------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3560 1l7d_A) ( 6 1a04_A) 0.5293 0.8169 5.4713 ( 0 14 36) 0 0.5877 0.9043 17 11 ( 3560 1l7d_A) ( 26 1a2o_A) 0.5272 0.8709 5.7406 ( 1 15 36) 0 0.5875 0.9891 17 10 ( 3560 1l7d_A) ( 90 1a9x_B) 0.2941 0.2778 4.4816 ( 0 5 10) 0 0.5874 0.5550 17 18 ( 3560 1l7d_A) ( 256 1b00_A) 0.4117 0.6997 4.7395 ( 0 9 21) 0 0.5293 0.8986 17 10 ( 3560 1l7d_A) ( 266 1b1c_A) 0.5243 0.7774 6.3308 ( 1 12 36) 0 0.5291 0.8155 17 11 ( 3560 1l7d_A) ( 428 1bmt_A) 0.4705 0.7269 4.7091 ( 0 12 28) 0 0.5878 0.9049 17 11 ( 3560 1l7d_A) ( 477 1bvy_F) 0.4705 0.8870 5.4931 ( 0 9 28) 0 0.4705 0.8879 17 9 ( 3560 1l7d_A) ( 523 1c4k_A) 0.3529 0.7487 6.1594 ( 0 8 15) 0 0.4113 0.8575 17 8 ( 3560 1l7d_A) ( 562 1ccw_A) 0.4705 0.7987 5.6921 ( 0 9 28) 0 0.5256 0.8525 17 10 ( 3560 1l7d_A) ( 745 1d4a_A) 0.5871 0.6645 6.2537 ( 1 22 45) 0 0.5871 0.6645 17 15 ( 3560 1l7d_A) ( 786 1dbw_A) 0.4706 0.7997 4.0146 ( 0 11 28) 0 0.5294 0.8992 17 10 ( 3560 1l7d_A) ( 793 1dcf_A) 0.5277 0.8772 5.3302 ( 1 16 36) 0 0.5871 0.9848 17 10 ( 3560 1l7d_A) ( 971 1dxy ) 0.4686 0.8459 3.1661 ( 1 13 28) 0 0.5294 0.9991 17 9 ( 3560 1l7d_A) ( 980 1dz3_A) 0.4706 0.7997 3.8652 ( 0 10 28) 0 0.5293 0.8986 17 10 ( 3560 1l7d_A) ( 1042 1e5d_A) 0.5291 0.8955 6.7164 ( 0 13 36) 0 0.5291 0.8958 17 10 ( 3560 1l7d_A) ( 1177 1eiw_A) 0.4402 0.5976 6.2759 ( 3 19 28) 0 0.4492 0.6452 17 9 ( 3560 1l7d_A) ( 1252 1es9_A) 0.3151 0.3283 8.2240 ( 3 10 28) 0 0.6403 0.8806 17 12 ( 3560 1l7d_A) ( 1253 1esc ) 0.2928 0.2928 7.2797 ( 1 8 10) 0 0.5286 0.5286 17 17 ( 3560 1l7d_A) ( 1266 1euc_B) 0.2941 0.4167 4.1774 ( 0 4 10) 0 0.6468 0.9152 17 12 ( 3560 1l7d_A) ( 1379 1f2v_A) 0.2353 0.2500 3.9201 ( 0 2 6) 0 0.6874 0.7254 17 16 ( 3560 1l7d_A) ( 1397 1f4p_A) 0.4705 0.8865 5.8056 ( 0 9 28) 0 0.5293 0.9963 17 9 ( 3560 1l7d_A) ( 1443 1f8y_A) 0.4428 0.5742 6.3243 ( 2 13 28) 0 0.4428 0.6011 17 11 ( 3560 1l7d_A) ( 1516 1fjg_B) 0.3605 0.4170 6.9816 ( 2 9 21) 0 0.4002 0.5284 17 12 ( 3560 1l7d_A) ( 1547 1flc_A) 0.2941 0.2778 4.9735 ( 0 3 10) 0 0.4868 0.4667 17 18 ( 3560 1l7d_A) ( 1659 1fye_A) 0.2941 0.2778 5.1701 ( 0 7 10) 0 0.5640 0.5449 17 18 ( 3560 1l7d_A) ( 1662 1fyx_A) 0.3339 0.4531 4.0027 ( 1 5 15) 0 0.4179 0.6996 17 10 ( 3560 1l7d_A) ( 1700 1g2i_A) 0.2941 0.3571 6.1510 ( 0 5 10) 0 0.4595 0.5035 17 14 ( 3560 1l7d_A) ( 1803 1gdh_A) 0.4932 0.6475 3.0236 ( 2 14 36) 0 0.5294 0.8994 17 10 ( 3560 1l7d_A) ( 1901 1gpm_A) 0.2941 0.3125 7.2466 ( 0 3 10) 0 0.5293 0.5623 17 16 ( 3560 1l7d_A) ( 2027 1h05_A) 0.3529 0.5454 4.2500 ( 0 5 15) 0 0.5867 0.8960 17 11 ( 3560 1l7d_A) ( 2427 1i7q_B) 0.2941 0.2778 3.0855 ( 0 4 10) 0 0.5562 0.5309 17 18 ( 3560 1l7d_A) ( 2470 1iex_A) 0.4117 0.5829 6.4547 ( 0 6 21) 0 0.5853 0.8172 17 12 ( 3560 1l7d_A) ( 2714 1j2y_A) 0.3529 0.5449 7.4041 ( 0 7 15) 0 0.5872 0.9002 17 11 ( 3560 1l7d_A) ( 2729 1j4a_A) 0.5294 0.8996 3.6178 ( 0 15 36) 0 0.5870 0.9833 17 10 ( 3560 1l7d_A) ( 2809 1jbe_A) 0.5272 0.8710 5.6976 ( 1 15 36) 0 0.5293 0.8989 17 10 ( 3560 1l7d_A) ( 3034 1jrl_A) 0.5265 0.8622 6.3717 ( 1 14 36) 0 0.5293 0.8979 17 10 ( 3560 1l7d_A) ( 3073 1jvn_A) 0.2941 0.2632 3.9098 ( 0 8 10) 0 0.6355 0.5722 17 19 ( 3560 1l7d_A) ( 3189 1k66_A) 0.5244 0.7785 4.9181 ( 1 12 36) 0 0.5881 0.9077 17 11 ( 3560 1l7d_A) ( 3190 1k68_A) 0.5244 0.8394 4.7209 ( 1 12 36) 0 0.5881 0.9978 17 10 ( 3560 1l7d_A) ( 3199 1k7c_A) 0.5292 0.5996 5.8855 ( 0 23 36) 0 0.5293 0.5998 17 15 ( 3560 1l7d_A) ( 3234 1k9v_F) 0.2941 0.2778 6.1483 ( 0 3 10) 0 0.5798 0.5492 17 18 ( 3560 1l7d_A) ( 3238 1ka9_H) 0.2941 0.3125 6.8541 ( 0 3 10) 0 0.5285 0.5612 17 16 ( 3560 1l7d_A) ( 3295 1kgs_A) 0.4705 0.7991 5.1660 ( 0 8 28) 0 0.5293 0.8986 17 10 ( 3560 1l7d_A) ( 3412 1krw_A) 0.4833 0.6120 3.8916 ( 2 13 36) 0 0.5864 0.9755 17 10 ( 3560 1l7d_A) ( 3462 1kwg_A) 0.2941 0.3125 3.9043 ( 0 6 10) 0 0.6209 0.6530 17 16 ( 3560 1l7d_A) ( 3560 1l7d_A) 1.0000 1.0000 0.0000 ( 0 110 136) 0 1.0000 1.0000 17 17 ( 3560 1l7d_A) ( 3581 1l9x_A) 0.2859 0.2155 6.9407 ( 1 5 10) 0 0.5399 0.4658 17 23 ( 3560 1l7d_A) ( 3632 1li4_A) 0.5294 0.5000 3.3768 ( 0 13 36) 0 0.6240 0.5935 17 18 ( 3560 1l7d_A) ( 3801 1m2e_A) 0.4074 0.6961 3.6988 ( 1 9 21) 0 0.5292 0.9943 17 9 ( 3560 1l7d_A) ( 3896 1mb3_A) 0.5293 0.8986 5.0174 ( 0 14 36) 0 0.5881 0.9977 17 10 ( 3560 1l7d_A) ( 4066 1mx3_A) 0.3728 0.3945 2.8509 ( 3 12 36) 0 0.5293 0.8170 17 11 ( 3560 1l7d_A) ( 4130 1n57_A) 0.2859 0.2715 4.2803 ( 1 5 10) 0 0.4771 0.4647 17 18 ( 3560 1l7d_A) ( 4185 1nat ) 0.5294 0.8992 4.4004 ( 0 11 36) 0 0.5881 0.9982 17 10 ( 3560 1l7d_A) ( 4323 1nni_1) 0.4621 0.6649 5.9566 ( 1 9 28) 0 0.4930 0.7142 17 11 ( 3560 1l7d_A) ( 4433 1ny5_A) 0.5286 0.8889 8.4521 ( 0 10 36) 0 0.5871 0.9843 17 10 ( 3560 1l7d_A) ( 4474 1o1y_A) 0.2497 0.2343 3.3877 ( 2 6 10) 0 0.5460 0.5005 17 19 ( 3560 1l7d_A) ( 4590 1obo_A) 0.5292 0.8972 5.9356 ( 0 15 36) 0 0.5292 0.8972 17 10 ( 3560 1l7d_A) ( 4669 1oi7_A) 0.2941 0.4545 2.9088 ( 0 3 10) 0 0.4649 0.6829 17 11 ( 3560 1l7d_A) ( 4787 1ou0_A) 0.2353 0.2353 4.1893 ( 0 1 6) 0 0.6177 0.6177 17 17 ( 3560 1l7d_A) ( 4813 1oxb_B) 0.5277 0.8770 5.4961 ( 1 16 36) 0 0.5880 0.9970 17 10 ( 3560 1l7d_A) ( 4871 1p2f_A) 0.5266 0.8639 5.1788 ( 1 14 36) 0 0.5880 0.9972 17 10 ( 3560 1l7d_A) ( 4905 1p5f_A) 0.3529 0.4286 3.2508 ( 0 5 15) 0 0.5293 0.6427 17 14 ( 3560 1l7d_A) ( 4916 1p6u_A) 0.3529 0.6000 2.9985 ( 0 5 15) 0 0.5293 0.8980 17 10 ( 3560 1l7d_A) ( 4926 1p80_A) 0.3529 0.4615 3.2608 ( 0 7 15) 0 0.5193 0.6569 17 13 ( 3560 1l7d_A) ( 5096 1psd_A) 0.4706 0.8887 3.0518 ( 0 4 28) 0 0.4706 0.8887 17 9 ( 3560 1l7d_A) ( 5234 1q7r_A) 0.2941 0.2778 3.6583 ( 0 4 10) 0 0.5783 0.5480 17 18 ( 3560 1l7d_A) ( 5289 1qcz_A) 0.4704 0.7976 6.6039 ( 0 8 28) 0 0.4705 0.7992 17 10 ( 3560 1l7d_A) ( 5297 1qdl_B) 0.3528 0.3528 8.9849 ( 0 8 15) 0 0.5871 0.5871 17 17 ( 3560 1l7d_A) ( 5364 1qkk_A) 0.5248 0.8434 9.0335 ( 1 13 36) 0 0.5867 0.9795 17 10 ( 3560 1l7d_A) ( 5397 1qo0_D) 0.4684 0.6545 12.6158 ( 0 14 28) 0 0.5740 0.7641 17 12 ( 3560 1l7d_A) ( 5470 1qvz_A) 0.2941 0.3125 4.1712 ( 0 3 10) 0 0.4048 0.4282 17 16 ( 3560 1l7d_A) ( 5673 1rli_A) 0.5293 0.7492 5.4652 ( 0 14 36) 0 0.5876 0.8297 17 12 ( 3560 1l7d_A) ( 5752 1s2d_A) 0.3151 0.3465 5.5940 ( 2 7 21) 0 0.3896 0.6664 17 9 ( 3560 1l7d_A) ( 5785 1say_A) 0.8220 0.7527 2.5953 ( 6 70 105) 0 0.8486 0.7695 17 19 ( 3560 1l7d_A) ( 5842 1sqs_A) 0.5257 0.6333 5.2939 ( 1 13 36) 0 0.5869 0.7108 17 14 ( 3560 1l7d_A) ( 5920 1tmy ) 0.5266 0.8640 5.0680 ( 1 14 36) 0 0.5881 0.9977 17 10 ( 3560 1l7d_A) ( 6242 1vhq_A) 0.2941 0.3571 4.0445 ( 0 5 10) 0 0.5873 0.7118 17 14 ( 3560 1l7d_A) ( 6258 1vi6_A) 0.2941 0.3846 3.7282 ( 0 3 10) 0 0.4706 0.6153 17 13 ( 3560 1l7d_A) ( 6283 1vjg_A) 0.3529 0.4999 4.5537 ( 0 5 15) 0 0.5798 0.7896 17 12 ( 3560 1l7d_A) ( 6496 2nac_A) 0.4346 0.4505 3.5729 ( 5 23 55) 0 0.5551 0.6198 17 13 ( 3560 1l7d_A) ( 6624 5nul ) 0.5265 0.8629 5.9868 ( 1 14 36) 0 0.5293 0.8983 17 10 ( 3560 1l7d_A) ( 6640 7req_A) 0.5292 0.7488 6.0260 ( 0 17 36) 0 0.5873 0.8283 17 12 ( 3560 1l7d_A) ( 6642 7req_B) 0.3529 0.4614 6.3052 ( 0 9 15) 0 0.5873 0.7657 17 13 -------------------------------------------------------------------------------------------------------------------------