------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3073 1jvn_A) ( 6 1a04_A) 0.4733 0.8122 3.8925 ( 1 20 36) 0 0.4733 0.8122 19 11 ( 3073 1jvn_A) ( 26 1a2o_A) 0.4737 0.8992 4.2914 ( 0 20 36) 0 0.4737 0.8992 19 10 ( 3073 1jvn_A) ( 90 1a9x_B) 0.2632 0.2778 5.1357 ( 0 4 10) 0 0.5005 0.5045 19 18 ( 3073 1jvn_A) ( 256 1b00_A) 0.4733 0.8907 5.3984 ( 1 21 36) 0 0.4733 0.8907 19 10 ( 3073 1jvn_A) ( 266 1b1c_A) 0.4665 0.7321 6.1677 ( 2 19 36) 0 0.5004 0.7321 19 11 ( 3073 1jvn_A) ( 428 1bmt_A) 0.2631 0.4543 7.6888 ( 0 4 10) 0 0.4308 0.6360 19 11 ( 3073 1jvn_A) ( 477 1bvy_F) 0.4210 0.8881 4.3925 ( 0 14 28) 0 0.4210 0.8881 19 9 ( 3073 1jvn_A) ( 523 1c4k_A) 0.4111 0.6992 6.3422 ( 2 15 28) 0 0.4111 0.8717 19 8 ( 3073 1jvn_A) ( 562 1ccw_A) 0.4149 0.6921 3.5263 ( 2 17 28) 0 0.4149 0.6994 19 10 ( 3073 1jvn_A) ( 745 1d4a_A) 0.4202 0.5305 3.9629 ( 1 14 28) 0 0.4685 0.5780 19 15 ( 3073 1jvn_A) ( 786 1dbw_A) 0.4736 0.8988 4.8360 ( 0 19 36) 0 0.4736 0.8988 19 10 ( 3073 1jvn_A) ( 793 1dcf_A) 0.4689 0.8074 4.4300 ( 2 21 36) 0 0.4689 0.8074 19 10 ( 3073 1jvn_A) ( 971 1dxy ) 0.3564 0.5562 3.1788 ( 2 12 21) 0 0.4210 0.8884 19 9 ( 3073 1jvn_A) ( 980 1dz3_A) 0.4210 0.7997 3.9433 ( 0 15 28) 0 0.4210 0.7997 19 10 ( 3073 1jvn_A) ( 1042 1e5d_A) 0.4601 0.7079 5.8259 ( 2 16 36) 0 0.4601 0.7996 19 10 ( 3073 1jvn_A) ( 1177 1eiw_A) 0.4734 0.9883 5.3406 ( 1 23 36) 0 0.4734 0.9883 19 9 ( 3073 1jvn_A) ( 1252 1es9_A) 0.2631 0.4165 7.6547 ( 0 4 10) 0 0.4726 0.7391 19 12 ( 3073 1jvn_A) ( 1253 1esc ) 0.2105 0.2353 2.9455 ( 0 5 6) 0 0.5133 0.5663 19 17 ( 3073 1jvn_A) ( 1266 1euc_B) 0.3988 0.5289 3.6993 ( 2 12 28) 0 0.3988 0.5832 19 12 ( 3073 1jvn_A) ( 1379 1f2v_A) 0.2631 0.3125 6.5395 ( 0 4 10) 0 0.5256 0.6233 19 16 ( 3073 1jvn_A) ( 1397 1f4p_A) 0.4288 0.5528 5.1097 ( 3 17 36) 0 0.4288 0.8876 19 9 ( 3073 1jvn_A) ( 1443 1f8y_A) 0.4133 0.6382 5.4481 ( 2 16 28) 0 0.4133 0.6382 19 11 ( 3073 1jvn_A) ( 1516 1fjg_B) 0.2105 0.3333 5.7540 ( 0 0 6) 0 0.3911 0.5478 19 12 ( 3073 1jvn_A) ( 1547 1flc_A) 0.2105 0.2222 6.0873 ( 0 4 6) 0 0.4425 0.4605 19 18 ( 3073 1jvn_A) ( 1659 1fye_A) 0.2830 0.2926 5.9920 ( 3 11 15) 0 0.7316 0.7710 19 18 ( 3073 1jvn_A) ( 1662 1fyx_A) 0.3803 0.4825 4.7433 ( 4 20 28) 0 0.3803 0.6991 19 10 ( 3073 1jvn_A) ( 1700 1g2i_A) 0.5612 0.6486 4.7545 ( 6 43 66) 0 0.5612 0.7064 19 14 ( 3073 1jvn_A) ( 1803 1gdh_A) 0.4195 0.7644 4.4071 ( 1 12 28) 0 0.4649 0.7644 19 10 ( 3073 1jvn_A) ( 1901 1gpm_A) 0.3756 0.3799 3.9545 ( 13 50 78) 0 0.4867 0.5107 19 16 ( 3073 1jvn_A) ( 2027 1h05_A) 0.2632 0.4545 5.5635 ( 0 0 10) 0 0.4629 0.7004 19 11 ( 3073 1jvn_A) ( 2427 1i7q_B) 0.6525 0.6736 3.5868 ( 7 58 91) 0 0.6525 0.6736 19 18 ( 3073 1jvn_A) ( 2470 1iex_A) 0.2631 0.4165 7.0701 ( 0 5 10) 0 0.5252 0.8223 19 12 ( 3073 1jvn_A) ( 2714 1j2y_A) 0.4210 0.7263 5.9721 ( 0 14 28) 0 0.4309 0.7263 19 11 ( 3073 1jvn_A) ( 2729 1j4a_A) 0.4210 0.7995 4.5248 ( 0 17 28) 0 0.4729 0.8809 19 10 ( 3073 1jvn_A) ( 2809 1jbe_A) 0.4679 0.7926 4.9893 ( 2 20 36) 0 0.4736 0.8977 19 10 ( 3073 1jvn_A) ( 3034 1jrl_A) 0.2105 0.4000 5.5130 ( 0 1 6) 0 0.4564 0.7641 19 10 ( 3073 1jvn_A) ( 3073 1jvn_A) 1.0000 1.0000 0.0000 ( 0 122 171) 0 1.0000 1.0000 19 19 ( 3073 1jvn_A) ( 3189 1k66_A) 0.4697 0.7650 4.3310 ( 2 22 36) 0 0.4734 0.8136 19 11 ( 3073 1jvn_A) ( 3190 1k68_A) 0.4629 0.7338 4.8743 ( 2 17 36) 0 0.4736 0.8990 19 10 ( 3073 1jvn_A) ( 3199 1k7c_A) 0.2632 0.3333 3.7844 ( 0 3 10) 0 0.4245 0.5322 19 15 ( 3073 1jvn_A) ( 3234 1k9v_F) 0.8929 0.9420 2.5256 ( 3 90 136) 0 0.8929 0.9420 19 18 ( 3073 1jvn_A) ( 3238 1ka9_H) 0.7400 0.8353 2.8644 ( 7 75 105) 0 0.7400 0.8353 19 16 ( 3073 1jvn_A) ( 3295 1kgs_A) 0.4210 0.7994 4.7427 ( 0 13 28) 0 0.4451 0.7994 19 10 ( 3073 1jvn_A) ( 3412 1krw_A) 0.4210 0.7998 3.5780 ( 0 13 28) 0 0.4600 0.7998 19 10 ( 3073 1jvn_A) ( 3462 1kwg_A) 0.6702 0.7809 4.5405 ( 3 38 78) 0 0.6702 0.7809 19 16 ( 3073 1jvn_A) ( 3560 1l7d_A) 0.2632 0.2941 3.9098 ( 0 8 10) 0 0.5722 0.6355 19 17 ( 3073 1jvn_A) ( 3581 1l9x_A) 0.7486 0.6353 4.1236 ( 6 68 105) 0 0.7486 0.6353 19 23 ( 3073 1jvn_A) ( 3632 1li4_A) 0.3519 0.3678 5.3649 ( 2 11 21) 0 0.4516 0.4718 19 18 ( 3073 1jvn_A) ( 3801 1m2e_A) 0.4210 0.8870 5.4997 ( 0 15 28) 0 0.4210 0.8870 19 9 ( 3073 1jvn_A) ( 3896 1mb3_A) 0.4732 0.8885 3.9498 ( 1 19 36) 0 0.4732 0.8885 19 10 ( 3073 1jvn_A) ( 4066 1mx3_A) 0.3684 0.6363 3.8517 ( 0 8 21) 0 0.4628 0.7002 19 11 ( 3073 1jvn_A) ( 4130 1n57_A) 0.5263 0.5555 3.8974 ( 0 29 45) 0 0.5539 0.5791 19 18 ( 3073 1jvn_A) ( 4185 1nat ) 0.4725 0.8722 4.5379 ( 1 15 36) 0 0.4725 0.8722 19 10 ( 3073 1jvn_A) ( 4323 1nni_1) 0.4910 0.6489 5.0530 ( 4 28 45) 0 0.4910 0.7643 19 11 ( 3073 1jvn_A) ( 4433 1ny5_A) 0.4734 0.8928 7.5687 ( 0 15 36) 0 0.4734 0.8928 19 10 ( 3073 1jvn_A) ( 4474 1o1y_A) 0.4027 0.4027 3.4141 ( 3 19 28) 0 0.6189 0.6189 19 19 ( 3073 1jvn_A) ( 4590 1obo_A) 0.4043 0.5934 6.0997 ( 2 13 28) 0 0.4210 0.7991 19 10 ( 3073 1jvn_A) ( 4669 1oi7_A) 0.4210 0.7269 4.5351 ( 0 13 28) 0 0.5119 0.8161 19 11 ( 3073 1jvn_A) ( 4787 1ou0_A) 0.2583 0.2859 7.0822 ( 1 5 10) 0 0.5196 0.5767 19 17 ( 3073 1jvn_A) ( 4813 1oxb_B) 0.4550 0.6692 4.2147 ( 3 22 36) 0 0.4550 0.7997 19 10 ( 3073 1jvn_A) ( 4871 1p2f_A) 0.4629 0.7339 4.6101 ( 2 17 36) 0 0.4725 0.8720 19 10 ( 3073 1jvn_A) ( 4905 1p5f_A) 0.5541 0.6932 3.0795 ( 4 35 55) 0 0.5541 0.6932 19 14 ( 3073 1jvn_A) ( 4916 1p6u_A) 0.4708 0.8394 4.8130 ( 2 24 36) 0 0.4708 0.8394 19 10 ( 3073 1jvn_A) ( 4926 1p80_A) 0.4875 0.6036 2.9264 ( 5 34 45) 0 0.4875 0.6036 19 13 ( 3073 1jvn_A) ( 5096 1psd_A) 0.2632 0.5554 5.2090 ( 0 3 10) 0 0.4210 0.8875 19 9 ( 3073 1jvn_A) ( 5234 1q7r_A) 0.8220 0.8629 4.1109 ( 5 75 120) 0 0.8220 0.8629 19 18 ( 3073 1jvn_A) ( 5289 1qcz_A) 0.4210 0.7991 5.1243 ( 0 15 28) 0 0.4649 0.7991 19 10 ( 3073 1jvn_A) ( 5297 1qdl_B) 0.6385 0.6756 3.1952 ( 7 55 91) 0 0.6385 0.6756 19 17 ( 3073 1jvn_A) ( 5364 1qkk_A) 0.4733 0.8902 8.1805 ( 0 18 36) 0 0.4733 0.8902 19 10 ( 3073 1jvn_A) ( 5397 1qo0_D) 0.4638 0.6721 10.8977 ( 2 18 36) 0 0.4717 0.7314 19 12 ( 3073 1jvn_A) ( 5470 1qvz_A) 0.5541 0.6341 3.2347 ( 4 35 55) 0 0.5787 0.6868 19 16 ( 3073 1jvn_A) ( 5673 1rli_A) 0.5119 0.7256 4.9970 ( 3 27 45) 0 0.5119 0.7452 19 12 ( 3073 1jvn_A) ( 5752 1s2d_A) 0.3673 0.7353 4.4907 ( 1 11 21) 0 0.4209 0.8816 19 9 ( 3073 1jvn_A) ( 5785 1say_A) 0.2632 0.2632 4.0117 ( 0 7 10) 0 0.5786 0.5786 19 19 ( 3073 1jvn_A) ( 5842 1sqs_A) 0.4724 0.6369 6.4106 ( 1 15 36) 0 0.5257 0.7114 19 14 ( 3073 1jvn_A) ( 5920 1tmy ) 0.4737 0.8993 4.2043 ( 0 20 36) 0 0.4737 0.8993 19 10 ( 3073 1jvn_A) ( 6242 1vhq_A) 0.5789 0.7853 4.2502 ( 0 34 55) 0 0.5789 0.7853 19 14 ( 3073 1jvn_A) ( 6258 1vi6_A) 0.2632 0.3846 4.4645 ( 0 5 10) 0 0.4736 0.6920 19 13 ( 3073 1jvn_A) ( 6283 1vjg_A) 0.2632 0.4166 5.0936 ( 0 2 10) 0 0.4210 0.6660 19 12 ( 3073 1jvn_A) ( 6496 2nac_A) 0.2632 0.3846 6.2189 ( 0 5 10) 0 0.4149 0.5791 19 13 ( 3073 1jvn_A) ( 6624 5nul ) 0.4210 0.7993 4.9154 ( 0 13 28) 0 0.4735 0.8963 19 10 ( 3073 1jvn_A) ( 6640 7req_A) 0.4210 0.6664 4.8695 ( 0 16 28) 0 0.4516 0.6664 19 12 ( 3073 1jvn_A) ( 6642 7req_B) 0.4309 0.5216 4.3770 ( 4 23 36) 0 0.5176 0.7182 19 13 -------------------------------------------------------------------------------------------------------------------------