1fyx_A) ( 90 1a9x_B) 0.7796 0.4433 4.2337 ( 1 14 28) 0 0.7796 0.4433 10 18 ( 1662 1fyx_A) ( 256 1b00_A) 0.7732 0.7732 4.5518 ( 1 13 28) 0 0.7788 0.7788 10 10 ( 1662 1fyx_A) ( 266 1b1c_A) 0.7840 0.7172 4.8581 ( 1 15 28) 0 0.7840 0.7172 10 11 ( 1662 1fyx_A) ( 428 1bmt_A) 0.5000 0.4545 2.9478 ( 0 5 10) 0 0.7732 0.7102 10 11 ( 1662 1fyx_A) ( 477 1bvy_F) 0.6859 0.7545 3.6737 ( 1 13 21) 0 0.6997 0.7773 10 9 ( 1662 1fyx_A) ( 523 1c4k_A) 0.5995 0.7485 6.4049 ( 0 8 15) 0 0.6996 0.8737 10 8 ( 1662 1fyx_A) ( 562 1ccw_A) 0.6987 0.6987 6.6745 ( 0 10 21) 0 0.7729 0.7729 10 10 ( 1662 1fyx_A) ( 745 1d4a_A) 0.7074 0.5178 6.5633 ( 2 18 28) 0 0.7074 0.5178 10 15 ( 1662 1fyx_A) ( 786 1dbw_A) 0.6726 0.6726 4.2009 ( 2 16 28) 0 0.6999 0.6999 10 10 ( 1662 1fyx_A) ( 793 1dcf_A) 0.6999 0.6999 3.2023 ( 0 9 21) 0 0.7731 0.7731 10 10 ( 1662 1fyx_A) ( 971 1dxy ) 0.5386 0.5737 3.0951 ( 1 7 15) 0 0.6473 0.6959 10 9 ( 1662 1fyx_A) ( 980 1dz3_A) 0.5713 0.5713 9.8926 ( 1 9 15) 0 0.6627 0.6627 10 10 ( 1662 1fyx_A) ( 1042 1e5d_A) 0.6237 0.6237 3.8010 ( 2 14 28) 0 0.7787 0.7787 10 10 ( 1662 1fyx_A) ( 1177 1eiw_A) 0.6996 0.7771 5.0158 ( 0 12 21) 0 0.7796 0.8555 10 9 ( 1662 1fyx_A) ( 1252 1es9_A) 0.6996 0.5832 4.8420 ( 0 11 21) 0 0.6996 0.5832 10 12 ( 1662 1fyx_A) ( 1253 1esc ) 0.5999 0.3529 4.2179 ( 0 8 15) 0 0.5999 0.3966 10 17 ( 1662 1fyx_A) ( 1266 1euc_B) 0.7338 0.6371 4.7088 ( 1 10 28) 0 0.7617 0.6503 10 12 ( 1662 1fyx_A) ( 1379 1f2v_A) 0.6632 0.4336 3.9587 ( 1 10 21) 0 0.6632 0.4779 10 16 ( 1662 1fyx_A) ( 1397 1f4p_A) 0.6632 0.7193 3.6463 ( 1 10 21) 0 0.6998 0.7775 10 9 ( 1662 1fyx_A) ( 1443 1f8y_A) 0.4531 0.4233 3.9069 ( 1 6 10) 0 0.6893 0.6384 10 11 ( 1662 1fyx_A) ( 1516 1fjg_B) 0.4000 0.3333 3.3957 ( 0 0 6) 0 0.7000 0.5833 10 12 ( 1662 1fyx_A) ( 1547 1flc_A) 0.5999 0.3333 4.1354 ( 0 4 15) 0 0.7985 0.4444 10 18 ( 1662 1fyx_A) ( 1659 1fye_A) 0.5656 0.3773 3.4050 ( 2 13 21) 0 0.6919 0.4390 10 18 ( 1662 1fyx_A) ( 1662 1fyx_A) 1.0000 1.0000 0.0000 ( 0 35 45) 0 1.0000 1.0000 10 10 ( 1662 1fyx_A) ( 1700 1g2i_A) 0.6892 0.4979 4.7209 ( 1 14 21) 0 0.6892 0.4979 10 14 ( 1662 1fyx_A) ( 1803 1gdh_A) 0.6998 0.6998 4.1052 ( 0 7 21) 0 0.7977 0.7977 10 10 ( 1662 1fyx_A) ( 1901 1gpm_A) 0.4531 0.3070 4.0338 ( 1 6 10) 0 0.6921 0.4860 10 16 ( 1662 1fyx_A) ( 2027 1h05_A) 0.8778 0.8041 4.6887 ( 1 16 36) 0 0.8778 0.8041 10 11 ( 1662 1fyx_A) ( 2427 1i7q_B) 0.6921 0.4365 3.2198 ( 2 17 28) 0 0.7839 0.4587 10 18 ( 1662 1fyx_A) ( 2470 1iex_A) 0.7644 0.6515 4.3166 ( 1 12 28) 0 0.7644 0.6515 10 12 ( 1662 1fyx_A) ( 2714 1j2y_A) 0.6997 0.6361 4.8242 ( 0 10 21) 0 0.6997 0.6529 10 11 ( 1662 1fyx_A) ( 2729 1j4a_A) 0.6738 0.6738 3.7717 ( 1 11 21) 0 0.6738 0.6738 10 10 ( 1662 1fyx_A) ( 2809 1jbe_A) 0.7645 0.7645 4.0724 ( 1 12 28) 0 0.7994 0.7994 10 10 ( 1662 1fyx_A) ( 3034 1jrl_A) 0.5987 0.5987 8.1113 ( 0 6 15) 0 0.6628 0.6628 10 10 ( 1662 1fyx_A) ( 3073 1jvn_A) 0.6892 0.3680 4.8072 ( 1 14 21) 0 0.6991 0.4009 10 19 ( 1662 1fyx_A) ( 3189 1k66_A) 0.7520 0.6961 3.5402 ( 1 11 28) 0 0.7790 0.7140 10 11 ( 1662 1fyx_A) ( 3190 1k68_A) 0.6739 0.6739 2.7723 ( 1 11 21) 0 0.7324 0.7324 10 10 ( 1662 1fyx_A) ( 3199 1k7c_A) 0.3999 0.2667 6.8938 ( 0 2 6) 0 0.5993 0.4316 10 15 ( 1662 1fyx_A) ( 3234 1k9v_F) 0.4613 0.3855 4.2638 ( 4 19 28) 0 0.7224 0.4393 10 18 ( 1662 1fyx_A) ( 3238 1ka9_H) 0.6237 0.4719 4.0465 ( 3 21 28) 0 0.6237 0.4719 10 16 ( 1662 1fyx_A) ( 3295 1kgs_A) 0.6000 0.6000 2.8365 ( 0 3 15) 0 0.6236 0.6236 10 10 ( 1662 1fyx_A) ( 3412 1krw_A) 0.6632 0.6632 3.9221 ( 1 10 21) 0 0.7992 0.7992 10 10 ( 1662 1fyx_A) ( 3462 1kwg_A) 0.6999 0.4375 3.3350 ( 0 10 21) 0 0.7735 0.4973 10 16 ( 1662 1fyx_A) ( 3560 1l7d_A) 0.4998 0.2941 6.7030 ( 0 3 10) 0 0.6996 0.4179 10 17 ( 1662 1fyx_A) ( 3581 1l9x_A) 0.7919 0.3477 4.4586 ( 1 18 28) 0 0.7919 0.3849 10 23 ( 1662 1fyx_A) ( 3632 1li4_A) 0.5600 0.3309 4.9077 ( 1 8 15) 0 0.7729 0.4441 10 18 ( 1662 1fyx_A) ( 3801 1m2e_A) 0.6498 0.6766 4.8728 ( 2 15 28) 0 0.7862 0.8660 10 9 ( 1662 1fyx_A) ( 3896 1mb3_A) 0.7798 0.7798 3.5886 ( 1 14 28) 0 0.7798 0.7798 10 10 ( 1662 1fyx_A) ( 4066 1mx3_A) 0.6236 0.5849 4.4787 ( 1 8 21) 0 0.7333 0.6832 10 11 ( 1662 1fyx_A) ( 4130 1n57_A) 0.3999 0.2222 7.4199 ( 0 4 6) 0 0.7081 0.4604 10 18 ( 1662 1fyx_A) ( 4185 1nat ) 0.7997 0.7997 3.7790 ( 0 10 28) 0 0.7997 0.7997 10 10 ( 1662 1fyx_A) ( 4323 1nni_1) 0.7845 0.7175 3.2680 ( 1 15 28) 0 0.8191 0.7644 10 11 ( 1662 1fyx_A) ( 4433 1ny5_A) 0.7978 0.7978 6.5176 ( 0 9 28) 0 0.7978 0.7978 10 10 ( 1662 1fyx_A) ( 4474 1o1y_A) 0.6737 0.3673 4.2993 ( 1 11 21) 0 0.6737 0.4549 10 19 ( 1662 1fyx_A) ( 4590 1obo_A) 0.6739 0.6739 3.3036 ( 1 11 21) 0 0.6992 0.6992 10 10 ( 1662 1fyx_A) ( 4669 1oi7_A) 0.7644 0.7044 4.2123 ( 1 12 28) 0 0.7644 0.7044 10 11 ( 1662 1fyx_A) ( 4787 1ou0_A) 0.5999 0.3529 4.0314 ( 0 9 15) 0 0.6998 0.4593 10 17 ( 1662 1fyx_A) ( 4813 1oxb_B) 0.6000 0.6000 3.0155 ( 0 5 15) 0 0.6737 0.6737 10 10 ( 1662 1fyx_A) ( 4871 1p2f_A) 0.7995 0.7995 4.3732 ( 0 9 28) 0 0.7995 0.7995 10 10 ( 1662 1fyx_A) ( 4905 1p5f_A) 0.7797 0.5675 4.0257 ( 1 14 28) 0 0.7797 0.5675 10 14 ( 1662 1fyx_A) ( 4916 1p6u_A) 0.6999 0.6999 3.4685 ( 0 7 21) 0 0.6999 0.6999 10 10 ( 1662 1fyx_A) ( 4926 1p80_A) 0.4000 0.3077 4.8958 ( 0 4 6) 0 0.5357 0.4948 10 13 ( 1662 1fyx_A) ( 5096 1psd_A) 0.5385 0.5561 4.6290 ( 1 6 21) 0 0.6997 0.7772 10 9 ( 1662 1fyx_A) ( 5234 1q7r_A) 0.5829 0.4209 4.7567 ( 3 19 28) 0 0.7081 0.4825 10 18 ( 1662 1fyx_A) ( 5289 1qcz_A) 0.6999 0.6999 3.6233 ( 0 8 21) 0 0.7637 0.7637 10 10 ( 1662 1fyx_A) ( 5297 1qdl_B) 0.7797 0.4691 3.9600 ( 1 14 28) 0 0.7797 0.4691 10 17 ( 1662 1fyx_A) ( 5364 1qkk_A) 0.7497 0.7497 7.2194 ( 1 11 28) 0 0.7600 0.7600 10 10 ( 1662 1fyx_A) ( 5397 1qo0_D) 0.6561 0.5642 11.0910 ( 1 10 21) 0 0.6906 0.5795 10 12 ( 1662 1fyx_A) ( 5470 1qvz_A) 0.4999 0.3125 4.6153 ( 0 6 10) 0 0.7083 0.5325 10 16 ( 1662 1fyx_A) ( 5673 1rli_A) 0.6912 0.6147 6.2769 ( 2 17 28) 0 0.6912 0.6147 10 12 ( 1662 1fyx_A) ( 5752 1s2d_A) 0.6809 0.7465 4.3082 ( 1 12 21) 0 0.6809 0.7465 10 9 ( 1662 1fyx_A) ( 5785 1say_A) 0.7733 0.4199 4.3637 ( 1 13 28) 0 0.7842 0.4204 10 19 ( 1662 1fyx_A) ( 5842 1sqs_A) 0.6988 0.4998 6.5366 ( 0 11 21) 0 0.6995 0.5390 10 14 ( 1662 1fyx_A) ( 5920 1tmy ) 0.7734 0.7734 3.8120 ( 1 13 28) 0 0.7734 0.7734 10 10 ( 1662 1fyx_A) ( 6242 1vhq_A) 0.7084 0.5502 4.3914 ( 2 18 28) 0 0.7915 0.5698 10 14 ( 1662 1fyx_A) ( 6258 1vi6_A) 0.5000 0.3846 2.8782 ( 0 5 10) 0 0.6040 0.5368 10 13 ( 1662 1fyx_A) ( 6283 1vjg_A) 0.5985 0.4994 8.4585 ( 0 8 15) 0 0.6997 0.6038 10 12 ( 1662 1fyx_A) ( 6496 2nac_A) 0.6999 0.5384 3.7718 ( 0 9 21) 0 0.6999 0.5703 10 13 ( 1662 1fyx_A) ( 6624 5nul ) 0.6498 0.6498 4.3928 ( 2 15 28) 0 0.7329 0.7329 10 10 ( 1662 1fyx_A) ( 6640 7req_A) 0.6810 0.5754 3.8646 ( 1 12 21) 0 0.7775 0.6573 10 12 ( 1662 1fyx_A) ( 6642 7req_B) 0.6474 0.5853 4.0984 ( 3 21 36) 0 0.6723 0.5853 10 13 -------------------------------------------------------------------------------------------------------------------------