------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2714 1j2y_A) ( 6 1a04_A) 0.8178 0.8178 4.1088 ( 0 15 36) 0 0.8178 0.8178 11 11 ( 2714 1j2y_A) ( 26 1a2o_A) 0.8179 0.8996 3.7080 ( 0 17 36) 0 0.8179 0.8996 11 10 ( 2714 1j2y_A) ( 90 1a9x_B) 0.4545 0.2778 4.1707 ( 0 2 10) 0 0.8132 0.4996 11 18 ( 2714 1j2y_A) ( 256 1b00_A) 0.8180 0.8997 3.3603 ( 0 14 36) 0 0.8180 0.8997 11 10 ( 2714 1j2y_A) ( 266 1b1c_A) 0.8090 0.8090 4.7479 ( 1 18 36) 0 0.8174 0.8174 11 11 ( 2714 1j2y_A) ( 428 1bmt_A) 0.8176 0.8176 4.4960 ( 0 14 36) 0 0.8176 0.8176 11 11 ( 2714 1j2y_A) ( 477 1bvy_F) 0.7222 0.8754 4.4295 ( 1 18 28) 0 0.7271 0.8885 11 9 ( 2714 1j2y_A) ( 523 1c4k_A) 0.5454 0.7499 2.9982 ( 0 5 15) 0 0.6834 0.8398 11 8 ( 2714 1j2y_A) ( 562 1ccw_A) 0.7271 0.7997 3.8249 ( 0 9 28) 0 0.7271 0.7997 11 10 ( 2714 1j2y_A) ( 745 1d4a_A) 0.8054 0.5972 6.3537 ( 1 17 36) 0 0.8163 0.5996 11 15 ( 2714 1j2y_A) ( 786 1dbw_A) 0.8180 0.8997 3.3145 ( 0 14 36) 0 0.8180 0.8997 11 10 ( 2714 1j2y_A) ( 793 1dcf_A) 0.8179 0.8995 3.8674 ( 0 15 36) 0 0.8179 0.8995 11 10 ( 2714 1j2y_A) ( 971 1dxy ) 0.7272 0.8887 3.0389 ( 0 13 28) 0 0.7272 0.8887 11 9 ( 2714 1j2y_A) ( 980 1dz3_A) 0.7272 0.7999 3.2508 ( 0 9 28) 0 0.7272 0.7999 11 10 ( 2714 1j2y_A) ( 1042 1e5d_A) 0.8176 0.8991 4.4440 ( 0 12 36) 0 0.8177 0.8993 11 10 ( 2714 1j2y_A) ( 1177 1eiw_A) 0.4545 0.5555 3.8637 ( 0 2 10) 0 0.6273 0.7541 11 9 ( 2714 1j2y_A) ( 1252 1es9_A) 0.8168 0.7491 5.6271 ( 0 15 36) 0 0.8168 0.7491 11 12 ( 2714 1j2y_A) ( 1253 1esc ) 0.8429 0.5795 6.9225 ( 2 24 45) 0 0.8429 0.5795 11 17 ( 2714 1j2y_A) ( 1266 1euc_B) 0.8177 0.7497 4.2458 ( 0 11 36) 0 0.8177 0.7497 11 12 ( 2714 1j2y_A) ( 1379 1f2v_A) 0.8039 0.5602 5.1504 ( 1 16 36) 0 0.8039 0.5602 11 16 ( 2714 1j2y_A) ( 1397 1f4p_A) 0.5453 0.6663 5.2656 ( 0 7 15) 0 0.8175 0.9981 11 9 ( 2714 1j2y_A) ( 1443 1f8y_A) 0.5741 0.5741 6.6855 ( 2 13 28) 0 0.6358 0.6358 11 11 ( 2714 1j2y_A) ( 1516 1fjg_B) 0.4545 0.4166 5.4838 ( 0 4 10) 0 0.6356 0.5829 11 12 ( 2714 1j2y_A) ( 1547 1flc_A) 0.6359 0.3889 5.7684 ( 0 7 21) 0 0.7269 0.4444 11 18 ( 2714 1j2y_A) ( 1659 1fye_A) 0.7265 0.4444 5.5565 ( 0 10 28) 0 0.7938 0.4978 11 18 ( 2714 1j2y_A) ( 1662 1fyx_A) 0.6383 0.6725 4.7415 ( 2 16 28) 0 0.6529 0.6997 11 10 ( 2714 1j2y_A) ( 1700 1g2i_A) 0.5048 0.4788 4.3494 ( 4 21 36) 0 0.7268 0.5713 11 14 ( 2714 1j2y_A) ( 1803 1gdh_A) 0.8175 0.8989 4.6577 ( 0 14 36) 0 0.8175 0.8989 11 10 ( 2714 1j2y_A) ( 1901 1gpm_A) 0.4545 0.3125 5.3907 ( 0 4 10) 0 0.8166 0.5623 11 16 ( 2714 1j2y_A) ( 2027 1h05_A) 0.9966 0.9966 2.9953 ( 1 30 55) 0 0.9966 0.9966 11 11 ( 2714 1j2y_A) ( 2427 1i7q_B) 0.8130 0.4996 4.3586 ( 1 21 36) 0 0.8132 0.4996 11 18 ( 2714 1j2y_A) ( 2470 1iex_A) 0.8173 0.7494 5.0786 ( 0 15 36) 0 0.8173 0.7494 11 12 ( 2714 1j2y_A) ( 2714 1j2y_A) 1.0000 1.0000 0.0000 ( 0 36 55) 0 1.0000 1.0000 11 11 ( 2714 1j2y_A) ( 2729 1j4a_A) 0.8177 0.8992 4.3121 ( 0 17 36) 0 0.8177 0.8992 11 10 ( 2714 1j2y_A) ( 2809 1jbe_A) 0.8180 0.8997 3.2511 ( 0 13 36) 0 0.8180 0.8997 11 10 ( 2714 1j2y_A) ( 3034 1jrl_A) 0.7264 0.7985 5.8624 ( 0 10 28) 0 0.7264 0.7985 11 10 ( 2714 1j2y_A) ( 3073 1jvn_A) 0.7263 0.4210 5.9721 ( 0 14 28) 0 0.7263 0.4309 11 19 ( 2714 1j2y_A) ( 3189 1k66_A) 0.8179 0.8179 3.6133 ( 0 13 36) 0 0.8179 0.8179 11 11 ( 2714 1j2y_A) ( 3190 1k68_A) 0.8180 0.8996 3.5759 ( 0 13 36) 0 0.8180 0.8996 11 10 ( 2714 1j2y_A) ( 3199 1k7c_A) 0.7264 0.5331 5.7965 ( 0 12 28) 0 0.8146 0.5992 11 15 ( 2714 1j2y_A) ( 3234 1k9v_F) 0.7264 0.4444 5.8085 ( 0 15 28) 0 0.7716 0.4955 11 18 ( 2714 1j2y_A) ( 3238 1ka9_H) 0.4754 0.4204 4.3977 ( 3 15 28) 0 0.7635 0.5529 11 16 ( 2714 1j2y_A) ( 3295 1kgs_A) 0.8180 0.8998 3.1247 ( 0 10 36) 0 0.8180 0.8998 11 10 ( 2714 1j2y_A) ( 3412 1krw_A) 0.8178 0.8994 4.0947 ( 0 11 36) 0 0.8178 0.8994 11 10 ( 2714 1j2y_A) ( 3462 1kwg_A) 0.5454 0.3750 4.4046 ( 0 7 15) 0 0.5974 0.5031 11 16 ( 2714 1j2y_A) ( 3560 1l7d_A) 0.5449 0.3529 7.4041 ( 0 7 15) 0 0.9002 0.5872 11 17 ( 2714 1j2y_A) ( 3581 1l9x_A) 0.3636 0.1739 2.5010 ( 0 3 6) 0 0.8122 0.3936 11 23 ( 2714 1j2y_A) ( 3632 1li4_A) 0.5453 0.3333 4.9053 ( 0 9 15) 0 0.8866 0.5535 11 18 ( 2714 1j2y_A) ( 3801 1m2e_A) 0.8177 0.9988 4.2270 ( 0 15 36) 0 0.8177 0.9988 11 9 ( 2714 1j2y_A) ( 3896 1mb3_A) 0.8180 0.8996 3.5747 ( 0 13 36) 0 0.8180 0.8996 11 10 ( 2714 1j2y_A) ( 4066 1mx3_A) 0.8172 0.8172 5.1286 ( 0 12 36) 0 0.8172 0.8172 11 11 ( 2714 1j2y_A) ( 4130 1n57_A) 0.4545 0.2778 5.3543 ( 0 4 10) 0 0.6956 0.4648 11 18 ( 2714 1j2y_A) ( 4185 1nat ) 0.8179 0.8995 3.7660 ( 0 12 36) 0 0.8179 0.8995 11 10 ( 2714 1j2y_A) ( 4323 1nni_1) 0.8173 0.8173 5.0568 ( 0 13 36) 0 0.8176 0.8176 11 11 ( 2714 1j2y_A) ( 4433 1ny5_A) 0.8178 0.8994 4.0206 ( 0 11 36) 0 0.8178 0.8994 11 10 ( 2714 1j2y_A) ( 4474 1o1y_A) 0.4545 0.2632 5.7743 ( 0 6 10) 0 0.8105 0.4732 11 19 ( 2714 1j2y_A) ( 4590 1obo_A) 0.8128 0.8914 4.8126 ( 1 21 36) 0 0.8172 0.8984 11 10 ( 2714 1j2y_A) ( 4669 1oi7_A) 0.6363 0.6363 3.2796 ( 0 7 21) 0 0.7268 0.7268 11 11 ( 2714 1j2y_A) ( 4787 1ou0_A) 0.7881 0.5257 5.1834 ( 1 13 36) 0 0.7881 0.5257 11 17 ( 2714 1j2y_A) ( 4813 1oxb_B) 0.8179 0.8996 3.6870 ( 0 13 36) 0 0.8179 0.8996 11 10 ( 2714 1j2y_A) ( 4871 1p2f_A) 0.8179 0.8995 3.7916 ( 0 12 36) 0 0.8179 0.8995 11 10 ( 2714 1j2y_A) ( 4905 1p5f_A) 0.7330 0.6129 4.0807 ( 2 19 36) 0 0.7330 0.6206 11 14 ( 2714 1j2y_A) ( 4916 1p6u_A) 0.7270 0.7995 4.3950 ( 0 7 28) 0 0.7270 0.7995 11 10 ( 2714 1j2y_A) ( 4926 1p80_A) 0.7208 0.6125 5.1752 ( 1 17 28) 0 0.7208 0.6125 11 13 ( 2714 1j2y_A) ( 5096 1psd_A) 0.7269 0.8880 4.5371 ( 0 6 28) 0 0.7269 0.8880 11 9 ( 2714 1j2y_A) ( 5234 1q7r_A) 0.8171 0.4999 5.2331 ( 0 15 36) 0 0.8171 0.4999 11 18 ( 2714 1j2y_A) ( 5289 1qcz_A) 0.7272 0.7999 3.1102 ( 0 8 28) 0 0.7272 0.7999 11 10 ( 2714 1j2y_A) ( 5297 1qdl_B) 0.8066 0.5281 5.1528 ( 1 17 36) 0 0.8066 0.5516 11 17 ( 2714 1j2y_A) ( 5364 1qkk_A) 0.8176 0.8991 4.4757 ( 0 13 36) 0 0.8176 0.8991 11 10 ( 2714 1j2y_A) ( 5397 1qo0_D) 0.7236 0.6643 8.2962 ( 0 14 28) 0 0.8115 0.7456 11 12 ( 2714 1j2y_A) ( 5470 1qvz_A) 0.4545 0.3125 3.2277 ( 0 4 10) 0 0.6378 0.5027 11 16 ( 2714 1j2y_A) ( 5673 1rli_A) 0.8079 0.7433 6.0646 ( 1 18 36) 0 0.8160 0.7486 11 12 ( 2714 1j2y_A) ( 5752 1s2d_A) 0.4348 0.4428 6.3219 ( 2 9 28) 0 0.5991 0.6447 11 9 ( 2714 1j2y_A) ( 5785 1say_A) 0.8175 0.4736 4.6814 ( 0 13 36) 0 0.8175 0.5119 11 19 ( 2714 1j2y_A) ( 5842 1sqs_A) 0.8172 0.6426 5.1283 ( 0 10 36) 0 0.8172 0.6654 11 14 ( 2714 1j2y_A) ( 5920 1tmy ) 0.8180 0.8996 3.5436 ( 0 15 36) 0 0.8180 0.8996 11 10 ( 2714 1j2y_A) ( 6242 1vhq_A) 0.4545 0.3571 3.1297 ( 0 4 10) 0 0.8119 0.6410 11 14 ( 2714 1j2y_A) ( 6258 1vi6_A) 0.6362 0.5384 4.3367 ( 0 9 21) 0 0.7269 0.6152 11 13 ( 2714 1j2y_A) ( 6283 1vjg_A) 0.5626 0.5502 6.8164 ( 3 18 36) 0 0.8329 0.7810 11 12 ( 2714 1j2y_A) ( 6496 2nac_A) 0.8176 0.6921 4.4590 ( 0 16 36) 0 0.8176 0.6921 11 13 ( 2714 1j2y_A) ( 6624 5nul ) 0.6362 0.6997 4.4799 ( 0 10 21) 0 0.8175 0.8988 11 10 ( 2714 1j2y_A) ( 6640 7req_A) 0.8179 0.7498 3.6737 ( 0 17 36) 0 0.8356 0.7830 11 12 ( 2714 1j2y_A) ( 6642 7req_B) 0.7288 0.6709 4.6197 ( 3 25 45) 0 0.8064 0.6871 11 13 -------------------------------------------------------------------------------------------------------------------------