------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4130 1n57_A) ( 6 1a04_A) 0.4945 0.6005 5.1489 ( 3 19 45) 0 0.4945 0.7102 18 11 ( 4130 1n57_A) ( 26 1a2o_A) 0.4050 0.4359 4.7837 ( 5 22 45) 0 0.4647 0.7875 18 10 ( 4130 1n57_A) ( 90 1a9x_B) 0.6074 0.6074 3.6743 ( 2 31 55) 0 0.6074 0.6074 18 18 ( 4130 1n57_A) ( 256 1b00_A) 0.5110 0.6631 4.6331 ( 3 21 45) 0 0.5110 0.7641 18 10 ( 4130 1n57_A) ( 266 1b1c_A) 0.2778 0.4545 4.6696 ( 0 7 10) 0 0.4719 0.7096 18 11 ( 4130 1n57_A) ( 428 1bmt_A) 0.4317 0.6206 4.8048 ( 2 15 28) 0 0.4509 0.6362 18 11 ( 4130 1n57_A) ( 477 1bvy_F) 0.2778 0.5554 5.2604 ( 0 5 10) 0 0.4860 0.8132 18 9 ( 4130 1n57_A) ( 523 1c4k_A) 0.3801 0.6421 5.3072 ( 1 7 21) 0 0.3801 0.6421 18 8 ( 4130 1n57_A) ( 562 1ccw_A) 0.4161 0.5601 4.6328 ( 2 12 28) 0 0.4424 0.7644 18 10 ( 4130 1n57_A) ( 745 1d4a_A) 0.4441 0.4894 5.3370 ( 3 17 36) 0 0.4991 0.5734 18 15 ( 4130 1n57_A) ( 786 1dbw_A) 0.4268 0.4691 4.6527 ( 4 19 45) 0 0.5546 0.9828 18 10 ( 4130 1n57_A) ( 793 1dcf_A) 0.3671 0.3962 3.7752 ( 4 16 36) 0 0.3671 0.5999 18 10 ( 4130 1n57_A) ( 971 1dxy ) 0.4280 0.6450 5.2905 ( 2 14 28) 0 0.4444 0.8880 18 9 ( 4130 1n57_A) ( 980 1dz3_A) 0.3052 0.3228 4.3010 ( 4 13 28) 0 0.4985 0.8742 18 10 ( 4130 1n57_A) ( 1042 1e5d_A) 0.5326 0.7644 5.4523 ( 2 17 45) 0 0.5326 0.8642 18 10 ( 4130 1n57_A) ( 1177 1eiw_A) 0.4437 0.8678 4.8964 ( 1 16 28) 0 0.4907 0.8678 18 9 ( 4130 1n57_A) ( 1252 1es9_A) 0.4204 0.4779 4.9116 ( 3 15 36) 0 0.4840 0.5652 18 12 ( 4130 1n57_A) ( 1253 1esc ) 0.4994 0.5286 5.9599 ( 1 20 36) 0 0.4994 0.5286 18 17 ( 4130 1n57_A) ( 1266 1euc_B) 0.2587 0.2650 4.4889 ( 3 8 28) 0 0.5547 0.8267 18 12 ( 4130 1n57_A) ( 1379 1f2v_A) 0.2778 0.3125 5.2143 ( 0 5 10) 0 0.6025 0.6723 18 16 ( 4130 1n57_A) ( 1397 1f4p_A) 0.4444 0.8884 3.9467 ( 0 12 28) 0 0.4444 0.8884 18 9 ( 4130 1n57_A) ( 1443 1f8y_A) 0.4161 0.5455 4.3517 ( 2 12 28) 0 0.4991 0.8082 18 11 ( 4130 1n57_A) ( 1516 1fjg_B) 0.3889 0.5833 4.0153 ( 0 5 21) 0 0.5515 0.8043 18 12 ( 4130 1n57_A) ( 1547 1flc_A) 0.2222 0.2222 4.6845 ( 0 3 6) 0 0.4935 0.4935 18 18 ( 4130 1n57_A) ( 1659 1fye_A) 0.3318 0.3318 4.4968 ( 1 9 15) 0 0.6107 0.6107 18 18 ( 4130 1n57_A) ( 1662 1fyx_A) 0.2420 0.2910 4.9714 ( 2 6 10) 0 0.4604 0.7081 18 10 ( 4130 1n57_A) ( 1700 1g2i_A) 0.6012 0.7532 2.3024 ( 3 36 55) 0 0.6108 0.7848 18 14 ( 4130 1n57_A) ( 1803 1gdh_A) 0.4415 0.7519 4.2710 ( 1 11 28) 0 0.4778 0.7635 18 10 ( 4130 1n57_A) ( 1901 1gpm_A) 0.5956 0.6606 3.4346 ( 3 32 55) 0 0.5956 0.6606 18 16 ( 4130 1n57_A) ( 2027 1h05_A) 0.2222 0.3636 4.2767 ( 0 3 6) 0 0.4946 0.7268 18 11 ( 4130 1n57_A) ( 2427 1i7q_B) 0.5253 0.5253 3.8461 ( 5 32 55) 0 0.5520 0.5520 18 18 ( 4130 1n57_A) ( 2470 1iex_A) 0.2222 0.3333 4.8739 ( 0 3 6) 0 0.5403 0.7416 18 12 ( 4130 1n57_A) ( 2714 1j2y_A) 0.2778 0.4545 5.3543 ( 0 4 10) 0 0.4648 0.6956 18 11 ( 4130 1n57_A) ( 2729 1j4a_A) 0.4415 0.7517 4.6915 ( 1 11 28) 0 0.4606 0.7996 18 10 ( 4130 1n57_A) ( 2809 1jbe_A) 0.4381 0.7086 3.2708 ( 1 9 28) 0 0.4381 0.7086 18 10 ( 4130 1n57_A) ( 3034 1jrl_A) 0.3671 0.3961 6.3165 ( 3 12 36) 0 0.3836 0.6233 18 10 ( 4130 1n57_A) ( 3073 1jvn_A) 0.5555 0.5263 3.8974 ( 0 29 45) 0 0.5791 0.5539 18 19 ( 4130 1n57_A) ( 3189 1k66_A) 0.4780 0.6562 3.4104 ( 2 15 36) 0 0.5370 0.8006 18 11 ( 4130 1n57_A) ( 3190 1k68_A) 0.4780 0.6796 3.5582 ( 2 15 36) 0 0.5370 0.8632 18 10 ( 4130 1n57_A) ( 3199 1k7c_A) 0.4825 0.5599 5.6460 ( 2 16 36) 0 0.4825 0.5599 18 15 ( 4130 1n57_A) ( 3234 1k9v_F) 0.5553 0.5553 3.4990 ( 1 29 45) 0 0.5553 0.5553 18 18 ( 4130 1n57_A) ( 3238 1ka9_H) 0.5529 0.6203 4.3442 ( 2 30 45) 0 0.5529 0.6203 18 16 ( 4130 1n57_A) ( 3295 1kgs_A) 0.3875 0.4277 3.6546 ( 3 13 36) 0 0.4719 0.7083 18 10 ( 4130 1n57_A) ( 3412 1krw_A) 0.3501 0.3722 4.4523 ( 4 15 36) 0 0.4859 0.7839 18 10 ( 4130 1n57_A) ( 3462 1kwg_A) 0.5555 0.6250 3.3282 ( 0 23 45) 0 0.5555 0.6250 18 16 ( 4130 1n57_A) ( 3560 1l7d_A) 0.2715 0.2859 4.2803 ( 1 5 10) 0 0.4647 0.4771 18 17 ( 4130 1n57_A) ( 3581 1l9x_A) 0.5822 0.4691 4.5925 ( 4 36 55) 0 0.5822 0.4691 18 23 ( 4130 1n57_A) ( 3632 1li4_A) 0.2778 0.2778 3.8663 ( 0 6 10) 0 0.4606 0.4606 18 18 ( 4130 1n57_A) ( 3801 1m2e_A) 0.4067 0.5315 4.1611 ( 2 11 28) 0 0.4433 0.8555 18 9 ( 4130 1n57_A) ( 3896 1mb3_A) 0.4860 0.7340 4.3548 ( 2 17 36) 0 0.4984 0.8724 18 10 ( 4130 1n57_A) ( 4066 1mx3_A) 0.4444 0.7271 3.8797 ( 0 12 28) 0 0.5538 0.8889 18 11 ( 4130 1n57_A) ( 4130 1n57_A) 1.0000 1.0000 0.0000 ( 0 125 153) 0 1.0000 1.0000 18 18 ( 4130 1n57_A) ( 4185 1nat ) 0.5201 0.7000 4.3136 ( 2 15 45) 0 0.5201 0.8540 18 10 ( 4130 1n57_A) ( 4323 1nni_1) 0.5502 0.8538 4.7532 ( 2 25 45) 0 0.5502 0.8538 18 11 ( 4130 1n57_A) ( 4433 1ny5_A) 0.5200 0.6994 6.0084 ( 2 15 45) 0 0.5200 0.6994 18 10 ( 4130 1n57_A) ( 4474 1o1y_A) 0.5109 0.4910 5.0707 ( 4 28 45) 0 0.5109 0.4910 18 19 ( 4130 1n57_A) ( 4590 1obo_A) 0.4988 0.8782 4.1093 ( 1 16 36) 0 0.4988 0.8782 18 10 ( 4130 1n57_A) ( 4669 1oi7_A) 0.4531 0.5630 4.4980 ( 2 12 36) 0 0.4719 0.6362 18 11 ( 4130 1n57_A) ( 4787 1ou0_A) 0.2778 0.2941 4.3115 ( 0 5 10) 0 0.5109 0.5314 18 17 ( 4130 1n57_A) ( 4813 1oxb_B) 0.3501 0.3722 3.7254 ( 4 15 36) 0 0.4825 0.7084 18 10 ( 4130 1n57_A) ( 4871 1p2f_A) 0.4531 0.5734 4.7576 ( 3 18 36) 0 0.4531 0.6726 18 10 ( 4130 1n57_A) ( 4905 1p5f_A) 0.6566 0.8239 2.7958 ( 3 40 66) 0 0.6645 0.8496 18 14 ( 4130 1n57_A) ( 4916 1p6u_A) 0.3085 0.3447 3.6067 ( 2 7 21) 0 0.4381 0.7085 18 10 ( 4130 1n57_A) ( 4926 1p80_A) 0.4998 0.6911 2.3608 ( 1 24 36) 0 0.5532 0.7577 18 13 ( 4130 1n57_A) ( 5096 1psd_A) 0.3333 0.6666 3.2989 ( 0 3 15) 0 0.4280 0.7773 18 9 ( 4130 1n57_A) ( 5234 1q7r_A) 0.6062 0.6062 4.6524 ( 2 29 55) 0 0.6062 0.6062 18 18 ( 4130 1n57_A) ( 5289 1qcz_A) 0.4444 0.7997 3.9938 ( 0 10 28) 0 0.4444 0.7998 18 10 ( 4130 1n57_A) ( 5297 1qdl_B) 0.6063 0.6407 3.4714 ( 2 29 55) 0 0.6063 0.6407 18 17 ( 4130 1n57_A) ( 5364 1qkk_A) 0.4839 0.5815 6.5297 ( 3 18 45) 0 0.4943 0.8147 18 10 ( 4130 1n57_A) ( 5397 1qo0_D) 0.4851 0.6614 9.9332 ( 2 17 36) 0 0.4851 0.6665 18 12 ( 4130 1n57_A) ( 5470 1qvz_A) 0.7221 0.8123 2.6657 ( 1 54 78) 0 0.7221 0.8123 18 16 ( 4130 1n57_A) ( 5673 1rli_A) 0.4424 0.6516 3.3558 ( 1 12 28) 0 0.4887 0.6795 18 12 ( 4130 1n57_A) ( 5752 1s2d_A) 0.4161 0.5721 5.6859 ( 2 12 28) 0 0.4443 0.8854 18 9 ( 4130 1n57_A) ( 5785 1say_A) 0.2222 0.2105 4.0792 ( 0 2 6) 0 0.4999 0.4908 18 19 ( 4130 1n57_A) ( 5842 1sqs_A) 0.4999 0.6424 5.7015 ( 0 14 36) 0 0.5370 0.6424 18 14 ( 4130 1n57_A) ( 5920 1tmy ) 0.5035 0.6371 4.4081 ( 3 20 45) 0 0.5035 0.7985 18 10 ( 4130 1n57_A) ( 6242 1vhq_A) 0.6110 0.7852 2.6471 ( 1 35 55) 0 0.6110 0.7852 18 14 ( 4130 1n57_A) ( 6258 1vi6_A) 0.2420 0.2773 8.4613 ( 1 3 10) 0 0.5109 0.6140 18 13 ( 4130 1n57_A) ( 6283 1vjg_A) 0.4718 0.6075 5.9049 ( 2 14 36) 0 0.4718 0.6075 18 12 ( 4130 1n57_A) ( 6496 2nac_A) 0.2778 0.3846 4.5965 ( 0 3 10) 0 0.5345 0.6192 18 13 ( 4130 1n57_A) ( 6624 5nul ) 0.5547 0.9849 5.2356 ( 1 21 45) 0 0.5547 0.9849 18 10 ( 4130 1n57_A) ( 6640 7req_A) 0.2222 0.3333 4.5592 ( 0 2 6) 0 0.3826 0.4167 18 12 ( 4130 1n57_A) ( 6642 7req_B) 0.3912 0.4237 4.2088 ( 5 22 36) 0 0.4719 0.5853 18 13 -------------------------------------------------------------------------------------------------------------------------