------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4433 1ny5_A) ( 6 1a04_A) 0.9964 0.9068 5.5594 ( 0 19 45) 0 0.9964 0.9068 10 11 ( 4433 1ny5_A) ( 26 1a2o_A) 0.9976 0.9976 5.0213 ( 0 20 45) 0 0.9976 0.9976 10 10 ( 4433 1ny5_A) ( 90 1a9x_B) 0.8985 0.4999 5.1071 ( 0 13 36) 0 0.8985 0.4999 10 18 ( 4433 1ny5_A) ( 256 1b00_A) 0.9986 0.9986 4.4149 ( 0 20 45) 0 0.9986 0.9986 10 10 ( 4433 1ny5_A) ( 266 1b1c_A) 0.8972 0.8164 5.9569 ( 0 12 36) 0 0.9935 0.9050 10 11 ( 4433 1ny5_A) ( 428 1bmt_A) 0.9952 0.9061 5.9853 ( 0 18 45) 0 0.9952 0.9061 10 11 ( 4433 1ny5_A) ( 477 1bvy_F) 0.8518 0.9234 6.3739 ( 1 13 36) 0 0.8518 0.9234 10 9 ( 4433 1ny5_A) ( 523 1c4k_A) 0.7993 0.9979 4.8415 ( 0 9 28) 0 0.7993 0.9979 10 8 ( 4433 1ny5_A) ( 562 1ccw_A) 0.8984 0.8984 5.1725 ( 0 12 36) 0 0.8984 0.8984 10 10 ( 4433 1ny5_A) ( 745 1d4a_A) 0.8889 0.5985 8.4380 ( 0 14 36) 0 0.9846 0.6646 10 15 ( 4433 1ny5_A) ( 786 1dbw_A) 0.9983 0.9983 4.5772 ( 0 18 45) 0 0.9983 0.9983 10 10 ( 4433 1ny5_A) ( 793 1dcf_A) 0.9977 0.9977 4.9814 ( 0 19 45) 0 0.9977 0.9977 10 10 ( 4433 1ny5_A) ( 971 1dxy ) 0.8995 0.9991 3.8873 ( 0 9 36) 0 0.8995 0.9991 10 9 ( 4433 1ny5_A) ( 980 1dz3_A) 0.9000 0.9000 1.8958 ( 0 15 36) 0 0.9000 0.9000 10 10 ( 4433 1ny5_A) ( 1042 1e5d_A) 0.9537 0.9537 5.2191 ( 1 15 45) 0 0.9537 0.9537 10 10 ( 4433 1ny5_A) ( 1177 1eiw_A) 0.8634 0.9410 5.6140 ( 1 14 36) 0 0.8692 0.9501 10 9 ( 4433 1ny5_A) ( 1252 1es9_A) 0.8959 0.7484 6.5318 ( 0 13 36) 0 0.9705 0.8210 10 12 ( 4433 1ny5_A) ( 1253 1esc ) 0.8843 0.5283 9.2336 ( 0 14 36) 0 0.8855 0.5284 10 17 ( 4433 1ny5_A) ( 1266 1euc_B) 0.9946 0.8311 6.1585 ( 0 15 45) 0 0.9946 0.8311 10 12 ( 4433 1ny5_A) ( 1379 1f2v_A) 0.9908 0.6241 7.0493 ( 0 12 45) 0 0.9908 0.6241 10 16 ( 4433 1ny5_A) ( 1397 1f4p_A) 0.8697 0.9508 6.4393 ( 1 15 36) 0 0.8969 0.9948 10 9 ( 4433 1ny5_A) ( 1443 1f8y_A) 0.4000 0.3636 3.7881 ( 0 3 6) 0 0.7994 0.7269 10 11 ( 4433 1ny5_A) ( 1516 1fjg_B) 0.4000 0.3333 3.8892 ( 0 2 6) 0 0.4000 0.3879 10 12 ( 4433 1ny5_A) ( 1547 1flc_A) 0.7948 0.4442 8.0497 ( 0 8 28) 0 0.7953 0.4442 10 18 ( 4433 1ny5_A) ( 1659 1fye_A) 0.5000 0.2778 3.0301 ( 0 3 10) 0 0.8971 0.4998 10 18 ( 4433 1ny5_A) ( 1662 1fyx_A) 0.7978 0.7978 6.5176 ( 0 9 28) 0 0.7978 0.7978 10 10 ( 4433 1ny5_A) ( 1700 1g2i_A) 0.6980 0.4996 7.4454 ( 0 9 21) 0 0.8918 0.6413 10 14 ( 4433 1ny5_A) ( 1803 1gdh_A) 0.9891 0.9891 7.3549 ( 0 11 45) 0 0.9891 0.9891 10 10 ( 4433 1ny5_A) ( 1901 1gpm_A) 0.7638 0.5858 6.2393 ( 2 17 45) 0 0.7968 0.5858 10 16 ( 4433 1ny5_A) ( 2027 1h05_A) 0.8969 0.8162 6.1176 ( 0 8 36) 0 0.9318 0.8644 10 11 ( 4433 1ny5_A) ( 2427 1i7q_B) 0.8624 0.4978 6.2689 ( 1 14 36) 0 0.8624 0.4978 10 18 ( 4433 1ny5_A) ( 2470 1iex_A) 0.9927 0.8304 6.6507 ( 0 14 45) 0 0.9927 0.8304 10 12 ( 4433 1ny5_A) ( 2714 1j2y_A) 0.8994 0.8178 4.0206 ( 0 11 36) 0 0.8994 0.8178 10 11 ( 4433 1ny5_A) ( 2729 1j4a_A) 0.9909 0.9909 7.0236 ( 0 14 45) 0 0.9909 0.9909 10 10 ( 4433 1ny5_A) ( 2809 1jbe_A) 0.9987 0.9987 4.2909 ( 0 18 45) 0 0.9987 0.9987 10 10 ( 4433 1ny5_A) ( 3034 1jrl_A) 0.8923 0.8923 7.6786 ( 0 11 36) 0 0.8923 0.8923 10 10 ( 4433 1ny5_A) ( 3073 1jvn_A) 0.8928 0.4734 7.5687 ( 0 15 36) 0 0.8928 0.4734 10 19 ( 4433 1ny5_A) ( 3189 1k66_A) 0.9963 0.9068 5.6033 ( 0 16 45) 0 0.9963 0.9068 10 11 ( 4433 1ny5_A) ( 3190 1k68_A) 0.9964 0.9964 5.5570 ( 0 16 45) 0 0.9964 0.9964 10 10 ( 4433 1ny5_A) ( 3199 1k7c_A) 0.8917 0.5989 7.8455 ( 0 14 36) 0 0.8920 0.5989 10 15 ( 4433 1ny5_A) ( 3234 1k9v_F) 0.7509 0.4414 6.1191 ( 1 11 28) 0 0.7509 0.4414 10 18 ( 4433 1ny5_A) ( 3238 1ka9_H) 0.7505 0.4946 6.5637 ( 1 11 28) 0 0.7931 0.4993 10 16 ( 4433 1ny5_A) ( 3295 1kgs_A) 0.8991 0.8991 4.5046 ( 0 13 36) 0 0.8991 0.8991 10 10 ( 4433 1ny5_A) ( 3412 1krw_A) 0.9947 0.9947 6.1268 ( 0 14 45) 0 0.9947 0.9947 10 10 ( 4433 1ny5_A) ( 3462 1kwg_A) 0.8980 0.5623 5.4356 ( 0 12 36) 0 0.8980 0.5623 10 16 ( 4433 1ny5_A) ( 3560 1l7d_A) 0.8889 0.5286 8.4521 ( 0 10 36) 0 0.9843 0.5871 10 17 ( 4433 1ny5_A) ( 3581 1l9x_A) 0.8969 0.3913 6.0973 ( 0 12 36) 0 0.8969 0.4256 10 23 ( 4433 1ny5_A) ( 3632 1li4_A) 0.9886 0.5549 7.4421 ( 0 16 45) 0 0.9886 0.5549 10 18 ( 4433 1ny5_A) ( 3801 1m2e_A) 0.8990 0.9983 4.6106 ( 0 16 36) 0 0.8990 0.9983 10 9 ( 4433 1ny5_A) ( 3896 1mb3_A) 0.9972 0.9972 5.2201 ( 0 20 45) 0 0.9972 0.9972 10 10 ( 4433 1ny5_A) ( 4066 1mx3_A) 0.8901 0.8120 8.1882 ( 0 8 36) 0 0.8901 0.8120 10 11 ( 4433 1ny5_A) ( 4130 1n57_A) 0.6994 0.5200 6.0084 ( 2 15 45) 0 0.6994 0.5200 10 18 ( 4433 1ny5_A) ( 4185 1nat ) 0.9969 0.9969 5.3521 ( 0 18 45) 0 0.9969 0.9969 10 10 ( 4433 1ny5_A) ( 4323 1nni_1) 0.9819 0.8977 5.4418 ( 1 20 45) 0 0.9819 0.8977 10 11 ( 4433 1ny5_A) ( 4433 1ny5_A) 1.0000 1.0000 0.0000 ( 0 20 45) 0 1.0000 1.0000 10 10 ( 4433 1ny5_A) ( 4474 1o1y_A) 0.7327 0.4177 6.5964 ( 1 10 28) 0 0.7327 0.4515 10 19 ( 4433 1ny5_A) ( 4590 1obo_A) 0.8974 0.8974 5.8635 ( 0 16 36) 0 0.8975 0.8975 10 10 ( 4433 1ny5_A) ( 4669 1oi7_A) 0.7999 0.7272 2.5916 ( 0 7 28) 0 0.8929 0.8137 10 11 ( 4433 1ny5_A) ( 4787 1ou0_A) 0.9231 0.5818 6.5011 ( 1 13 45) 0 0.9231 0.5818 10 17 ( 4433 1ny5_A) ( 4813 1oxb_B) 0.9973 0.9973 5.1813 ( 0 19 45) 0 0.9973 0.9973 10 10 ( 4433 1ny5_A) ( 4871 1p2f_A) 0.9979 0.9979 4.8628 ( 0 18 45) 0 0.9979 0.9979 10 10 ( 4433 1ny5_A) ( 4905 1p5f_A) 0.5228 0.4982 6.5926 ( 3 16 45) 0 0.9328 0.7001 10 14 ( 4433 1ny5_A) ( 4916 1p6u_A) 0.8982 0.8982 5.3387 ( 0 12 36) 0 0.8982 0.8982 10 10 ( 4433 1ny5_A) ( 4926 1p80_A) 0.8954 0.6911 6.7461 ( 0 14 36) 0 0.8954 0.6911 10 13 ( 4433 1ny5_A) ( 5096 1psd_A) 0.8930 0.9883 7.4927 ( 0 5 36) 0 0.8930 0.9883 10 9 ( 4433 1ny5_A) ( 5234 1q7r_A) 0.8993 0.5000 4.1370 ( 0 12 36) 0 0.8993 0.5000 10 18 ( 4433 1ny5_A) ( 5289 1qcz_A) 0.8988 0.8988 4.8312 ( 0 10 36) 0 0.8988 0.8988 10 10 ( 4433 1ny5_A) ( 5297 1qdl_B) 0.8965 0.5292 6.2772 ( 0 12 36) 0 0.8965 0.5292 10 17 ( 4433 1ny5_A) ( 5364 1qkk_A) 0.9999 0.9999 2.1276 ( 0 18 45) 0 0.9999 0.9999 10 10 ( 4433 1ny5_A) ( 5397 1qo0_D) 0.8986 0.7495 4.9665 ( 0 14 36) 0 0.8986 0.7495 10 12 ( 4433 1ny5_A) ( 5470 1qvz_A) 0.8938 0.5619 7.2753 ( 0 14 36) 0 0.8938 0.5619 10 16 ( 4433 1ny5_A) ( 5673 1rli_A) 0.9563 0.8148 7.2894 ( 1 16 45) 0 0.9563 0.8148 10 12 ( 4433 1ny5_A) ( 5752 1s2d_A) 0.4000 0.4444 5.0602 ( 0 2 6) 0 0.5000 0.5555 10 9 ( 4433 1ny5_A) ( 5785 1say_A) 0.6230 0.4811 6.9912 ( 2 13 45) 0 0.8939 0.4982 10 19 ( 4433 1ny5_A) ( 5842 1sqs_A) 0.8517 0.6329 6.4243 ( 1 13 36) 0 0.8964 0.6422 10 14 ( 4433 1ny5_A) ( 5920 1tmy ) 0.9975 0.9975 5.0770 ( 0 20 45) 0 0.9975 0.9975 10 10 ( 4433 1ny5_A) ( 6242 1vhq_A) 0.8619 0.6352 6.5025 ( 1 14 36) 0 0.9619 0.7067 10 14 ( 4433 1ny5_A) ( 6258 1vi6_A) 0.5000 0.3846 4.1141 ( 0 1 10) 0 0.6986 0.5703 10 13 ( 4433 1ny5_A) ( 6283 1vjg_A) 0.8949 0.7479 6.9239 ( 0 10 36) 0 0.8949 0.7479 10 12 ( 4433 1ny5_A) ( 6496 2nac_A) 0.9912 0.7668 6.9784 ( 0 11 45) 0 0.9912 0.7668 10 13 ( 4433 1ny5_A) ( 6624 5nul ) 0.8615 0.8615 6.7042 ( 1 14 36) 0 0.8963 0.8963 10 10 ( 4433 1ny5_A) ( 6640 7req_A) 0.9985 0.8327 4.4218 ( 0 18 45) 0 0.9985 0.8327 10 12 ( 4433 1ny5_A) ( 6642 7req_B) 0.9977 0.7686 4.9636 ( 0 15 45) 0 0.9977 0.7686 10 13 -------------------------------------------------------------------------------------------------------------------------