------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2809 1jbe_A) ( 6 1a04_A) 0.9997 0.9089 3.0006 ( 0 21 45) 0 0.9997 0.9089 10 11 ( 2809 1jbe_A) ( 26 1a2o_A) 0.9998 0.9998 2.7828 ( 0 22 45) 0 0.9998 0.9998 10 10 ( 2809 1jbe_A) ( 90 1a9x_B) 0.8998 0.5000 3.0335 ( 0 14 36) 0 0.8998 0.5000 10 18 ( 2809 1jbe_A) ( 256 1b00_A) 0.9997 0.9997 3.0941 ( 0 20 45) 0 0.9997 0.9997 10 10 ( 2809 1jbe_A) ( 266 1b1c_A) 0.8992 0.8177 4.3778 ( 0 13 36) 0 0.9969 0.9071 10 11 ( 2809 1jbe_A) ( 428 1bmt_A) 0.9993 0.9087 3.6473 ( 0 21 45) 0 0.9993 0.9087 10 11 ( 2809 1jbe_A) ( 477 1bvy_F) 0.7998 0.8886 3.4627 ( 0 13 28) 0 0.7999 0.8887 10 9 ( 2809 1jbe_A) ( 523 1c4k_A) 0.7734 0.9271 3.8812 ( 1 13 28) 0 0.7734 0.9271 10 8 ( 2809 1jbe_A) ( 562 1ccw_A) 0.8997 0.8997 3.2701 ( 0 14 36) 0 0.8997 0.8997 10 10 ( 2809 1jbe_A) ( 745 1d4a_A) 0.8978 0.5997 5.6113 ( 0 17 36) 0 0.9954 0.6661 10 15 ( 2809 1jbe_A) ( 786 1dbw_A) 0.9895 0.9895 2.1590 ( 1 22 45) 0 0.9895 0.9895 10 10 ( 2809 1jbe_A) ( 793 1dcf_A) 0.9999 0.9999 2.0687 ( 0 23 45) 0 0.9999 0.9999 10 10 ( 2809 1jbe_A) ( 971 1dxy ) 0.8400 0.9060 3.3929 ( 1 12 36) 0 0.8400 0.9060 10 9 ( 2809 1jbe_A) ( 980 1dz3_A) 0.8999 0.8999 2.3589 ( 0 15 36) 0 0.8999 0.8999 10 10 ( 2809 1jbe_A) ( 1042 1e5d_A) 0.7649 0.7649 4.2392 ( 2 17 45) 0 0.9474 0.9474 10 10 ( 2809 1jbe_A) ( 1177 1eiw_A) 0.5045 0.5289 3.5445 ( 1 6 15) 0 0.5996 0.6659 10 9 ( 2809 1jbe_A) ( 1252 1es9_A) 0.8589 0.7656 5.6088 ( 2 21 45) 0 0.9950 0.8313 10 12 ( 2809 1jbe_A) ( 1253 1esc ) 0.9868 0.5873 7.7387 ( 0 22 45) 0 0.9868 0.5873 10 17 ( 2809 1jbe_A) ( 1266 1euc_B) 0.9810 0.8255 3.6800 ( 1 19 45) 0 0.9810 0.8255 10 12 ( 2809 1jbe_A) ( 1379 1f2v_A) 0.9760 0.6226 4.5906 ( 1 18 45) 0 0.9760 0.6226 10 16 ( 2809 1jbe_A) ( 1397 1f4p_A) 0.6795 0.7000 4.3055 ( 2 15 36) 0 0.8645 0.9427 10 9 ( 2809 1jbe_A) ( 1443 1f8y_A) 0.4995 0.4542 8.0177 ( 0 5 10) 0 0.4999 0.4545 10 11 ( 2809 1jbe_A) ( 1516 1fjg_B) 0.5385 0.4972 4.8983 ( 1 6 21) 0 0.5385 0.4972 10 12 ( 2809 1jbe_A) ( 1547 1flc_A) 0.5228 0.4067 5.2410 ( 2 11 28) 0 0.7979 0.4443 10 18 ( 2809 1jbe_A) ( 1659 1fye_A) 0.5999 0.3333 4.3316 ( 0 9 15) 0 0.7995 0.4719 10 18 ( 2809 1jbe_A) ( 1662 1fyx_A) 0.7645 0.7645 4.0724 ( 1 12 28) 0 0.7994 0.7994 10 10 ( 2809 1jbe_A) ( 1700 1g2i_A) 0.7338 0.5988 5.0333 ( 2 17 36) 0 0.7995 0.6061 10 14 ( 2809 1jbe_A) ( 1803 1gdh_A) 0.6631 0.6631 4.8278 ( 2 14 45) 0 0.8389 0.8389 10 10 ( 2809 1jbe_A) ( 1901 1gpm_A) 0.5180 0.4599 2.9891 ( 3 16 36) 0 0.8990 0.5624 10 16 ( 2809 1jbe_A) ( 2027 1h05_A) 0.8996 0.8180 3.5595 ( 0 8 36) 0 0.8996 0.8180 10 11 ( 2809 1jbe_A) ( 2427 1i7q_B) 0.7086 0.4826 3.0785 ( 2 16 36) 0 0.7995 0.4826 10 18 ( 2809 1jbe_A) ( 2470 1iex_A) 0.9991 0.8330 3.9232 ( 0 18 45) 0 0.9991 0.8330 10 12 ( 2809 1jbe_A) ( 2714 1j2y_A) 0.8997 0.8180 3.2511 ( 0 13 36) 0 0.8997 0.8180 10 11 ( 2809 1jbe_A) ( 2729 1j4a_A) 0.9985 0.9985 4.4412 ( 0 18 45) 0 0.9985 0.9985 10 10 ( 2809 1jbe_A) ( 2809 1jbe_A) 1.0000 1.0000 0.0000 ( 0 26 45) 0 1.0000 1.0000 10 10 ( 2809 1jbe_A) ( 3034 1jrl_A) 0.8976 0.8976 5.7288 ( 0 14 36) 0 0.8976 0.8976 10 10 ( 2809 1jbe_A) ( 3073 1jvn_A) 0.7993 0.4210 4.9496 ( 0 15 28) 0 0.8977 0.4736 10 19 ( 2809 1jbe_A) ( 3189 1k66_A) 0.9998 0.9089 2.7897 ( 0 20 45) 0 0.9998 0.9089 10 11 ( 2809 1jbe_A) ( 3190 1k68_A) 0.9997 0.9997 2.8674 ( 0 20 45) 0 0.9997 0.9997 10 10 ( 2809 1jbe_A) ( 3199 1k7c_A) 0.8986 0.5998 4.9953 ( 0 15 36) 0 0.8986 0.5998 10 15 ( 2809 1jbe_A) ( 3234 1k9v_F) 0.7992 0.4444 5.0516 ( 0 14 28) 0 0.7992 0.4444 10 18 ( 2809 1jbe_A) ( 3238 1ka9_H) 0.7988 0.4999 5.5218 ( 0 14 28) 0 0.8959 0.5621 10 16 ( 2809 1jbe_A) ( 3295 1kgs_A) 0.8730 0.8730 2.0185 ( 1 15 36) 0 0.8969 0.8969 10 10 ( 2809 1jbe_A) ( 3412 1krw_A) 0.9813 0.9813 3.2673 ( 1 19 45) 0 0.9813 0.9813 10 10 ( 2809 1jbe_A) ( 3462 1kwg_A) 0.8997 0.5625 3.2804 ( 0 14 36) 0 0.8997 0.5625 10 16 ( 2809 1jbe_A) ( 3560 1l7d_A) 0.8710 0.5272 5.6976 ( 1 15 36) 0 0.8989 0.5293 10 17 ( 2809 1jbe_A) ( 3581 1l9x_A) 0.8817 0.3910 5.1761 ( 1 17 36) 0 0.8972 0.4309 10 23 ( 2809 1jbe_A) ( 3632 1li4_A) 0.9756 0.5542 4.9011 ( 1 18 45) 0 0.9756 0.5542 10 18 ( 2809 1jbe_A) ( 3801 1m2e_A) 0.8999 0.9998 2.7817 ( 0 20 36) 0 0.8999 0.9998 10 9 ( 2809 1jbe_A) ( 3896 1mb3_A) 0.9999 0.9999 1.9279 ( 0 21 45) 0 0.9999 0.9999 10 10 ( 2809 1jbe_A) ( 4066 1mx3_A) 0.8194 0.7646 5.1896 ( 1 11 36) 0 0.8969 0.8163 10 11 ( 2809 1jbe_A) ( 4130 1n57_A) 0.7086 0.4381 3.2708 ( 1 9 28) 0 0.7086 0.4381 10 18 ( 2809 1jbe_A) ( 4185 1nat ) 0.9999 0.9999 2.3782 ( 0 18 45) 0 0.9999 0.9999 10 10 ( 2809 1jbe_A) ( 4323 1nni_1) 0.8995 0.8178 3.9405 ( 0 17 36) 0 0.8995 0.8179 10 11 ( 2809 1jbe_A) ( 4433 1ny5_A) 0.9987 0.9987 4.2909 ( 0 18 45) 0 0.9987 0.9987 10 10 ( 2809 1jbe_A) ( 4474 1o1y_A) 0.5937 0.4043 3.6845 ( 2 13 28) 0 0.5937 0.4043 10 19 ( 2809 1jbe_A) ( 4590 1obo_A) 0.8178 0.8178 4.8395 ( 2 19 45) 0 0.8995 0.8995 10 10 ( 2809 1jbe_A) ( 4669 1oi7_A) 0.8999 0.8181 2.6271 ( 0 12 36) 0 0.8999 0.8181 10 11 ( 2809 1jbe_A) ( 4787 1ou0_A) 0.9801 0.5868 4.6238 ( 1 19 45) 0 0.9801 0.5868 10 17 ( 2809 1jbe_A) ( 4813 1oxb_B) 0.9999 0.9999 1.8291 ( 0 23 45) 0 0.9999 0.9999 10 10 ( 2809 1jbe_A) ( 4871 1p2f_A) 0.9998 0.9998 2.7069 ( 0 21 45) 0 0.9998 0.9998 10 10 ( 2809 1jbe_A) ( 4905 1p5f_A) 0.5000 0.3571 2.8462 ( 0 4 10) 0 0.8979 0.6425 10 14 ( 2809 1jbe_A) ( 4916 1p6u_A) 0.8999 0.8999 2.4916 ( 0 16 36) 0 0.8999 0.8999 10 10 ( 2809 1jbe_A) ( 4926 1p80_A) 0.5601 0.5108 2.6921 ( 2 12 28) 0 0.6235 0.5473 10 13 ( 2809 1jbe_A) ( 5096 1psd_A) 0.8987 0.9977 4.9420 ( 0 5 36) 0 0.8987 0.9977 10 9 ( 2809 1jbe_A) ( 5234 1q7r_A) 0.8785 0.4988 3.3023 ( 1 16 36) 0 0.8986 0.4999 10 18 ( 2809 1jbe_A) ( 5289 1qcz_A) 0.8996 0.8996 3.7195 ( 0 12 36) 0 0.8996 0.8996 10 10 ( 2809 1jbe_A) ( 5297 1qdl_B) 0.8998 0.5294 3.0643 ( 0 13 36) 0 0.8998 0.5294 10 17 ( 2809 1jbe_A) ( 5364 1qkk_A) 0.9972 0.9972 5.2230 ( 0 20 45) 0 0.9972 0.9972 10 10 ( 2809 1jbe_A) ( 5397 1qo0_D) 0.8891 0.7455 8.4082 ( 0 18 36) 0 0.8891 0.7455 10 12 ( 2809 1jbe_A) ( 5470 1qvz_A) 0.8817 0.5607 5.1331 ( 1 17 36) 0 0.8817 0.5607 10 16 ( 2809 1jbe_A) ( 5673 1rli_A) 0.8647 0.7351 4.0711 ( 1 14 36) 0 0.8766 0.7403 10 12 ( 2809 1jbe_A) ( 5752 1s2d_A) 0.4999 0.5554 4.7927 ( 0 4 10) 0 0.5988 0.6646 10 9 ( 2809 1jbe_A) ( 5785 1say_A) 0.5995 0.3158 6.3883 ( 0 3 15) 0 0.9712 0.5251 10 19 ( 2809 1jbe_A) ( 5842 1sqs_A) 0.8643 0.6357 4.6581 ( 1 14 36) 0 0.8887 0.6407 10 14 ( 2809 1jbe_A) ( 5920 1tmy ) 0.9999 0.9999 1.7665 ( 0 22 45) 0 0.9999 0.9999 10 10 ( 2809 1jbe_A) ( 6242 1vhq_A) 0.8720 0.6373 4.8111 ( 1 15 36) 0 0.8985 0.6737 10 14 ( 2809 1jbe_A) ( 6258 1vi6_A) 0.5000 0.3846 3.1873 ( 0 4 10) 0 0.6629 0.5276 10 13 ( 2809 1jbe_A) ( 6283 1vjg_A) 0.8950 0.7480 6.8969 ( 0 15 36) 0 0.8950 0.7480 10 12 ( 2809 1jbe_A) ( 6496 2nac_A) 0.9547 0.7561 4.4474 ( 1 15 45) 0 0.9547 0.7561 10 13 ( 2809 1jbe_A) ( 6624 5nul ) 0.7996 0.7996 4.1763 ( 0 12 28) 0 0.8973 0.8973 10 10 ( 2809 1jbe_A) ( 6640 7req_A) 0.9998 0.8333 2.6896 ( 0 23 45) 0 0.9998 0.8333 10 12 ( 2809 1jbe_A) ( 6642 7req_B) 0.9813 0.7641 3.1599 ( 1 19 45) 0 0.9813 0.7641 10 13 -------------------------------------------------------------------------------------------------------------------------