------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1803 1gdh_A) ( 6 1a04_A) 0.9640 0.8861 4.3695 ( 1 16 45) 0 0.9640 0.8861 10 11 ( 1803 1gdh_A) ( 26 1a2o_A) 0.9703 0.9703 4.8320 ( 1 17 45) 0 0.9703 0.9703 10 10 ( 1803 1gdh_A) ( 90 1a9x_B) 0.6099 0.4945 5.4847 ( 3 19 45) 0 0.7518 0.4945 10 18 ( 1803 1gdh_A) ( 256 1b00_A) 0.8989 0.8989 4.6714 ( 0 13 36) 0 0.8989 0.8989 10 10 ( 1803 1gdh_A) ( 266 1b1c_A) 0.5999 0.5454 3.9010 ( 0 3 15) 0 0.8969 0.8162 10 11 ( 1803 1gdh_A) ( 428 1bmt_A) 0.8993 0.8178 4.1707 ( 0 13 36) 0 0.8993 0.8178 10 11 ( 1803 1gdh_A) ( 477 1bvy_F) 0.7992 0.8876 4.9920 ( 0 9 28) 0 0.7993 0.8876 10 9 ( 1803 1gdh_A) ( 523 1c4k_A) 0.4997 0.6240 7.2918 ( 0 2 10) 0 0.5996 0.7488 10 8 ( 1803 1gdh_A) ( 562 1ccw_A) 0.8978 0.8978 5.5999 ( 0 10 36) 0 0.8978 0.8978 10 10 ( 1803 1gdh_A) ( 745 1d4a_A) 0.4999 0.3333 5.0493 ( 0 3 10) 0 0.9649 0.6617 10 15 ( 1803 1gdh_A) ( 786 1dbw_A) 0.9976 0.9976 5.0104 ( 0 14 45) 0 0.9976 0.9976 10 10 ( 1803 1gdh_A) ( 793 1dcf_A) 0.7647 0.7647 4.8251 ( 2 17 45) 0 0.8977 0.8977 10 10 ( 1803 1gdh_A) ( 971 1dxy ) 0.8999 0.9998 2.5836 ( 0 14 36) 0 0.8999 0.9998 10 9 ( 1803 1gdh_A) ( 980 1dz3_A) 0.8995 0.8995 3.8272 ( 0 10 36) 0 0.8995 0.8995 10 10 ( 1803 1gdh_A) ( 1042 1e5d_A) 0.6000 0.6000 3.4270 ( 0 4 15) 0 0.9946 0.9946 10 10 ( 1803 1gdh_A) ( 1177 1eiw_A) 0.7081 0.7336 5.2313 ( 2 16 36) 0 0.7081 0.7336 10 9 ( 1803 1gdh_A) ( 1252 1es9_A) 0.8990 0.7496 4.5357 ( 0 15 36) 0 0.9530 0.8133 10 12 ( 1803 1gdh_A) ( 1253 1esc ) 0.9648 0.5855 6.8986 ( 1 17 45) 0 0.9648 0.5855 10 17 ( 1803 1gdh_A) ( 1266 1euc_B) 0.9051 0.7903 4.7521 ( 1 12 45) 0 0.9051 0.7903 10 12 ( 1803 1gdh_A) ( 1379 1f2v_A) 0.5999 0.3750 4.5831 ( 0 2 15) 0 0.5999 0.4890 10 16 ( 1803 1gdh_A) ( 1397 1f4p_A) 0.5990 0.6650 7.6156 ( 0 0 15) 0 0.8976 0.9959 10 9 ( 1803 1gdh_A) ( 1443 1f8y_A) 0.5997 0.5453 5.5667 ( 0 5 15) 0 0.6979 0.6351 10 11 ( 1803 1gdh_A) ( 1516 1fjg_B) 0.4000 0.3333 3.0453 ( 0 0 6) 0 0.6990 0.5829 10 12 ( 1803 1gdh_A) ( 1547 1flc_A) 0.8393 0.4962 4.9097 ( 1 12 36) 0 0.8393 0.4962 10 18 ( 1803 1gdh_A) ( 1659 1fye_A) 0.5993 0.3333 6.9788 ( 0 5 15) 0 0.8609 0.4977 10 18 ( 1803 1gdh_A) ( 1662 1fyx_A) 0.6998 0.6998 4.1052 ( 0 7 21) 0 0.7977 0.7977 10 10 ( 1803 1gdh_A) ( 1700 1g2i_A) 0.7516 0.5613 4.9912 ( 1 11 28) 0 0.7641 0.5642 10 14 ( 1803 1gdh_A) ( 1803 1gdh_A) 1.0000 1.0000 0.0000 ( 0 20 45) 0 1.0000 1.0000 10 10 ( 1803 1gdh_A) ( 1901 1gpm_A) 0.7997 0.5000 4.0603 ( 0 11 28) 0 0.7997 0.5032 10 16 ( 1803 1gdh_A) ( 2027 1h05_A) 0.8998 0.8180 3.1726 ( 0 11 36) 0 0.8998 0.8180 10 11 ( 1803 1gdh_A) ( 2427 1i7q_B) 0.7997 0.4444 3.7629 ( 0 12 28) 0 0.8986 0.5327 10 18 ( 1803 1gdh_A) ( 2470 1iex_A) 0.9640 0.8182 4.3055 ( 1 16 45) 0 0.9640 0.8182 10 12 ( 1803 1gdh_A) ( 2714 1j2y_A) 0.8989 0.8175 4.6577 ( 0 14 36) 0 0.8989 0.8175 10 11 ( 1803 1gdh_A) ( 2729 1j4a_A) 0.9774 0.9774 2.4240 ( 1 18 45) 0 0.9774 0.9774 10 10 ( 1803 1gdh_A) ( 2809 1jbe_A) 0.6631 0.6631 4.8278 ( 2 14 45) 0 0.8389 0.8389 10 10 ( 1803 1gdh_A) ( 3034 1jrl_A) 0.8984 0.8984 5.1922 ( 0 10 36) 0 0.8984 0.8984 10 10 ( 1803 1gdh_A) ( 3073 1jvn_A) 0.7644 0.4195 4.4071 ( 1 12 28) 0 0.7644 0.4649 10 19 ( 1803 1gdh_A) ( 3189 1k66_A) 0.9269 0.8611 4.1738 ( 1 13 45) 0 0.9269 0.8611 10 11 ( 1803 1gdh_A) ( 3190 1k68_A) 0.9271 0.9271 3.9490 ( 1 13 45) 0 0.9271 0.9271 10 10 ( 1803 1gdh_A) ( 3199 1k7c_A) 0.8990 0.5999 4.5911 ( 0 14 36) 0 0.8990 0.5999 10 15 ( 1803 1gdh_A) ( 3234 1k9v_F) 0.7994 0.4444 4.7187 ( 0 13 28) 0 0.7994 0.4444 10 18 ( 1803 1gdh_A) ( 3238 1ka9_H) 0.7992 0.4999 5.0583 ( 0 12 28) 0 0.7994 0.4999 10 16 ( 1803 1gdh_A) ( 3295 1kgs_A) 0.8992 0.8992 4.3341 ( 0 9 36) 0 0.8992 0.8992 10 10 ( 1803 1gdh_A) ( 3412 1krw_A) 0.9272 0.9272 3.6193 ( 1 13 45) 0 0.9272 0.9272 10 10 ( 1803 1gdh_A) ( 3462 1kwg_A) 0.5601 0.4531 4.4427 ( 2 12 28) 0 0.7335 0.4924 10 16 ( 1803 1gdh_A) ( 3560 1l7d_A) 0.6981 0.4116 7.3870 ( 0 9 21) 0 0.8994 0.5294 10 17 ( 1803 1gdh_A) ( 3581 1l9x_A) 0.7734 0.3474 3.9952 ( 1 13 28) 0 0.8717 0.3908 10 23 ( 1803 1gdh_A) ( 3632 1li4_A) 0.9708 0.5539 4.4378 ( 1 17 45) 0 0.9908 0.5551 10 18 ( 1803 1gdh_A) ( 3801 1m2e_A) 0.8634 0.9411 5.5668 ( 1 14 36) 0 0.8944 0.9905 10 9 ( 1803 1gdh_A) ( 3896 1mb3_A) 0.9431 0.9431 3.9971 ( 1 14 45) 0 0.9431 0.9431 10 10 ( 1803 1gdh_A) ( 4066 1mx3_A) 0.8652 0.7959 1.8688 ( 1 14 36) 0 0.8652 0.7959 10 11 ( 1803 1gdh_A) ( 4130 1n57_A) 0.7519 0.4415 4.2710 ( 1 11 28) 0 0.7635 0.4886 10 18 ( 1803 1gdh_A) ( 4185 1nat ) 0.9990 0.9990 4.0290 ( 0 12 45) 0 0.9990 0.9990 10 10 ( 1803 1gdh_A) ( 4323 1nni_1) 0.6998 0.6362 4.2879 ( 0 6 21) 0 0.9948 0.9059 10 11 ( 1803 1gdh_A) ( 4433 1ny5_A) 0.9891 0.9891 7.3549 ( 0 11 45) 0 0.9891 0.9891 10 10 ( 1803 1gdh_A) ( 4474 1o1y_A) 0.5998 0.3158 5.2022 ( 0 5 15) 0 0.7991 0.4210 10 19 ( 1803 1gdh_A) ( 4590 1obo_A) 0.6000 0.6000 3.0441 ( 0 4 15) 0 0.8979 0.8979 10 10 ( 1803 1gdh_A) ( 4669 1oi7_A) 0.8989 0.8175 4.7199 ( 0 8 36) 0 0.8989 0.8175 10 11 ( 1803 1gdh_A) ( 4787 1ou0_A) 0.6472 0.4932 5.0212 ( 1 7 36) 0 0.6472 0.4932 10 17 ( 1803 1gdh_A) ( 4813 1oxb_B) 0.8540 0.8540 4.4809 ( 1 13 36) 0 0.8969 0.8969 10 10 ( 1803 1gdh_A) ( 4871 1p2f_A) 0.6237 0.6237 4.7648 ( 2 13 45) 0 0.8976 0.8976 10 10 ( 1803 1gdh_A) ( 4905 1p5f_A) 0.7998 0.5714 3.5987 ( 0 11 28) 0 0.8509 0.6327 10 14 ( 1803 1gdh_A) ( 4916 1p6u_A) 0.7994 0.7994 4.7410 ( 0 6 28) 0 0.7994 0.7994 10 10 ( 1803 1gdh_A) ( 4926 1p80_A) 0.4999 0.3846 4.5269 ( 0 4 10) 0 0.7992 0.6152 10 13 ( 1803 1gdh_A) ( 5096 1psd_A) 0.9000 0.9999 2.1295 ( 0 7 36) 0 0.9000 0.9999 10 9 ( 1803 1gdh_A) ( 5234 1q7r_A) 0.7990 0.4444 5.3181 ( 0 11 28) 0 0.8625 0.4978 10 18 ( 1803 1gdh_A) ( 5289 1qcz_A) 0.7984 0.7984 6.0281 ( 0 7 28) 0 0.7993 0.7993 10 10 ( 1803 1gdh_A) ( 5297 1qdl_B) 0.8647 0.5267 4.1488 ( 1 14 36) 0 0.8647 0.5267 10 17 ( 1803 1gdh_A) ( 5364 1qkk_A) 0.9174 0.9174 7.9715 ( 1 13 45) 0 0.9174 0.9174 10 10 ( 1803 1gdh_A) ( 5397 1qo0_D) 0.8377 0.7227 11.2677 ( 1 14 36) 0 0.8679 0.7365 10 12 ( 1803 1gdh_A) ( 5470 1qvz_A) 0.4000 0.2500 5.1923 ( 0 1 6) 0 0.7083 0.4887 10 16 ( 1803 1gdh_A) ( 5673 1rli_A) 0.8534 0.7300 5.1932 ( 1 13 36) 0 0.8534 0.7300 10 12 ( 1803 1gdh_A) ( 5752 1s2d_A) 0.6234 0.6626 5.5963 ( 1 8 21) 0 0.7081 0.7513 10 9 ( 1803 1gdh_A) ( 5785 1say_A) 0.9986 0.5263 4.4190 ( 0 15 45) 0 0.9986 0.5263 10 19 ( 1803 1gdh_A) ( 5842 1sqs_A) 0.9049 0.6931 4.9605 ( 1 12 45) 0 0.9049 0.6931 10 14 ( 1803 1gdh_A) ( 5920 1tmy ) 0.9548 0.9548 4.3984 ( 1 15 45) 0 0.9548 0.9548 10 10 ( 1803 1gdh_A) ( 6242 1vhq_A) 0.4998 0.3571 6.1116 ( 0 5 10) 0 0.7642 0.5642 10 14 ( 1803 1gdh_A) ( 6258 1vi6_A) 0.6999 0.5384 3.8911 ( 0 6 21) 0 0.8187 0.6669 10 13 ( 1803 1gdh_A) ( 6283 1vjg_A) 0.8176 0.7128 6.7247 ( 1 11 36) 0 0.8370 0.7223 10 12 ( 1803 1gdh_A) ( 6496 2nac_A) 0.9996 0.7691 3.1898 ( 0 16 45) 0 0.9996 0.7691 10 13 ( 1803 1gdh_A) ( 6624 5nul ) 0.8383 0.8383 5.8868 ( 1 12 36) 0 0.9403 0.9403 10 10 ( 1803 1gdh_A) ( 6640 7req_A) 0.9701 0.8208 4.9880 ( 1 17 45) 0 0.9701 0.8208 10 12 ( 1803 1gdh_A) ( 6642 7req_B) 0.7518 0.6011 4.4825 ( 1 11 28) 0 0.8393 0.6741 10 13 -------------------------------------------------------------------------------------------------------------------------