------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3238 1ka9_H) ( 6 1a04_A) 0.5000 0.7271 4.0652 ( 0 16 28) 0 0.5000 0.7271 16 11 ( 3238 1ka9_H) ( 26 1a2o_A) 0.5624 0.8988 4.8372 ( 0 21 36) 0 0.5624 0.8988 16 10 ( 3238 1ka9_H) ( 90 1a9x_B) 0.6341 0.6102 3.6178 ( 8 55 91) 0 0.6341 0.6102 16 18 ( 3238 1ka9_H) ( 256 1b00_A) 0.4988 0.7878 3.6789 ( 1 16 28) 0 0.4999 0.7986 16 10 ( 3238 1ka9_H) ( 266 1b1c_A) 0.5601 0.8033 5.7683 ( 1 16 36) 0 0.5601 0.8033 16 11 ( 3238 1ka9_H) ( 428 1bmt_A) 0.5514 0.7560 4.5565 ( 2 21 36) 0 0.5514 0.7560 16 11 ( 3238 1ka9_H) ( 477 1bvy_F) 0.5000 0.8882 4.2070 ( 0 18 28) 0 0.5000 0.8882 16 9 ( 3238 1ka9_H) ( 523 1c4k_A) 0.4373 0.8699 7.1627 ( 0 10 21) 0 0.4373 0.8699 16 8 ( 3238 1ka9_H) ( 562 1ccw_A) 0.4375 0.6999 3.2579 ( 0 12 21) 0 0.4375 0.6999 16 10 ( 3238 1ka9_H) ( 745 1d4a_A) 0.4979 0.5305 4.4556 ( 1 14 28) 0 0.4999 0.5332 16 15 ( 3238 1ka9_H) ( 786 1dbw_A) 0.5623 0.8980 5.4627 ( 0 19 36) 0 0.5623 0.8980 16 10 ( 3238 1ka9_H) ( 793 1dcf_A) 0.4999 0.7992 5.0314 ( 0 16 28) 0 0.4999 0.7992 16 10 ( 3238 1ka9_H) ( 971 1dxy ) 0.3750 0.6662 5.4988 ( 0 8 15) 0 0.4375 0.7775 16 9 ( 3238 1ka9_H) ( 980 1dz3_A) 0.4999 0.7994 4.6666 ( 0 15 28) 0 0.4999 0.7994 16 10 ( 3238 1ka9_H) ( 1042 1e5d_A) 0.5000 0.7995 4.4099 ( 0 10 28) 0 0.5000 0.7996 16 10 ( 3238 1ka9_H) ( 1177 1eiw_A) 0.4992 0.8756 4.0263 ( 1 18 28) 0 0.4992 0.8756 16 9 ( 3238 1ka9_H) ( 1252 1es9_A) 0.5624 0.7495 4.9242 ( 0 20 36) 0 0.5624 0.7495 16 12 ( 3238 1ka9_H) ( 1253 1esc ) 0.4051 0.3940 6.8656 ( 3 14 28) 0 0.5000 0.4706 16 17 ( 3238 1ka9_H) ( 1266 1euc_B) 0.4531 0.5289 3.8726 ( 2 12 28) 0 0.5415 0.6116 16 12 ( 3238 1ka9_H) ( 1379 1f2v_A) 0.3125 0.3125 4.4962 ( 0 6 10) 0 0.6387 0.6387 16 16 ( 3238 1ka9_H) ( 1397 1f4p_A) 0.5623 0.9959 5.7408 ( 0 17 36) 0 0.5623 0.9959 16 9 ( 3238 1ka9_H) ( 1443 1f8y_A) 0.4333 0.5005 4.4840 ( 3 16 28) 0 0.4908 0.6752 16 11 ( 3238 1ka9_H) ( 1516 1fjg_B) 0.2500 0.3333 3.6367 ( 0 2 6) 0 0.4348 0.5723 16 12 ( 3238 1ka9_H) ( 1547 1flc_A) 0.2500 0.2222 4.9526 ( 0 3 6) 0 0.5602 0.4987 16 18 ( 3238 1ka9_H) ( 1659 1fye_A) 0.2500 0.2222 6.4924 ( 0 0 6) 0 0.8003 0.7153 16 18 ( 3238 1ka9_H) ( 1662 1fyx_A) 0.4719 0.6237 4.0465 ( 3 21 28) 0 0.4719 0.6237 16 10 ( 3238 1ka9_H) ( 1700 1g2i_A) 0.5621 0.6421 2.8582 ( 1 25 36) 0 0.5623 0.6425 16 14 ( 3238 1ka9_H) ( 1803 1gdh_A) 0.4999 0.7992 5.0583 ( 0 12 28) 0 0.4999 0.7994 16 10 ( 3238 1ka9_H) ( 1901 1gpm_A) 0.7148 0.7148 3.5879 ( 7 58 91) 0 0.7148 0.7148 16 16 ( 3238 1ka9_H) ( 2027 1h05_A) 0.3967 0.4349 3.1080 ( 2 9 28) 0 0.5382 0.7002 16 11 ( 3238 1ka9_H) ( 2427 1i7q_B) 0.7059 0.6753 2.9892 ( 9 70 105) 0 0.7059 0.6753 16 18 ( 3238 1ka9_H) ( 2470 1iex_A) 0.4999 0.6663 5.2698 ( 0 13 28) 0 0.5623 0.7490 16 12 ( 3238 1ka9_H) ( 2714 1j2y_A) 0.4204 0.4754 4.3977 ( 3 15 28) 0 0.5529 0.7635 16 11 ( 3238 1ka9_H) ( 2729 1j4a_A) 0.4999 0.7992 5.0787 ( 0 17 28) 0 0.4999 0.7992 16 10 ( 3238 1ka9_H) ( 2809 1jbe_A) 0.4999 0.7988 5.5218 ( 0 14 28) 0 0.5621 0.8959 16 10 ( 3238 1ka9_H) ( 3034 1jrl_A) 0.4375 0.6996 4.9828 ( 0 10 21) 0 0.4999 0.7994 16 10 ( 3238 1ka9_H) ( 3073 1jvn_A) 0.8353 0.7400 2.8644 ( 7 75 105) 0 0.8353 0.7400 16 19 ( 3238 1ka9_H) ( 3189 1k66_A) 0.5532 0.7649 4.6611 ( 2 22 36) 0 0.5532 0.7649 16 11 ( 3238 1ka9_H) ( 3190 1k68_A) 0.4719 0.6237 2.5757 ( 2 14 28) 0 0.5383 0.7995 16 10 ( 3238 1ka9_H) ( 3199 1k7c_A) 0.3125 0.3333 4.0775 ( 0 5 10) 0 0.5277 0.5539 16 15 ( 3238 1ka9_H) ( 3234 1k9v_F) 0.8722 0.7947 2.8163 ( 6 74 105) 0 0.8722 0.7947 16 18 ( 3238 1ka9_H) ( 3238 1ka9_H) 1.0000 1.0000 0.0000 ( 0 90 120) 0 1.0000 1.0000 16 16 ( 3238 1ka9_H) ( 3295 1kgs_A) 0.4999 0.7987 5.6599 ( 0 13 28) 0 0.4999 0.7987 16 10 ( 3238 1ka9_H) ( 3412 1krw_A) 0.5000 0.7997 4.0675 ( 0 13 28) 0 0.5000 0.7997 16 10 ( 3238 1ka9_H) ( 3462 1kwg_A) 0.7532 0.7532 4.3924 ( 5 46 91) 0 0.7532 0.7532 16 16 ( 3238 1ka9_H) ( 3560 1l7d_A) 0.3125 0.2941 6.8541 ( 0 3 10) 0 0.5612 0.5285 16 17 ( 3238 1ka9_H) ( 3581 1l9x_A) 0.7960 0.6210 4.0781 ( 7 67 105) 0 0.7960 0.6210 16 23 ( 3238 1ka9_H) ( 3632 1li4_A) 0.3125 0.2778 4.5975 ( 0 5 10) 0 0.5048 0.4768 16 18 ( 3238 1ka9_H) ( 3801 1m2e_A) 0.4998 0.8860 6.1064 ( 0 16 28) 0 0.4998 0.8860 16 9 ( 3238 1ka9_H) ( 3896 1mb3_A) 0.4999 0.7994 4.5937 ( 0 14 28) 0 0.4999 0.7994 16 10 ( 3238 1ka9_H) ( 4066 1mx3_A) 0.3750 0.5453 5.3787 ( 0 8 15) 0 0.5220 0.7269 16 11 ( 3238 1ka9_H) ( 4130 1n57_A) 0.6203 0.5529 4.3442 ( 2 30 45) 0 0.6203 0.5529 16 18 ( 3238 1ka9_H) ( 4185 1nat ) 0.4963 0.7647 2.8586 ( 1 12 28) 0 0.4963 0.7647 16 10 ( 3238 1ka9_H) ( 4323 1nni_1) 0.5525 0.6488 5.7070 ( 4 28 45) 0 0.5532 0.7648 16 11 ( 3238 1ka9_H) ( 4433 1ny5_A) 0.4946 0.7505 6.5637 ( 1 11 28) 0 0.4993 0.7931 16 10 ( 3238 1ka9_H) ( 4474 1o1y_A) 0.6697 0.6324 3.6931 ( 9 65 105) 0 0.6697 0.6324 16 19 ( 3238 1ka9_H) ( 4590 1obo_A) 0.4375 0.6997 4.8296 ( 0 13 21) 0 0.4999 0.7988 16 10 ( 3238 1ka9_H) ( 4669 1oi7_A) 0.4531 0.5455 3.9148 ( 2 12 28) 0 0.4531 0.5455 16 11 ( 3238 1ka9_H) ( 4787 1ou0_A) 0.2500 0.2353 3.5380 ( 0 2 6) 0 0.6247 0.5880 16 17 ( 3238 1ka9_H) ( 4813 1oxb_B) 0.4999 0.7993 4.8101 ( 0 15 28) 0 0.5221 0.7993 16 10 ( 3238 1ka9_H) ( 4871 1p2f_A) 0.4963 0.7647 3.0441 ( 1 12 28) 0 0.5613 0.8873 16 10 ( 3238 1ka9_H) ( 4905 1p5f_A) 0.5530 0.5799 3.7905 ( 6 38 55) 0 0.6697 0.7525 16 14 ( 3238 1ka9_H) ( 4916 1p6u_A) 0.5618 0.8933 5.1487 ( 1 23 36) 0 0.5618 0.8933 16 10 ( 3238 1ka9_H) ( 4926 1p80_A) 0.5820 0.6682 3.0202 ( 4 33 45) 0 0.5820 0.6904 16 13 ( 3238 1ka9_H) ( 5096 1psd_A) 0.3750 0.6661 5.8124 ( 0 5 15) 0 0.4375 0.7773 16 9 ( 3238 1ka9_H) ( 5234 1q7r_A) 0.7960 0.7437 4.1147 ( 7 67 105) 0 0.7960 0.7437 16 18 ( 3238 1ka9_H) ( 5289 1qcz_A) 0.4204 0.4825 3.8348 ( 3 15 28) 0 0.5381 0.7644 16 10 ( 3238 1ka9_H) ( 5297 1qdl_B) 0.6424 0.6302 3.3200 ( 8 56 91) 0 0.6424 0.6302 16 17 ( 3238 1ka9_H) ( 5364 1qkk_A) 0.5424 0.7544 7.1110 ( 2 18 36) 0 0.5424 0.7921 16 10 ( 3238 1ka9_H) ( 5397 1qo0_D) 0.4707 0.5707 10.7275 ( 2 14 28) 0 0.5437 0.6823 16 12 ( 3238 1ka9_H) ( 5470 1qvz_A) 0.5443 0.5443 3.8938 ( 6 37 55) 0 0.5547 0.5547 16 16 ( 3238 1ka9_H) ( 5673 1rli_A) 0.5525 0.6323 5.7369 ( 4 28 45) 0 0.5525 0.7073 16 12 ( 3238 1ka9_H) ( 5752 1s2d_A) 0.4348 0.7352 4.4944 ( 1 11 21) 0 0.4348 0.7353 16 9 ( 3238 1ka9_H) ( 5785 1say_A) 0.3722 0.3146 5.5967 ( 1 9 15) 0 0.6092 0.5194 16 19 ( 3238 1ka9_H) ( 5842 1sqs_A) 0.4962 0.5642 4.7321 ( 1 12 28) 0 0.4962 0.5642 16 14 ( 3238 1ka9_H) ( 5920 1tmy ) 0.5077 0.6241 3.8618 ( 3 20 36) 0 0.5077 0.7992 16 10 ( 3238 1ka9_H) ( 6242 1vhq_A) 0.6197 0.7040 3.7029 ( 2 29 45) 0 0.6197 0.7040 16 14 ( 3238 1ka9_H) ( 6258 1vi6_A) 0.3125 0.3846 3.2621 ( 0 5 10) 0 0.5588 0.6821 16 13 ( 3238 1ka9_H) ( 6283 1vjg_A) 0.3750 0.4998 5.9713 ( 0 6 15) 0 0.4997 0.6656 16 12 ( 3238 1ka9_H) ( 6496 2nac_A) 0.3125 0.3845 7.3370 ( 0 5 10) 0 0.5700 0.6451 16 13 ( 3238 1ka9_H) ( 6624 5nul ) 0.5000 0.7996 4.3329 ( 0 13 28) 0 0.5587 0.8638 16 10 ( 3238 1ka9_H) ( 6640 7req_A) 0.4999 0.6661 5.8901 ( 0 17 28) 0 0.4999 0.6661 16 12 ( 3238 1ka9_H) ( 6642 7req_B) 0.4257 0.5076 4.1906 ( 2 15 21) 0 0.4375 0.5384 16 13 -------------------------------------------------------------------------------------------------------------------------