------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3632 1li4_A) ( 6 1a04_A) 0.5549 0.9015 4.6739 ( 1 22 45) 0 0.5555 0.9081 18 11 ( 3632 1li4_A) ( 26 1a2o_A) 0.5555 0.9988 4.2476 ( 0 23 45) 0 0.5555 0.9988 18 10 ( 3632 1li4_A) ( 90 1a9x_B) 0.2778 0.2778 3.0520 ( 0 0 10) 0 0.5588 0.5588 18 18 ( 3632 1li4_A) ( 256 1b00_A) 0.5548 0.9854 4.9734 ( 1 21 45) 0 0.5551 0.9914 18 10 ( 3632 1li4_A) ( 266 1b1c_A) 0.4646 0.5326 6.8007 ( 4 22 45) 0 0.5551 0.9041 18 11 ( 3632 1li4_A) ( 428 1bmt_A) 0.5550 0.9021 5.0779 ( 1 23 45) 0 0.5550 0.9021 18 11 ( 3632 1li4_A) ( 477 1bvy_F) 0.4531 0.5819 4.7852 ( 3 18 36) 0 0.4984 0.9536 18 9 ( 3632 1li4_A) ( 523 1c4k_A) 0.3333 0.7490 5.7926 ( 0 5 15) 0 0.3889 0.8729 18 8 ( 3632 1li4_A) ( 562 1ccw_A) 0.4993 0.8871 5.4828 ( 1 19 36) 0 0.4999 0.8974 18 10 ( 3632 1li4_A) ( 745 1d4a_A) 0.4992 0.5980 4.8970 ( 1 18 36) 0 0.4996 0.5989 18 15 ( 3632 1li4_A) ( 786 1dbw_A) 0.5546 0.9831 4.7774 ( 1 20 45) 0 0.5554 0.9964 18 10 ( 3632 1li4_A) ( 793 1dcf_A) 0.5549 0.9883 4.3538 ( 1 22 45) 0 0.5549 0.9883 18 10 ( 3632 1li4_A) ( 971 1dxy ) 0.4860 0.7650 3.9172 ( 2 17 36) 0 0.5000 0.9990 18 9 ( 3632 1li4_A) ( 980 1dz3_A) 0.4991 0.8829 3.4598 ( 1 17 36) 0 0.5000 0.8995 18 10 ( 3632 1li4_A) ( 1042 1e5d_A) 0.5449 0.8578 6.3109 ( 2 21 45) 0 0.5543 0.9772 18 10 ( 3632 1li4_A) ( 1177 1eiw_A) 0.4606 0.6099 5.2051 ( 3 19 36) 0 0.4606 0.8126 18 9 ( 3632 1li4_A) ( 1252 1es9_A) 0.3887 0.5818 8.7980 ( 0 9 21) 0 0.6540 0.9187 18 12 ( 3632 1li4_A) ( 1253 1esc ) 0.4997 0.5291 6.9016 ( 0 17 36) 0 0.5548 0.5872 18 17 ( 3632 1li4_A) ( 1266 1euc_B) 0.3333 0.5000 3.9399 ( 0 5 15) 0 0.6089 0.9008 18 12 ( 3632 1li4_A) ( 1379 1f2v_A) 0.3333 0.3750 3.0784 ( 0 6 15) 0 0.6104 0.6863 18 16 ( 3632 1li4_A) ( 1397 1f4p_A) 0.4860 0.7646 5.0542 ( 2 17 36) 0 0.4999 0.9977 18 9 ( 3632 1li4_A) ( 1443 1f8y_A) 0.3334 0.3610 4.7974 ( 3 11 28) 0 0.4279 0.6361 18 11 ( 3632 1li4_A) ( 1516 1fjg_B) 0.2778 0.4166 4.9845 ( 0 2 10) 0 0.4900 0.6862 18 12 ( 3632 1li4_A) ( 1547 1flc_A) 0.4444 0.4444 4.0230 ( 0 10 28) 0 0.4444 0.4444 18 18 ( 3632 1li4_A) ( 1659 1fye_A) 0.3333 0.3333 4.6716 ( 0 7 15) 0 0.6105 0.6105 18 18 ( 3632 1li4_A) ( 1662 1fyx_A) 0.3937 0.4825 4.8286 ( 3 15 28) 0 0.4441 0.7729 18 10 ( 3632 1li4_A) ( 1700 1g2i_A) 0.5015 0.5458 4.3470 ( 6 35 55) 0 0.5981 0.6826 18 14 ( 3632 1li4_A) ( 1803 1gdh_A) 0.5539 0.9708 4.4378 ( 1 17 45) 0 0.5551 0.9908 18 10 ( 3632 1li4_A) ( 1901 1gpm_A) 0.3333 0.3749 8.0928 ( 0 4 15) 0 0.4443 0.4997 18 16 ( 3632 1li4_A) ( 2027 1h05_A) 0.3333 0.5454 4.8420 ( 0 9 15) 0 0.5403 0.8177 18 11 ( 3632 1li4_A) ( 2427 1i7q_B) 0.2869 0.2869 5.5072 ( 2 7 15) 0 0.5719 0.5719 18 18 ( 3632 1li4_A) ( 2470 1iex_A) 0.3333 0.4999 4.9555 ( 0 7 15) 0 0.4983 0.7377 18 12 ( 3632 1li4_A) ( 2714 1j2y_A) 0.5480 0.8353 5.9108 ( 2 23 45) 0 0.5535 0.8866 18 11 ( 3632 1li4_A) ( 2729 1j4a_A) 0.5227 0.7117 3.8587 ( 3 23 45) 0 0.5545 0.9805 18 10 ( 3632 1li4_A) ( 2809 1jbe_A) 0.5542 0.9756 4.9011 ( 1 18 45) 0 0.5542 0.9756 18 10 ( 3632 1li4_A) ( 3034 1jrl_A) 0.4999 0.8990 4.6388 ( 0 12 36) 0 0.4999 0.8990 18 10 ( 3632 1li4_A) ( 3073 1jvn_A) 0.3678 0.3519 5.3649 ( 2 11 21) 0 0.4718 0.4516 18 19 ( 3632 1li4_A) ( 3189 1k66_A) 0.6048 0.9358 3.6934 ( 2 27 55) 0 0.6048 0.9358 18 11 ( 3632 1li4_A) ( 3190 1k68_A) 0.5555 0.9995 3.4145 ( 0 17 45) 0 0.5555 0.9995 18 10 ( 3632 1li4_A) ( 3199 1k7c_A) 0.5000 0.5999 3.6591 ( 0 16 36) 0 0.5555 0.6665 18 15 ( 3632 1li4_A) ( 3234 1k9v_F) 0.3333 0.3333 4.9699 ( 0 7 15) 0 0.4690 0.4690 18 18 ( 3632 1li4_A) ( 3238 1ka9_H) 0.2778 0.3125 4.5975 ( 0 5 10) 0 0.4768 0.5048 18 16 ( 3632 1li4_A) ( 3295 1kgs_A) 0.4963 0.8397 4.3042 ( 1 12 36) 0 0.4999 0.8988 18 10 ( 3632 1li4_A) ( 3412 1krw_A) 0.5555 0.9989 4.1459 ( 0 16 45) 0 0.5555 0.9989 18 10 ( 3632 1li4_A) ( 3462 1kwg_A) 0.2778 0.3125 4.1216 ( 0 4 10) 0 0.4963 0.5558 18 16 ( 3632 1li4_A) ( 3560 1l7d_A) 0.5000 0.5294 3.3768 ( 0 13 36) 0 0.5935 0.6240 18 17 ( 3632 1li4_A) ( 3581 1l9x_A) 0.2768 0.2171 4.4070 ( 1 8 10) 0 0.6089 0.5227 18 23 ( 3632 1li4_A) ( 3632 1li4_A) 1.0000 1.0000 0.0000 ( 0 117 153) 0 1.0000 1.0000 18 18 ( 3632 1li4_A) ( 3801 1m2e_A) 0.4999 0.9955 5.8868 ( 0 16 36) 0 0.4999 0.9955 18 9 ( 3632 1li4_A) ( 3896 1mb3_A) 0.5549 0.9884 4.2617 ( 1 22 45) 0 0.5555 0.9989 18 10 ( 3632 1li4_A) ( 4066 1mx3_A) 0.4719 0.6287 4.3499 ( 2 14 36) 0 0.5322 0.8171 18 11 ( 3632 1li4_A) ( 4130 1n57_A) 0.2778 0.2778 3.8663 ( 0 6 10) 0 0.4606 0.4606 18 18 ( 3632 1li4_A) ( 4185 1nat ) 0.5555 0.9991 3.9441 ( 0 16 45) 0 0.5555 0.9991 18 10 ( 3632 1li4_A) ( 4323 1nni_1) 0.5677 0.7333 5.8496 ( 4 32 55) 0 0.5677 0.8983 18 11 ( 3632 1li4_A) ( 4433 1ny5_A) 0.5549 0.9886 7.4421 ( 0 16 45) 0 0.5549 0.9886 18 10 ( 3632 1li4_A) ( 4474 1o1y_A) 0.2778 0.2632 6.3256 ( 0 4 10) 0 0.4987 0.4727 18 19 ( 3632 1li4_A) ( 4590 1obo_A) 0.5500 0.9140 6.2559 ( 2 25 45) 0 0.5500 0.9140 18 10 ( 3632 1li4_A) ( 4669 1oi7_A) 0.3333 0.5454 3.2859 ( 0 5 15) 0 0.5677 0.7333 18 11 ( 3632 1li4_A) ( 4787 1ou0_A) 0.3186 0.3339 3.2370 ( 1 5 15) 0 0.3769 0.3810 18 17 ( 3632 1li4_A) ( 4813 1oxb_B) 0.5227 0.7115 4.7142 ( 3 23 45) 0 0.5370 0.8982 18 10 ( 3632 1li4_A) ( 4871 1p2f_A) 0.5539 0.9711 4.2191 ( 1 17 45) 0 0.5542 0.9752 18 10 ( 3632 1li4_A) ( 4905 1p5f_A) 0.3889 0.5000 4.0930 ( 0 13 21) 0 0.6105 0.7837 18 14 ( 3632 1li4_A) ( 4916 1p6u_A) 0.5227 0.7115 4.5799 ( 3 23 45) 0 0.5549 0.9882 18 10 ( 3632 1li4_A) ( 4926 1p80_A) 0.4719 0.5852 4.7588 ( 3 21 36) 0 0.4990 0.6871 18 13 ( 3632 1li4_A) ( 5096 1psd_A) 0.4444 0.8883 4.1268 ( 0 6 28) 0 0.5000 0.9984 18 9 ( 3632 1li4_A) ( 5234 1q7r_A) 0.3326 0.3326 5.2855 ( 1 11 15) 0 0.6043 0.6043 18 18 ( 3632 1li4_A) ( 5289 1qcz_A) 0.4987 0.8775 5.0783 ( 1 16 36) 0 0.4999 0.8984 18 10 ( 3632 1li4_A) ( 5297 1qdl_B) 0.2778 0.2941 3.2734 ( 0 0 10) 0 0.4444 0.4705 18 17 ( 3632 1li4_A) ( 5364 1qkk_A) 0.5548 0.9853 7.9491 ( 0 18 45) 0 0.5548 0.9853 18 10 ( 3632 1li4_A) ( 5397 1qo0_D) 0.4969 0.7279 11.3079 ( 1 16 36) 0 0.5516 0.8051 18 12 ( 3632 1li4_A) ( 5470 1qvz_A) 0.4948 0.5532 3.5358 ( 2 22 36) 0 0.4948 0.5532 18 16 ( 3632 1li4_A) ( 5673 1rli_A) 0.5109 0.6324 5.3901 ( 4 28 45) 0 0.6630 0.9737 18 12 ( 3632 1li4_A) ( 5752 1s2d_A) 0.3258 0.5288 5.4086 ( 1 6 15) 0 0.4443 0.8838 18 9 ( 3632 1li4_A) ( 5785 1say_A) 0.5272 0.5042 3.9163 ( 2 16 45) 0 0.5779 0.5529 18 19 ( 3632 1li4_A) ( 5842 1sqs_A) 0.5109 0.5942 5.5151 ( 3 21 45) 0 0.5766 0.6929 18 14 ( 3632 1li4_A) ( 5920 1tmy ) 0.5555 0.9987 4.2805 ( 0 20 45) 0 0.5555 0.9989 18 10 ( 3632 1li4_A) ( 6242 1vhq_A) 0.3333 0.4286 2.9271 ( 0 8 15) 0 0.4995 0.6413 18 14 ( 3632 1li4_A) ( 6258 1vi6_A) 0.2778 0.3846 2.9925 ( 0 3 10) 0 0.4444 0.6153 18 13 ( 3632 1li4_A) ( 6283 1vjg_A) 0.4999 0.7491 5.6312 ( 0 15 36) 0 0.5428 0.7540 18 12 ( 3632 1li4_A) ( 6496 2nac_A) 0.3769 0.3930 4.2683 ( 5 20 45) 0 0.4406 0.4859 18 13 ( 3632 1li4_A) ( 6624 5nul ) 0.4825 0.7081 5.1823 ( 2 16 36) 0 0.5033 0.8987 18 10 ( 3632 1li4_A) ( 6640 7req_A) 0.6657 0.9929 6.1686 ( 1 35 66) 0 0.6657 0.9929 18 12 ( 3632 1li4_A) ( 6642 7req_B) 0.5546 0.7644 6.1445 ( 1 21 45) 0 0.6102 0.8416 18 13 -------------------------------------------------------------------------------------------------------------------------