------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3462 1kwg_A) ( 6 1a04_A) 0.5603 0.8045 3.8074 ( 1 16 36) 0 0.5603 0.8045 16 11 ( 3462 1kwg_A) ( 26 1a2o_A) 0.5604 0.8786 3.0913 ( 1 16 36) 0 0.5604 0.8786 16 10 ( 3462 1kwg_A) ( 90 1a9x_B) 0.9107 0.8181 4.5684 ( 4 64 105) 0 0.9107 0.8181 16 18 ( 3462 1kwg_A) ( 256 1b00_A) 0.5625 0.8996 3.6436 ( 0 16 36) 0 0.5625 0.8996 16 10 ( 3462 1kwg_A) ( 266 1b1c_A) 0.5586 0.7944 5.9775 ( 1 14 36) 0 0.5586 0.7944 16 11 ( 3462 1kwg_A) ( 428 1bmt_A) 0.5625 0.8179 3.8085 ( 0 15 36) 0 0.5625 0.8179 16 11 ( 3462 1kwg_A) ( 477 1bvy_F) 0.5464 0.8179 4.5762 ( 2 19 36) 0 0.5464 0.8179 16 9 ( 3462 1kwg_A) ( 523 1c4k_A) 0.4825 0.7339 4.4821 ( 1 8 28) 0 0.4825 0.8733 16 8 ( 3462 1kwg_A) ( 562 1ccw_A) 0.4963 0.7644 4.3948 ( 1 12 28) 0 0.4963 0.7644 16 10 ( 3462 1kwg_A) ( 745 1d4a_A) 0.4998 0.5331 6.3880 ( 0 10 28) 0 0.5601 0.5967 16 15 ( 3462 1kwg_A) ( 786 1dbw_A) 0.5597 0.8728 3.3129 ( 1 15 36) 0 0.5603 0.8782 16 10 ( 3462 1kwg_A) ( 793 1dcf_A) 0.5603 0.8785 3.4771 ( 1 16 36) 0 0.5603 0.8785 16 10 ( 3462 1kwg_A) ( 971 1dxy ) 0.4531 0.5723 3.5498 ( 2 12 28) 0 0.5000 0.8883 16 9 ( 3462 1kwg_A) ( 980 1dz3_A) 0.4963 0.7646 3.5858 ( 1 12 28) 0 0.4999 0.7992 16 10 ( 3462 1kwg_A) ( 1042 1e5d_A) 0.5623 0.8981 5.3896 ( 0 12 36) 0 0.5623 0.8982 16 10 ( 3462 1kwg_A) ( 1177 1eiw_A) 0.5625 0.9995 3.3967 ( 0 17 36) 0 0.5625 0.9995 16 9 ( 3462 1kwg_A) ( 1252 1es9_A) 0.5558 0.7233 5.2384 ( 1 12 36) 0 0.5558 0.7233 16 12 ( 3462 1kwg_A) ( 1253 1esc ) 0.5462 0.5172 5.9523 ( 2 19 36) 0 0.5614 0.5388 16 17 ( 3462 1kwg_A) ( 1266 1euc_B) 0.5625 0.7498 3.7070 ( 0 12 36) 0 0.5625 0.7498 16 12 ( 3462 1kwg_A) ( 1379 1f2v_A) 0.3125 0.3125 7.0142 ( 0 0 10) 0 0.6234 0.6234 16 16 ( 3462 1kwg_A) ( 1397 1f4p_A) 0.5624 0.9978 4.9124 ( 0 14 36) 0 0.5624 0.9978 16 9 ( 3462 1kwg_A) ( 1443 1f8y_A) 0.4719 0.5995 3.7907 ( 1 7 28) 0 0.4719 0.5995 16 11 ( 3462 1kwg_A) ( 1516 1fjg_B) 0.2887 0.3430 6.1451 ( 1 4 10) 0 0.4375 0.5831 16 12 ( 3462 1kwg_A) ( 1547 1flc_A) 0.2500 0.2222 4.0424 ( 0 2 6) 0 0.5596 0.4984 16 18 ( 3462 1kwg_A) ( 1659 1fye_A) 0.4998 0.4444 6.1197 ( 0 14 28) 0 0.4998 0.4832 16 18 ( 3462 1kwg_A) ( 1662 1fyx_A) 0.4375 0.6999 3.3350 ( 0 10 21) 0 0.4973 0.7735 16 10 ( 3462 1kwg_A) ( 1700 1g2i_A) 0.6155 0.6963 3.5078 ( 2 25 45) 0 0.6155 0.6963 16 14 ( 3462 1kwg_A) ( 1803 1gdh_A) 0.4531 0.5601 4.4427 ( 2 12 28) 0 0.4924 0.7335 16 10 ( 3462 1kwg_A) ( 1901 1gpm_A) 0.7390 0.7390 3.9223 ( 6 53 91) 0 0.7390 0.7390 16 16 ( 3462 1kwg_A) ( 2027 1h05_A) 0.4235 0.4551 3.5739 ( 3 14 36) 0 0.5624 0.8175 16 11 ( 3462 1kwg_A) ( 2427 1i7q_B) 0.7039 0.6737 4.7847 ( 8 62 105) 0 0.7039 0.6737 16 18 ( 3462 1kwg_A) ( 2470 1iex_A) 0.3125 0.4167 4.1162 ( 0 2 10) 0 0.6031 0.7550 16 12 ( 3462 1kwg_A) ( 2714 1j2y_A) 0.4130 0.4402 3.5615 ( 4 18 36) 0 0.5031 0.5974 16 11 ( 3462 1kwg_A) ( 2729 1j4a_A) 0.4599 0.5180 4.2294 ( 3 16 36) 0 0.4979 0.7794 16 10 ( 3462 1kwg_A) ( 2809 1jbe_A) 0.5625 0.8997 3.2804 ( 0 14 36) 0 0.5625 0.8997 16 10 ( 3462 1kwg_A) ( 3034 1jrl_A) 0.4947 0.7513 5.4811 ( 1 11 28) 0 0.4999 0.7985 16 10 ( 3462 1kwg_A) ( 3073 1jvn_A) 0.7809 0.6702 4.5405 ( 3 38 78) 0 0.7809 0.6702 16 19 ( 3462 1kwg_A) ( 3189 1k66_A) 0.5625 0.8181 2.7120 ( 0 14 36) 0 0.5625 0.8181 16 11 ( 3462 1kwg_A) ( 3190 1k68_A) 0.5625 0.8999 2.5938 ( 0 14 36) 0 0.5625 0.8999 16 10 ( 3462 1kwg_A) ( 3199 1k7c_A) 0.4972 0.5295 4.8222 ( 1 13 28) 0 0.5585 0.5945 16 15 ( 3462 1kwg_A) ( 3234 1k9v_F) 0.7248 0.6810 3.3613 ( 6 51 91) 0 0.7248 0.6810 16 18 ( 3462 1kwg_A) ( 3238 1ka9_H) 0.7532 0.7532 4.3924 ( 5 46 91) 0 0.7532 0.7532 16 16 ( 3462 1kwg_A) ( 3295 1kgs_A) 0.4925 0.7342 2.8092 ( 1 10 28) 0 0.5032 0.7342 16 10 ( 3462 1kwg_A) ( 3412 1krw_A) 0.5625 0.8995 3.8300 ( 0 13 36) 0 0.5625 0.8995 16 10 ( 3462 1kwg_A) ( 3462 1kwg_A) 1.0000 1.0000 0.0000 ( 0 80 120) 0 1.0000 1.0000 16 16 ( 3462 1kwg_A) ( 3560 1l7d_A) 0.3125 0.2941 3.9043 ( 0 6 10) 0 0.6530 0.6209 16 17 ( 3462 1kwg_A) ( 3581 1l9x_A) 0.7794 0.5594 4.3658 ( 4 50 78) 0 0.7794 0.5594 16 23 ( 3462 1kwg_A) ( 3632 1li4_A) 0.3125 0.2778 4.1216 ( 0 4 10) 0 0.5558 0.4963 16 18 ( 3462 1kwg_A) ( 3801 1m2e_A) 0.4963 0.8319 3.8873 ( 1 12 28) 0 0.4963 0.8319 16 9 ( 3462 1kwg_A) ( 3896 1mb3_A) 0.5625 0.8998 3.1478 ( 0 14 36) 0 0.5625 0.8998 16 10 ( 3462 1kwg_A) ( 4066 1mx3_A) 0.4235 0.4550 5.1628 ( 3 14 36) 0 0.4887 0.6651 16 11 ( 3462 1kwg_A) ( 4130 1n57_A) 0.6250 0.5555 3.3282 ( 0 23 45) 0 0.6250 0.5555 16 18 ( 3462 1kwg_A) ( 4185 1nat ) 0.5625 0.8998 3.0537 ( 0 13 36) 0 0.5625 0.8998 16 10 ( 3462 1kwg_A) ( 4323 1nni_1) 0.5000 0.7270 4.1240 ( 0 10 28) 0 0.5588 0.7956 16 11 ( 3462 1kwg_A) ( 4433 1ny5_A) 0.5623 0.8980 5.4356 ( 0 12 36) 0 0.5623 0.8980 16 10 ( 3462 1kwg_A) ( 4474 1o1y_A) 0.7169 0.6538 4.3419 ( 6 50 91) 0 0.7169 0.6538 16 19 ( 3462 1kwg_A) ( 4590 1obo_A) 0.5607 0.8815 5.3153 ( 1 17 36) 0 0.5607 0.8815 16 10 ( 3462 1kwg_A) ( 4669 1oi7_A) 0.5000 0.7272 3.0716 ( 0 10 28) 0 0.5000 0.7272 16 11 ( 3462 1kwg_A) ( 4787 1ou0_A) 0.2500 0.2353 3.6926 ( 0 4 6) 0 0.6249 0.5882 16 17 ( 3462 1kwg_A) ( 4813 1oxb_B) 0.5597 0.8727 3.4094 ( 1 15 36) 0 0.5603 0.8780 16 10 ( 3462 1kwg_A) ( 4871 1p2f_A) 0.5625 0.8997 3.3473 ( 0 14 36) 0 0.5625 0.8997 16 10 ( 3462 1kwg_A) ( 4905 1p5f_A) 0.6243 0.7130 3.2823 ( 1 25 45) 0 0.6788 0.7691 16 14 ( 3462 1kwg_A) ( 4916 1p6u_A) 0.4963 0.7645 4.0628 ( 1 12 28) 0 0.5000 0.7996 16 10 ( 3462 1kwg_A) ( 4926 1p80_A) 0.5614 0.6892 2.8865 ( 1 19 36) 0 0.5614 0.6892 16 13 ( 3462 1kwg_A) ( 5096 1psd_A) 0.2500 0.4444 5.6384 ( 0 4 6) 0 0.4369 0.7677 16 9 ( 3462 1kwg_A) ( 5234 1q7r_A) 0.3125 0.2778 4.7763 ( 0 4 10) 0 0.6770 0.6447 16 18 ( 3462 1kwg_A) ( 5289 1qcz_A) 0.4948 0.7520 3.3630 ( 1 11 28) 0 0.5558 0.8393 16 10 ( 3462 1kwg_A) ( 5297 1qdl_B) 0.8655 0.8271 4.2506 ( 5 60 105) 0 0.8655 0.8271 16 17 ( 3462 1kwg_A) ( 5364 1qkk_A) 0.5623 0.8974 5.8232 ( 0 14 36) 0 0.5623 0.8974 16 10 ( 3462 1kwg_A) ( 5397 1qo0_D) 0.5588 0.7350 9.2931 ( 1 16 36) 0 0.5588 0.7350 16 12 ( 3462 1kwg_A) ( 5470 1qvz_A) 0.6250 0.6250 3.3193 ( 0 23 45) 0 0.6867 0.6867 16 16 ( 3462 1kwg_A) ( 5673 1rli_A) 0.5623 0.7493 5.2272 ( 0 16 36) 0 0.5623 0.7493 16 12 ( 3462 1kwg_A) ( 5752 1s2d_A) 0.3967 0.4429 4.4469 ( 2 9 28) 0 0.4638 0.6102 16 9 ( 3462 1kwg_A) ( 5785 1say_A) 0.3125 0.2632 3.0909 ( 0 5 10) 0 0.6250 0.5493 16 19 ( 3462 1kwg_A) ( 5842 1sqs_A) 0.3619 0.4045 4.4324 ( 1 6 15) 0 0.5558 0.6300 16 14 ( 3462 1kwg_A) ( 5920 1tmy ) 0.5625 0.8998 2.9999 ( 0 15 36) 0 0.5625 0.8998 16 10 ( 3462 1kwg_A) ( 6242 1vhq_A) 0.6249 0.7142 3.4343 ( 0 26 45) 0 0.6816 0.7743 16 14 ( 3462 1kwg_A) ( 6258 1vi6_A) 0.2500 0.3077 4.0921 ( 0 1 6) 0 0.4963 0.6051 16 13 ( 3462 1kwg_A) ( 6283 1vjg_A) 0.4999 0.6662 5.5301 ( 0 11 28) 0 0.4999 0.6664 16 12 ( 3462 1kwg_A) ( 6496 2nac_A) 0.3125 0.3846 4.3092 ( 0 2 10) 0 0.6093 0.7281 16 13 ( 3462 1kwg_A) ( 6624 5nul ) 0.5624 0.8986 4.9979 ( 0 14 36) 0 0.5624 0.8986 16 10 ( 3462 1kwg_A) ( 6640 7req_A) 0.5603 0.7410 3.8362 ( 1 16 36) 0 0.5603 0.7410 16 12 ( 3462 1kwg_A) ( 6642 7req_B) 0.5576 0.6790 3.5846 ( 1 13 36) 0 0.5576 0.6790 16 13 -------------------------------------------------------------------------------------------------------------------------