------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3896 1mb3_A) ( 6 1a04_A) 0.9999 0.9091 1.8778 ( 0 24 45) 0 0.9999 0.9091 10 11 ( 3896 1mb3_A) ( 26 1a2o_A) 0.9999 0.9999 2.3566 ( 0 25 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 90 1a9x_B) 0.8999 0.5000 2.7988 ( 0 16 36) 0 0.8999 0.5000 10 18 ( 3896 1mb3_A) ( 256 1b00_A) 0.9996 0.9996 3.1589 ( 0 24 45) 0 0.9996 0.9996 10 10 ( 3896 1mb3_A) ( 266 1b1c_A) 0.8991 0.8176 4.4436 ( 0 14 36) 0 0.8993 0.8177 10 11 ( 3896 1mb3_A) ( 428 1bmt_A) 0.9997 0.9089 2.8973 ( 0 23 45) 0 0.9997 0.9089 10 11 ( 3896 1mb3_A) ( 477 1bvy_F) 0.7998 0.8885 3.5941 ( 0 13 28) 0 0.7999 0.8887 10 9 ( 3896 1mb3_A) ( 523 1c4k_A) 0.7995 0.9984 4.5480 ( 0 12 28) 0 0.7995 0.9984 10 8 ( 3896 1mb3_A) ( 562 1ccw_A) 0.8998 0.8998 3.1506 ( 0 17 36) 0 0.8998 0.8998 10 10 ( 3896 1mb3_A) ( 745 1d4a_A) 0.8990 0.5999 4.6008 ( 0 18 36) 0 0.9942 0.6659 10 15 ( 3896 1mb3_A) ( 786 1dbw_A) 0.9999 0.9999 2.0671 ( 0 22 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 793 1dcf_A) 0.9999 0.9999 1.7677 ( 0 24 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 971 1dxy ) 0.8545 0.9275 3.0850 ( 1 13 36) 0 0.8545 0.9275 10 9 ( 3896 1mb3_A) ( 980 1dz3_A) 0.9000 0.9000 2.0467 ( 0 19 36) 0 0.9000 0.9000 10 10 ( 3896 1mb3_A) ( 1042 1e5d_A) 0.8404 0.8404 4.2766 ( 2 20 45) 0 0.9907 0.9907 10 10 ( 3896 1mb3_A) ( 1177 1eiw_A) 0.5735 0.5820 3.1017 ( 3 18 36) 0 0.8822 0.9705 10 9 ( 3896 1mb3_A) ( 1252 1es9_A) 0.9849 0.8272 5.1974 ( 1 21 45) 0 0.9963 0.8318 10 12 ( 3896 1mb3_A) ( 1253 1esc ) 0.9902 0.5875 7.1599 ( 0 21 45) 0 0.9902 0.5875 10 17 ( 3896 1mb3_A) ( 1266 1euc_B) 0.9845 0.8270 3.3027 ( 1 20 45) 0 0.9845 0.8270 10 12 ( 3896 1mb3_A) ( 1379 1f2v_A) 0.9991 0.6249 3.8837 ( 0 16 45) 0 0.9991 0.6249 10 16 ( 3896 1mb3_A) ( 1397 1f4p_A) 0.7341 0.7650 4.0207 ( 2 17 36) 0 0.8994 0.9989 10 9 ( 3896 1mb3_A) ( 1443 1f8y_A) 0.6236 0.5849 4.3250 ( 1 8 21) 0 0.6236 0.5849 10 11 ( 3896 1mb3_A) ( 1516 1fjg_B) 0.4000 0.3333 4.5687 ( 0 1 6) 0 0.4992 0.4488 10 12 ( 3896 1mb3_A) ( 1547 1flc_A) 0.7339 0.4402 4.2636 ( 1 10 28) 0 0.7987 0.4444 10 18 ( 3896 1mb3_A) ( 1659 1fye_A) 0.7792 0.4433 5.1265 ( 1 14 28) 0 0.8771 0.5468 10 18 ( 3896 1mb3_A) ( 1662 1fyx_A) 0.7798 0.7798 3.5886 ( 1 14 28) 0 0.7798 0.7798 10 10 ( 3896 1mb3_A) ( 1700 1g2i_A) 0.8855 0.6401 4.5819 ( 1 18 36) 0 0.8861 0.6402 10 14 ( 3896 1mb3_A) ( 1803 1gdh_A) 0.9431 0.9431 3.9971 ( 1 14 45) 0 0.9431 0.9431 10 10 ( 3896 1mb3_A) ( 1901 1gpm_A) 0.8000 0.5000 2.3856 ( 0 13 28) 0 0.8000 0.5000 10 16 ( 3896 1mb3_A) ( 2027 1h05_A) 0.8999 0.8181 2.5899 ( 0 9 36) 0 0.8999 0.8181 10 11 ( 3896 1mb3_A) ( 2427 1i7q_B) 0.7568 0.4887 2.6893 ( 2 18 36) 0 0.7568 0.4887 10 18 ( 3896 1mb3_A) ( 2470 1iex_A) 0.9994 0.8331 3.5263 ( 0 17 45) 0 0.9994 0.8331 10 12 ( 3896 1mb3_A) ( 2714 1j2y_A) 0.8996 0.8180 3.5747 ( 0 13 36) 0 0.8996 0.8180 10 11 ( 3896 1mb3_A) ( 2729 1j4a_A) 0.9993 0.9993 3.7212 ( 0 18 45) 0 0.9993 0.9993 10 10 ( 3896 1mb3_A) ( 2809 1jbe_A) 0.9999 0.9999 1.9279 ( 0 21 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 3034 1jrl_A) 0.8984 0.8984 5.1400 ( 0 13 36) 0 0.8984 0.8984 10 10 ( 3896 1mb3_A) ( 3073 1jvn_A) 0.8885 0.4732 3.9498 ( 1 19 36) 0 0.8885 0.4732 10 19 ( 3896 1mb3_A) ( 3189 1k66_A) 0.9999 0.9090 2.4014 ( 0 19 45) 0 0.9999 0.9090 10 11 ( 3896 1mb3_A) ( 3190 1k68_A) 0.9999 0.9999 2.2416 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 3199 1k7c_A) 0.8992 0.5999 4.4093 ( 0 17 36) 0 0.8992 0.5999 10 15 ( 3896 1mb3_A) ( 3234 1k9v_F) 0.7996 0.4444 4.1348 ( 0 15 28) 0 0.7996 0.4531 10 18 ( 3896 1mb3_A) ( 3238 1ka9_H) 0.7994 0.4999 4.5937 ( 0 14 28) 0 0.7994 0.4999 10 16 ( 3896 1mb3_A) ( 3295 1kgs_A) 0.9000 0.9000 1.8363 ( 0 14 36) 0 0.9000 0.9000 10 10 ( 3896 1mb3_A) ( 3412 1krw_A) 0.9773 0.9773 2.7112 ( 1 18 45) 0 0.9773 0.9773 10 10 ( 3896 1mb3_A) ( 3462 1kwg_A) 0.8998 0.5625 3.1478 ( 0 14 36) 0 0.8998 0.5625 10 16 ( 3896 1mb3_A) ( 3560 1l7d_A) 0.8986 0.5293 5.0174 ( 0 14 36) 0 0.9977 0.5881 10 17 ( 3896 1mb3_A) ( 3581 1l9x_A) 0.8785 0.3910 3.4151 ( 1 16 36) 0 0.8912 0.4325 10 23 ( 3896 1mb3_A) ( 3632 1li4_A) 0.9884 0.5549 4.2617 ( 1 22 45) 0 0.9989 0.5555 10 18 ( 3896 1mb3_A) ( 3801 1m2e_A) 0.8998 0.9996 3.1532 ( 0 19 36) 0 0.8998 0.9996 10 9 ( 3896 1mb3_A) ( 3896 1mb3_A) 1.0000 1.0000 0.0000 ( 0 26 45) 0 1.0000 1.0000 10 10 ( 3896 1mb3_A) ( 4066 1mx3_A) 0.8397 0.7787 4.3475 ( 1 12 36) 0 0.8981 0.8170 10 11 ( 3896 1mb3_A) ( 4130 1n57_A) 0.7340 0.4860 4.3548 ( 2 17 36) 0 0.9801 0.5545 10 18 ( 3896 1mb3_A) ( 4185 1nat ) 0.9999 0.9999 1.6158 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 4323 1nni_1) 0.9914 0.9037 4.2763 ( 1 24 45) 0 0.9914 0.9037 10 11 ( 3896 1mb3_A) ( 4433 1ny5_A) 0.9972 0.9972 5.2201 ( 0 20 45) 0 0.9972 0.9972 10 10 ( 3896 1mb3_A) ( 4474 1o1y_A) 0.5601 0.3988 3.0174 ( 2 12 28) 0 0.5601 0.4288 10 19 ( 3896 1mb3_A) ( 4590 1obo_A) 0.8921 0.8921 4.6501 ( 2 23 45) 0 0.8996 0.8996 10 10 ( 3896 1mb3_A) ( 4669 1oi7_A) 0.8999 0.8181 2.4991 ( 0 15 36) 0 0.8999 0.8181 10 11 ( 3896 1mb3_A) ( 4787 1ou0_A) 0.8996 0.5294 3.6092 ( 0 12 36) 0 0.8996 0.5640 10 17 ( 3896 1mb3_A) ( 4813 1oxb_B) 0.9999 0.9999 1.3701 ( 0 24 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 4871 1p2f_A) 0.9999 0.9999 2.2551 ( 0 20 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 4905 1p5f_A) 0.5000 0.3571 2.4360 ( 0 4 10) 0 0.8920 0.6896 10 14 ( 3896 1mb3_A) ( 4916 1p6u_A) 0.8999 0.8999 2.3989 ( 0 15 36) 0 0.8999 0.8999 10 10 ( 3896 1mb3_A) ( 4926 1p80_A) 0.8859 0.6884 4.0757 ( 1 18 36) 0 0.8859 0.6884 10 13 ( 3896 1mb3_A) ( 5096 1psd_A) 0.8992 0.9986 4.3924 ( 0 6 36) 0 0.8992 0.9986 10 9 ( 3896 1mb3_A) ( 5234 1q7r_A) 0.8988 0.4999 4.7660 ( 0 17 36) 0 0.8988 0.4999 10 18 ( 3896 1mb3_A) ( 5289 1qcz_A) 0.8996 0.8996 3.5791 ( 0 15 36) 0 0.8996 0.8996 10 10 ( 3896 1mb3_A) ( 5297 1qdl_B) 0.8999 0.5294 2.5938 ( 0 15 36) 0 0.8999 0.5294 10 17 ( 3896 1mb3_A) ( 5364 1qkk_A) 0.9953 0.9953 5.9388 ( 0 21 45) 0 0.9953 0.9953 10 10 ( 3896 1mb3_A) ( 5397 1qo0_D) 0.8815 0.7424 9.6477 ( 0 17 36) 0 0.8815 0.7424 10 12 ( 3896 1mb3_A) ( 5470 1qvz_A) 0.8857 0.5611 4.4406 ( 1 18 36) 0 0.8857 0.5611 10 16 ( 3896 1mb3_A) ( 5673 1rli_A) 0.9862 0.8277 4.3735 ( 1 21 45) 0 0.9862 0.8277 10 12 ( 3896 1mb3_A) ( 5752 1s2d_A) 0.5000 0.5555 3.7814 ( 0 5 10) 0 0.5000 0.5555 10 9 ( 3896 1mb3_A) ( 5785 1say_A) 0.5820 0.4685 3.6672 ( 3 18 45) 0 0.8997 0.5166 10 19 ( 3896 1mb3_A) ( 5842 1sqs_A) 0.9688 0.7081 7.1580 ( 1 18 45) 0 0.9688 0.7081 10 14 ( 3896 1mb3_A) ( 5920 1tmy ) 0.9999 0.9999 1.1454 ( 0 24 45) 0 0.9999 0.9999 10 10 ( 3896 1mb3_A) ( 6242 1vhq_A) 0.7647 0.5643 2.9108 ( 1 12 28) 0 0.8849 0.6400 10 14 ( 3896 1mb3_A) ( 6258 1vi6_A) 0.6999 0.5384 3.8267 ( 0 8 21) 0 0.7083 0.5856 10 13 ( 3896 1mb3_A) ( 6283 1vjg_A) 0.8979 0.7492 5.5139 ( 0 13 36) 0 0.8979 0.7492 10 12 ( 3896 1mb3_A) ( 6496 2nac_A) 0.9551 0.7562 4.0597 ( 1 15 45) 0 0.9742 0.7620 10 13 ( 3896 1mb3_A) ( 6624 5nul ) 0.7340 0.7340 4.1372 ( 2 17 36) 0 0.8993 0.8993 10 10 ( 3896 1mb3_A) ( 6640 7req_A) 0.9998 0.8333 2.6315 ( 0 24 45) 0 0.9998 0.8333 10 12 ( 3896 1mb3_A) ( 6642 7req_B) 0.9994 0.7691 3.6093 ( 0 20 45) 0 0.9994 0.7691 10 13 -------------------------------------------------------------------------------------------------------------------------