------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4185 1nat ) ( 6 1a04_A) 0.9999 0.9090 2.0869 ( 0 19 45) 0 0.9999 0.9090 10 11 ( 4185 1nat ) ( 26 1a2o_A) 0.9999 0.9999 2.3446 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 90 1a9x_B) 0.8997 0.5000 3.2802 ( 0 14 36) 0 0.8997 0.5000 10 18 ( 4185 1nat ) ( 256 1b00_A) 0.9997 0.9997 3.0729 ( 0 19 45) 0 0.9997 0.9997 10 10 ( 4185 1nat ) ( 266 1b1c_A) 0.9421 0.8715 4.9096 ( 1 14 45) 0 0.9971 0.9073 10 11 ( 4185 1nat ) ( 428 1bmt_A) 0.9995 0.9088 3.3025 ( 0 18 45) 0 0.9995 0.9088 10 11 ( 4185 1nat ) ( 477 1bvy_F) 0.8647 0.9430 4.1101 ( 1 14 36) 0 0.8647 0.9430 10 9 ( 4185 1nat ) ( 523 1c4k_A) 0.6999 0.8747 3.6289 ( 0 5 21) 0 0.6999 0.8747 10 8 ( 4185 1nat ) ( 562 1ccw_A) 0.8998 0.8998 3.1729 ( 0 12 36) 0 0.8998 0.8998 10 10 ( 4185 1nat ) ( 745 1d4a_A) 0.8993 0.5999 4.2554 ( 0 14 36) 0 0.9977 0.6664 10 15 ( 4185 1nat ) ( 786 1dbw_A) 0.9999 0.9999 2.3340 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 793 1dcf_A) 0.9999 0.9999 1.9054 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 971 1dxy ) 0.8998 0.9997 3.0524 ( 0 10 36) 0 0.8998 0.9997 10 9 ( 4185 1nat ) ( 980 1dz3_A) 0.9000 0.9000 1.7333 ( 0 14 36) 0 0.9000 0.9000 10 10 ( 4185 1nat ) ( 1042 1e5d_A) 0.9641 0.9641 4.2072 ( 1 16 45) 0 0.9641 0.9641 10 10 ( 4185 1nat ) ( 1177 1eiw_A) 0.8727 0.9555 3.4936 ( 1 15 36) 0 0.8727 0.9555 10 9 ( 4185 1nat ) ( 1252 1es9_A) 0.9981 0.8326 4.7520 ( 0 19 45) 0 0.9981 0.8326 10 12 ( 4185 1nat ) ( 1253 1esc ) 0.5991 0.3529 7.4173 ( 0 2 15) 0 0.8982 0.5293 10 17 ( 4185 1nat ) ( 1266 1euc_B) 0.9996 0.8332 3.1065 ( 0 14 45) 0 0.9996 0.8332 10 12 ( 4185 1nat ) ( 1379 1f2v_A) 0.9993 0.6249 3.6448 ( 0 13 45) 0 0.9993 0.6249 10 16 ( 4185 1nat ) ( 1397 1f4p_A) 0.8726 0.9554 3.6748 ( 1 15 36) 0 0.8994 0.9990 10 9 ( 4185 1nat ) ( 1443 1f8y_A) 0.4000 0.3636 3.4520 ( 0 1 6) 0 0.6999 0.6363 10 11 ( 4185 1nat ) ( 1516 1fjg_B) 0.4000 0.3333 3.7486 ( 0 2 6) 0 0.4000 0.3805 10 12 ( 4185 1nat ) ( 1547 1flc_A) 0.8193 0.4947 5.2703 ( 1 11 36) 0 0.8193 0.4947 10 18 ( 4185 1nat ) ( 1659 1fye_A) 0.5000 0.2778 2.6792 ( 0 3 10) 0 0.8992 0.5000 10 18 ( 4185 1nat ) ( 1662 1fyx_A) 0.7997 0.7997 3.7790 ( 0 10 28) 0 0.7997 0.7997 10 10 ( 4185 1nat ) ( 1700 1g2i_A) 0.8991 0.6427 4.4461 ( 0 14 36) 0 0.8991 0.6427 10 14 ( 4185 1nat ) ( 1803 1gdh_A) 0.9990 0.9990 4.0290 ( 0 12 45) 0 0.9990 0.9990 10 10 ( 4185 1nat ) ( 1901 1gpm_A) 0.6475 0.5156 2.7757 ( 2 14 36) 0 0.7997 0.5156 10 16 ( 4185 1nat ) ( 2027 1h05_A) 0.8999 0.8181 2.2866 ( 0 9 36) 0 0.8999 0.8181 10 11 ( 4185 1nat ) ( 2427 1i7q_B) 0.8729 0.4985 2.9004 ( 1 15 36) 0 0.8729 0.4985 10 18 ( 4185 1nat ) ( 2470 1iex_A) 0.9997 0.8332 3.0853 ( 0 14 45) 0 0.9997 0.8332 10 12 ( 4185 1nat ) ( 2714 1j2y_A) 0.8995 0.8179 3.7660 ( 0 12 36) 0 0.8995 0.8179 10 11 ( 4185 1nat ) ( 2729 1j4a_A) 0.9994 0.9994 3.5664 ( 0 15 45) 0 0.9994 0.9994 10 10 ( 4185 1nat ) ( 2809 1jbe_A) 0.9999 0.9999 2.3782 ( 0 18 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 3034 1jrl_A) 0.8992 0.8992 4.3608 ( 0 12 36) 0 0.8992 0.8992 10 10 ( 4185 1nat ) ( 3073 1jvn_A) 0.8722 0.4725 4.5379 ( 1 15 36) 0 0.8722 0.4725 10 19 ( 4185 1nat ) ( 3189 1k66_A) 0.9999 0.9090 2.2452 ( 0 17 45) 0 0.9999 0.9090 10 11 ( 4185 1nat ) ( 3190 1k68_A) 0.9999 0.9999 2.0610 ( 0 17 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 3199 1k7c_A) 0.8995 0.5999 3.8652 ( 0 13 36) 0 0.8995 0.5999 10 15 ( 4185 1nat ) ( 3234 1k9v_F) 0.7647 0.4424 2.4827 ( 1 12 28) 0 0.7992 0.4444 10 18 ( 4185 1nat ) ( 3238 1ka9_H) 0.8986 0.5624 4.9639 ( 0 15 36) 0 0.8986 0.5624 10 16 ( 4185 1nat ) ( 3295 1kgs_A) 0.9000 0.9000 2.0009 ( 0 13 36) 0 0.9000 0.9000 10 10 ( 4185 1nat ) ( 3412 1krw_A) 0.9998 0.9998 2.6787 ( 0 15 45) 0 0.9998 0.9998 10 10 ( 4185 1nat ) ( 3462 1kwg_A) 0.8998 0.5625 3.0537 ( 0 13 36) 0 0.8998 0.5625 10 16 ( 4185 1nat ) ( 3560 1l7d_A) 0.8992 0.5294 4.4004 ( 0 11 36) 0 0.9982 0.5881 10 17 ( 4185 1nat ) ( 3581 1l9x_A) 0.9989 0.4348 4.1040 ( 0 16 45) 0 0.9989 0.4348 10 23 ( 4185 1nat ) ( 3632 1li4_A) 0.9991 0.5555 3.9441 ( 0 16 45) 0 0.9991 0.5555 10 18 ( 4185 1nat ) ( 3801 1m2e_A) 0.8995 0.9992 3.7979 ( 0 16 36) 0 0.8995 0.9992 10 9 ( 4185 1nat ) ( 3896 1mb3_A) 0.9999 0.9999 1.6158 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 4066 1mx3_A) 0.8993 0.8177 4.2226 ( 0 9 36) 0 0.8993 0.8177 10 11 ( 4185 1nat ) ( 4130 1n57_A) 0.8540 0.4973 4.4438 ( 1 13 36) 0 0.8540 0.5201 10 18 ( 4185 1nat ) ( 4185 1nat ) 1.0000 1.0000 0.0000 ( 0 19 45) 0 1.0000 1.0000 10 10 ( 4185 1nat ) ( 4323 1nni_1) 0.9762 0.8941 4.3915 ( 1 18 45) 0 0.9762 0.8941 10 11 ( 4185 1nat ) ( 4433 1ny5_A) 0.9969 0.9969 5.3521 ( 0 18 45) 0 0.9969 0.9969 10 10 ( 4185 1nat ) ( 4474 1o1y_A) 0.7341 0.4178 2.9530 ( 1 10 28) 0 0.7341 0.4178 10 19 ( 4185 1nat ) ( 4590 1obo_A) 0.9758 0.9758 4.7199 ( 1 18 45) 0 0.9758 0.9758 10 10 ( 4185 1nat ) ( 4669 1oi7_A) 0.8999 0.8181 2.6251 ( 0 12 36) 0 0.8999 0.8181 10 11 ( 4185 1nat ) ( 4787 1ou0_A) 0.9992 0.5882 3.7973 ( 0 12 45) 0 0.9992 0.5882 10 17 ( 4185 1nat ) ( 4813 1oxb_B) 0.9999 0.9999 1.8866 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 4871 1p2f_A) 0.9999 0.9999 2.0966 ( 0 17 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 4905 1p5f_A) 0.5998 0.4285 4.9863 ( 0 4 15) 0 0.6999 0.5422 10 14 ( 4185 1nat ) ( 4916 1p6u_A) 0.8998 0.8998 2.9853 ( 0 11 36) 0 0.8998 0.8998 10 10 ( 4185 1nat ) ( 4926 1p80_A) 0.8992 0.6921 4.3431 ( 0 14 36) 0 0.8992 0.6921 10 13 ( 4185 1nat ) ( 5096 1psd_A) 0.8993 0.9987 4.2665 ( 0 5 36) 0 0.8993 0.9987 10 9 ( 4185 1nat ) ( 5234 1q7r_A) 0.8992 0.5000 4.3525 ( 0 13 36) 0 0.8992 0.5000 10 18 ( 4185 1nat ) ( 5289 1qcz_A) 0.8996 0.8996 3.5722 ( 0 10 36) 0 0.8996 0.8996 10 10 ( 4185 1nat ) ( 5297 1qdl_B) 0.8999 0.5294 2.7364 ( 0 13 36) 0 0.8999 0.5294 10 17 ( 4185 1nat ) ( 5364 1qkk_A) 0.9947 0.9947 6.1184 ( 0 18 45) 0 0.9947 0.9947 10 10 ( 4185 1nat ) ( 5397 1qo0_D) 0.8798 0.7416 9.8709 ( 0 15 36) 0 0.8798 0.7416 10 12 ( 4185 1nat ) ( 5470 1qvz_A) 0.8991 0.5624 4.4859 ( 0 14 36) 0 0.9631 0.6212 10 16 ( 4185 1nat ) ( 5673 1rli_A) 0.9642 0.8183 4.0813 ( 1 16 45) 0 0.9642 0.8183 10 12 ( 4185 1nat ) ( 5752 1s2d_A) 0.4000 0.4444 3.6169 ( 0 0 6) 0 0.5999 0.6665 10 9 ( 4185 1nat ) ( 5785 1say_A) 0.8998 0.4737 3.0523 ( 0 11 36) 0 0.9983 0.5262 10 19 ( 4185 1nat ) ( 5842 1sqs_A) 0.9212 0.6973 7.0878 ( 1 13 45) 0 0.9212 0.6973 10 14 ( 4185 1nat ) ( 5920 1tmy ) 0.9999 0.9999 1.4312 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 4185 1nat ) ( 6242 1vhq_A) 0.8648 0.6358 3.8805 ( 1 14 36) 0 0.9696 0.7083 10 14 ( 4185 1nat ) ( 6258 1vi6_A) 0.7085 0.5857 3.5926 ( 1 9 28) 0 0.7085 0.5857 10 13 ( 4185 1nat ) ( 6283 1vjg_A) 0.8984 0.7494 5.1471 ( 0 10 36) 0 0.8984 0.7494 10 12 ( 4185 1nat ) ( 6496 2nac_A) 0.9991 0.7690 3.9286 ( 0 12 45) 0 0.9991 0.7690 10 13 ( 4185 1nat ) ( 6624 5nul ) 0.6468 0.6468 6.2888 ( 1 9 21) 0 0.8993 0.8993 10 10 ( 4185 1nat ) ( 6640 7req_A) 0.9998 0.8332 2.7944 ( 0 19 45) 0 0.9998 0.8332 10 12 ( 4185 1nat ) ( 6642 7req_B) 0.9989 0.7689 4.1022 ( 0 15 45) 0 0.9989 0.7689 10 13 -------------------------------------------------------------------------------------------------------------------------